CU091730 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU091730
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-dependent RNA helicase
LocationChr3 : 14982384 .. 14995222 (-)
Sequence length324
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGAGTAGGGGTAAAGATGATGATAAGCTAGATCGGTTCCAATCATCCCAAGCTGAATGGATCAAACAGTATGTAGAGCAGCAAGAAGAGGATGACTATGGAATCTGGGAAGATAACATGGCTGATGAAGGTTCTTCGAAAGAAGGCTTCGCAAGCAAGGTCCTATGATGTTATTGCGGAAGAGTATTATGCTGCACGGTTGGACGCTGCAAAAGCAAAAGGAAGAAGGGGACAAGAAAAGACAAGAGACTGCTGGCAACATCATTCGCAAGCTTAAAACAGGAGTTGTTAGCTCAAGGATTATCAGTTGATATGCTGGCTTC
BLAST of CU091730 vs. TrEMBL
Match: A0A0A0L9G2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKE 61
           LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSK+
Sbjct: 173 LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKK 220

Query: 62  121
           
Sbjct: 233 220

Query: 122 146
           
Sbjct: 293 220

BLAST of CU091730 vs. TrEMBL
Match: A0A0A0L9G2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-05
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 3

Query: 141 KKASQARSYDVIAEEYYAARLDAAKAKGRRGQEKTRD 200
           KKASQARSYDVIAEEYYAARLDAAKAK   G +K ++
Sbjct: 219 KKASQARSYDVIAEEYYAARLDAAKAK-EEGDKKRQE 254

Query: 201 252
           
Sbjct: 279 254


HSP 2 Score: 44.7 bits (104), Expect = 8.5e-02
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1

Query: 214 KQKEEGDKKRQETAGNIIRKLK 273
           K KEEGDKKRQETAGNIIRKLK
Sbjct: 243 KAKEEGDKKRQETAGNIIRKLK 264

Query: 274 280
           
Sbjct: 303 264


HSP 3 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEG 61
           L   +D++ LD  + SQA+WIK+YVEQQEED    WED+MADEG
Sbjct: 127 LKGNRDNESLDSHKQSQADWIKRYVEQQEEDSSDTWEDHMADEG 170

Query: 62  121
           
Sbjct: 187 170

Query: 122 134
           
Sbjct: 247 170

BLAST of CU091730 vs. TrEMBL
Match: A0A059B954_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00347 PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 2.7e+00
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 3

Query: 141 KKASQARSYDVIAEEYYAARLDAAKAKGRR---GQEK 200
           +K  + RSYD IA EY+AARLDA++AK +R    QEK
Sbjct: 173 QKIREPRSYDDIAREYHAARLDASRAKEKRDKSSQEK 209

Query: 201 243
           
Sbjct: 233 209


HSP 2 Score: 58.2 bits (139), Expect = 7.3e-06
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 2

Query: 14  KDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKE 73
           +DD+ L   Q SQA+WI+QY+EQQEED+   WED+  D+ SSKE
Sbjct: 220 QDDNNLGSLQRSQADWIRQYMEQQEEDEDETWEDHATDKSSSKE 263

Query: 74  133
           
Sbjct: 280 263

Query: 134 146
           
Sbjct: 340 263

BLAST of CU091730 vs. TrEMBL
Match: A0A0D2RAF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-06
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 2

Query: 14  KDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKE 73
           +D++ L+  Q SQA+WI+QY+EQQEED+   WED  +DEGS++E
Sbjct: 183 EDENSLNMCQPSQADWIRQYMEQQEEDESKTWEDEASDEGSAEE 226

Query: 74  133
           
Sbjct: 243 226

Query: 134 146
           
Sbjct: 303 226

BLAST of CU091730 vs. TrEMBL
Match: A0A0D2RAF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 1.6e+00
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3

Query: 141 KKASQARSYDVIAEEYYAARLDAAKAKGRR---GQEK 200
           ++ S  R YDVIA+EY+AARL+A KAK ++   GQEK
Sbjct: 225 EEVSGPRPYDVIAKEYHAARLEATKAKEKKDKNGQEK 261

Query: 201 243
           
Sbjct: 285 261


HSP 2 Score: 58.2 bits (139), Expect = 7.3e-06
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 2

Query: 14  KDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKE 73
           +D++ L+  Q SQA+WI+QY+EQQEED+   WED  +DEGS++E
Sbjct: 183 EDENSLNMCQPSQADWIRQYMEQQEEDESKTWEDEASDEGSAEE 226

Query: 74  133
           
Sbjct: 243 226

Query: 134 146
           
Sbjct: 303 226

BLAST of CU091730 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 63/107 (58.88%), Postives = 67/107 (62.62%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKEGFASKVL*CYCG 61
           LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSK+   ++       
Sbjct: 19  LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAE 78

Query: 62  RVLCCTVGXXXXXXXXXXXXXXXLLATSFASLKQELLAQGLSVDMLA 121
                 +                        LKQELLAQGLSVDMLA
Sbjct: 79  EYYAARL-DAAKAKEEGDKKRQETAGNIIRKLKQELLAQGLSVDMLA 124

Query: 122 181
           
Sbjct: 139 124

Query: 182 241
           
Sbjct: 199 124

Query: 242 301
           
Sbjct: 259 124

Query: 302 323
           
Sbjct: 319 124

BLAST of CU091730 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 63/107 (58.88%), Postives = 67/107 (62.62%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKEGFASKVL*CYCG 61
           LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSK+   ++       
Sbjct: 173 LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAE 232

Query: 62  RVLCCTVGXXXXXXXXXXXXXXXLLATSFASLKQELLAQGLSVDMLA 121
                 +                        LKQELLAQGLSVDMLA
Sbjct: 233 EYYAARL-DAAKAKEEGDKKRQETAGNIIRKLKQELLAQGLSVDMLA 278

Query: 122 181
           
Sbjct: 293 278

Query: 182 241
           
Sbjct: 353 278

Query: 242 301
           
Sbjct: 413 278

Query: 302 323
           
Sbjct: 473 278

BLAST of CU091730 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKEGFASKVL*CYCG 61
           LSR KDDDKLDRFQSSQAEWIKQYVEQQEEDDYG WEDNMADEGSS+E   ++       
Sbjct: 19  LSRRKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGTWEDNMADEGSSREASQARSYDVIAE 78

Query: 62  RVLCCTVGXXXXXXXXXXXXXXXLLATSFASLKQELLAQGLSVDMLA 121
                 +                        LKQELLAQGLSVDMLA
Sbjct: 79  EYYAARL-DAAKAKEEGDKKRQETAGNIIRKLKQELLAQGLSVDMLA 124

Query: 122 181
           
Sbjct: 139 124

Query: 182 241
           
Sbjct: 199 124

Query: 242 301
           
Sbjct: 259 124

Query: 302 323
           
Sbjct: 319 124

BLAST of CU091730 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKEGFASKVL*CYCG 61
           LSR KDDDKLDRFQSSQAEWIKQYVEQQEEDDYG WEDNMADEGSS+E   ++       
Sbjct: 173 LSRRKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGTWEDNMADEGSSREASQARSYDVIAE 232

Query: 62  RVLCCTVGXXXXXXXXXXXXXXXLLATSFASLKQELLAQGLSVDMLA 121
                 +                        LKQELLAQGLSVDMLA
Sbjct: 233 EYYAARL-DAAKAKEEGDKKRQETAGNIIRKLKQELLAQGLSVDMLA 278

Query: 122 181
           
Sbjct: 293 278

Query: 182 241
           
Sbjct: 353 278

Query: 242 301
           
Sbjct: 413 278

Query: 302 323
           
Sbjct: 473 278

BLAST of CU091730 vs. NCBI nr
Match: gi|700202481|gb|KGN57614.1| (hypothetical protein Csa_3G229400 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 9.2e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 2

Query: 2   LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKE 61
           LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSK+
Sbjct: 173 LSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKK 220

Query: 62  121
           
Sbjct: 233 220

Query: 122 146
           
Sbjct: 293 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L9G2_CUCSA4.4e-1997.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1[more]
A0A0A0L9G2_CUCSA4.8e-0578.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1[more]
A0A059B954_EUCGR2.7e+0056.76Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00347 PE=4 SV=1[more]
A0A0D2RAF0_GOSRA7.3e-0654.55Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
A0A0D2RAF0_GOSRA1.6e+0056.76Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778680315|ref|XP_011651288.1|1.2e-2058.88PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|1.2e-2058.88PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|2.9e-1957.01PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|2.9e-1957.01PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
gi|700202481|gb|KGN57614.1|9.2e-1897.92hypothetical protein Csa_3G229400 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G229400Csa3G229400gene
Csa3G229380Csa3G229380gene
Csa3G229390Csa3G229390gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0190538G0190538EST
H0038602H0038602EST