Csa3G229400 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G229400
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Helicase associated domain-containing protein
Location	Chr3 : 14989422 .. 14997040 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTGTTTCTATTGGGATCTCTGGCTCCGTGTACAATGGCTCCAAGGAAGAAGCAACAGCAGCAACCCAAGCAGAAGCAAAACAACCGAAAATCCAATTCCACTCCCTCCACCTCCGATGCTCGTCCTTCTTCCTCCGGTCCAAAGCTCAATATCTCCGCCGAAAACGAGACTCGTCTCCGTCGTCTCCTTCTGAGCTCCGGCCGCTCCACTCCATCGGTCACTCCCGCAGATGATTCGCTCTCAAAGGTCCAGAAGGTCAAGAAGCTTAAAGCCGTTTACGAGAAGCTCTCATGCGAAGGTTTTACCAATGATCAAATTGAACTGGCACTCTCCGCTATCGGGGTAACTTGCTTTTCAATGTTCTTTTTTTTTTTTTCCTTTTTTTAAAATTTTGTTAAAAGTAACATTTTAGTGTTTTAGACTTGTAATTACTATTTCTTTAGTTTTCTAGGCGGTTTCAATCTGGTTAATTAGGTTCCTGATTAAAATAACATCATGTTGGGTTAGAAAATTGAAGAATAATGCAGAACGAAGGAAGCGTTGATGGATTGTTTTACCAATTGGTTATTTTGTTTAACGAATTTTAGAATTGGAATGAAATGGAATTATGCCTGAATGGAATTTTTTTTTATTGGCATTTTGGCAAAAGCACTTGTGTTTTCTTTATCCATTTTTGTGGAATAGGTTGGATAACCGAGCCGATGACTTGTATGGTCTCCTTGCAATTGCATGTTCTTCATTGATTTTACGTTGTTAACTCAAAGTTACAATCAACAAATAATTTAAGTACGCCTTAATTGAGTTTATCAAACATAGCATGATATTTTAGCATGTTATTAGGTTCTTTCAATGCGAGAGACTTATAGGATCATTCTCTTTTCCTTTATATTCCGTTGGCTGCAAGCTGAATGATGCTTATTTGTTTAGATTCTGTAGGTAGGAGATTCATGGAGTAAAAGAGCATAAACATAAATGGTGGATATTCTAGGGACATCTCTGACTAGCATAAAATAAGAATTACTTTGTATTATGACCTTATTTGAATTGCTTCTGTTTTATAGATTGTACAACTGTGTCCTTGAGTTCTAAGAATTACTTTGTATTGGAATTTTCCTCGTCCCTTAGGGGTTGATAAAGTTTGAACTCTTTTCTCTAGTGTTAAGGCTTTGAGTGTCCTATAAGACTTGAAATTAAATCTAATCTCTTTTGTAACTCGGCCCAACATCTTTATGTGCCAATTGAAAACTTTCTATCTGAAACCTTTGACTAAAATAAATTCTATGTGCTGCCAGTTTTCTGAAATTGTTTTGTTTTAGTATTCATTTACTATATTCAGTTTTTATTTGACATCTAATTGTAACTGTTTTGATAGCTTGATATTGATTATGCTCTCGGTTCTGTTCCTGAAAAATTTAGAGTTCCTTAACATTATCCTTGACCATACATATCTCAACAAATGGCATAATTTTCTTGTCTCGAGTAGGATGGTGCTACATTTGAAGCTGCTCTTGATTGGTTATGCTTGAACTTGCCTAGTAGCGAGCTTCCATTGAAATTTTCAAGTGGAACTTCTTTGCATACACATGTAGGTATGTTATGTTTTATATATTGGTATTGTTGAATGGTGTCTGTTTACATTTTCAAGTTTATTTACATACAGTTAATGCAAACAATTTACGATGCTTGATGCTATTGTCCTGCAATATTATTTTCAGGTGGTTCTGTTCGTATACTACAGACTGCACAAAAAGACTGTCCTTCAATGGTAGTCCAATCTTCCAAAGATGAAGATGGAAACAAAGATGTTCCTATTATATTGAGTAGGGGTAAAGATGATGATAAGCTAGATCGGTTCCAATCATCCCAAGCTGAATGGATCAAACAGTATGTAGAGCAGCAAGAAGAGGTGCGACAAGAAGTTTCATTAATGCTTACATCTACTCTACTATTTGCAGCTCAAATTTATTGATCTGATGACGTTAATACCAAAGAAATATTTTGCTAACTACTCTGTCACCTTTTCCTCCACTGGTTTGTAGTTTCTTTGCCGATTATATAGGAGAGTTGGTGACTTCAGTTCCATAAGCCTCCGTACGGACTATACAAAACTGTGGCCAGAATTTTCTTTAGGGGTTTGAAGAGAGTCCTCCCTTTCACTATTTATACGGATCAATTGACTTTTTAGGATCAGTTGTATTTTTAAAGGTAATTACACAAAGCTGTATCAACAAACACCTATATAGAAGAGGATTAGACCTCACTCATTAGTCATTCCCACACCTCCTTCAAAGAACTCTCAAACCCTTTAAAAATGCTACTACTCTTTAGTCAAACCCCCCATAGAATAGAGAGAAAAATTCTACCACAATGCTCTACGCACTATCTAGTTCATAAGGATTTTCATAATCATTGAGTGATAGTTTTTGTTATGCATCAAAGTGATGCAAACAAGCCAAAACATTGATTCCAAAGGGAACAAGTGAACTGCTAGCTCCACATCAAATGATCTAGATCTTCTTCATTTATAGTATGCATGGAAATATAGGAGCTCGTCTTATGTCATTGATTGTAATTTTACCATTCTTAGTTTAGAGCTTCCATGTATGCCTGTATATGTTGAACTCTAATGCATGGAATGGGTTCTAAAAAAAGTTAGTCCTTCTCTGGTCCATTTGTTTTAGAAGCCATAACACGGATGGTATGATCCAAAATAAGTTTTGAGATTGCGCGCTATCCCCAACTGGTTGTAGATTGTGTTTGAGAGAGATAGAAGACTCAGACCACTTGTTTCTTCACTCCTATTTTGCTTATAAGGACTGGAATTTTATTTTTAAGAAGTTGGGTTTGGTGTTGTTTCTCCCCCAAGGACTTACAGACTAAATGGAACAACACATCTTTTGTGGCACTTACAGACTAAATGGAACAACACATCTTTTCAATATACCTCCTCAATTTGATTTCTTTTGTAATTTTACAAAGTTTTTGGTGGGCCTTTACGCTCCTAAATTCTTGTAACTATAACATCTTAGGGTGTGTTTGCCCAAGGATTTTGGAAGTAGAAGTAGGAAAGTATGGAGTTACTCTTTGTTTGGCCCAAGGAGTTCGTGGATCCCACTACTAAAAAACATCAATTTTATACCTTATCAACTCTTTACACTGTAGGCCCTGGGAGTTCACAACTTCCTAGACTTTATAACTCTTTACTCCCCACTATTCCACTCCTTGTCCAAACACCCTTTAATGATTATCAATAATTGGAAAGCACTAGTCATGTAATTTATTTTCTGGAAAGGATTTCCTCCACTCTTGACCCTTAAGTTGTTCTTTTTGAAACAAAGACAAGTCTGGGAAAAAGTTTGGACGCAATGAAGACTGTCAGTTGCAAGGGAAAAAGTTTGCTTGCAAAGAGTGCGGTAATGCTTGGACGGGGATTCAACTACCATGCCTCCCCTATAGTACATTTTGGACTTTTTCAGCTTTGGTAAACTTGCATATGAAAAAGCCAAAATGTCACACTATAGATTTATTACATAAAAAGGAAAGCAACGAGCTAAAGTAAACATAAGACATAAAGATAAGATAAATCGGGGTTATTTGGACATACGACCATAGGCAAACAACGCCCTGGACAAGTATGACCATGACACTAGGAGGGGGTCTTAATCTAGCTGAGATGTTCGAGTGTTCCTTCCGATTCTCTCTCTTTCTCTACTTGTTTGGCATATCTGTTATTCTCATTGTATAATTCTGTTGTACTTTGAGTCTGTATTAAGGAAGAAGCTTGTCTCTTGTTTTTTTTTAAAAACCATATAAATTGGTAGTATGATAATGACAGTATTAAGTTGGCTTCTTCTTCACAGCCAGCCTTCTTTCCGGATCAAGGGTTTGTCTTGAAACCTCAGGATCCTTCTCGATAAAATCATTGGTTAAGCATATTTCGACATCTTCTTCTTTGGAAAACTCTTTGTACAAAAGGCTTTGGAAATCTAACAGTCCAAGAAGGATAAATGTCCATATGGATTATGCTGTTAAGAAATTTTAACTATGCCTCAGTACTTCAAAGAAAGCTTTCCTCCCATGCCCTCTCACCTCATGCCTGCCCCCTTTGTGATCAGTTTCAACATTAATTTATAACTTGTTTGCAAAGGTTCTCGCAGAAAGATTAAAGAAAGTAATTCCAAGTATTACTGCTCCATTACAATGTGGCTTTCTGGAAGAGCGCCAAATCTTGGATCCTAGTTTAATAGCAAATGAAACTGTCTAGGACTATAGAATCCGAAAAAAGAAAAGATGGATGTTTAAATTAGACCTTGAAAAGGCCTTTAACAGAGTGGATTGGAATTTGTAGTGTGGATTTGGGTGTCTTTTCAATCTCCATTATAGTAAAACCTGCCGTTGCAGACGGCTGGACGTAGTCCCGAGTTTGCAGTGAACCAATATAATTTTTGTTGTTCTCCTTTTTCCTTTTGCTTTATAATTTTTACTTTTATGATTTATTGCTTATTTGGTTCTAACATGTGAGTGGGAATTTGAGATATAATTTAGTTTATTTTGCATTTATTTATATTTTGCTTAAAATTCCAACGTGGAGATTCATAGAGGAGGAAAAATTCATTATGGAAGCAAGTAATAATTAGTATCCATGGCAAAGAACCCTTTGATTGGCACACGGTGGGCAAATCCAGTAGTAGCTTGAAGAGTCCATGGATTAGTATTTCAAGAGCTTGGAGGAAGGTGAAAGCCTTGGCCTTGTTCAAGCTTGGAAACGGCAATAGAATTGCTTTTTGGTCTGATTTGTGGGTTGAAGATATTCTCCTTAATCTTCGATTCTCAAAGTTATTTAGAATTGCCTTGCTGCCAAGTGATTCCGTTGCTGCACATTGGGACCACTCCATTTCATCTTGGTCTATTGTCTTTTGAAGACTTCTTAAAGAAGATGAAATTTCAGACTTCCAATCTTTGTTTCACCTACTCTCACATAAGAGGCTGGTAGATTCGGCTGACAGAAGATATTGGGCCTTAGATCCATCCGACAACTTTTAAGTTAAATCCCTCTTGGCTCACCTGTCTCTCTCATCTCTGTTGGATAAAGGGATTTACAAAGCTTTGTGGAAATCTAGTAGTCCAAGGAGAGTTAACACCCTCATTTGGATTATGTTATTCGGCCTTCTGAACTGCACCTCGGTTATGAGGAAAACTCCCCAACAGCGGCCTTTCGCCCTCAGTTTGCCCTCTTTGTATGAAGGGGAAGATTTGCTGCATTTGTTTGTTAGTTGTTCATATTCAGCTAATTGTTGAGGGAACTTGTTCTCTCTATTTGGAGTTGTTGGGTTTTTGACGGCTCATTCAACTCAAATGTTATTCAGTTACTTAGGGGCCCGATTTTGAAGAAGAGGCTGATAATTATTTGGGAAAACATGACTAAAGCCATATTCGCGGGACTTTGGTCTGAAAGCAATCAACGAATTTTCCATGTCAAGGCAATAGGCTGGTCTGAATGAATGGACATTGCTAAAAGAAATGCAGCTTGTTGGTGCACTTTGAACAAGGAATTTCATGATTACTCTATTTGGGACCCATGCTTAAATTGACTGGCCTTCATTCCACAAGCTTGATAGCGCTTACAACTGTTGTCTTTAGCCATTTTGGTTCTTTTTTCAGATCTCTGTCTTTGTTTAGCAGGCCATTATCCTCAAGCTCGAAGAAGTTGCTGAAGACCATCTACTTCTTGTTCTACTTTGTTTCTGTTTAAGTTTCATTCTTGGACAGGATTTGTAGCTGCGATTGTATAATTCTTTTGTACTTTGAGTTTTACATTATTAATAGAGGTTTCTATTATGATTATTAGAATGTAATTAGCCTATGGGGAAAGGCTTGCTTTGGTTTTGTATTTGACTGTAGTCCGTTATTTATTAGTGTTCTAGACATGATGAGAGCGCTAGGGGTGTCAACCTAGTTAGGGCCGGTCTTCTTTCAAAGAAAAAAAAACCACGACACTTTTTTCATAGTCTCCTCTCTTCTCGCCTGTAGTCTACTCATTGTATAATCCTCTTGTGCTATGAACTTCTGATATATTAATAAAGAGGCTGTCTCCTTTAAAAAAAAAACTATACTTTTTTGAACCGCTCTCATTTTTTTCGCACATTGTTGTAAGAGAAATAGTAAGATGATTGAAAACATCGATGTTATTATTCACTTTTTATAATGAAATTATTATTTTTCCCAATAGCAATGACAATGACATTTTGAGTTCTGTATTTTTATTAGGATGACTATGGAATCTGGGAAGATAACATGGCTGATGAAGGTTCTTCGAAGAAGGTACTTTCTTAACAGGACTCTCTCCAAGCAACAAGTTCATATCTTTTTAATTTTGTGAGAAAAAGTGACAGGATGGGGATTGTGCTATCTTGTGGGTCTTTGGGTGTGAGAAAGAGAAATAATAGGATTTTTAGAGGGGAGAGATCATGTGACGATATTTTGGTCTCTTTATTGATCTTATATTCTCTTTGTGCTTCAGCAAGATTATTATTATTTTTCTTATAATTTAGAAAAATTAAAGAAAAACTCCTATTGGTCTTATTATACTTGGTTGGAGTTCCTTTTTAAAGTATGGCTACATTAAGGATTACAAAGTTAGAGGTTTTGAAATCAAGACAGTTTTTGCAAATGGATTGTTTGTTCATATGGTTTCAGACTCAGTGGTCTCCGTTAAGAGCAATCTTTTTCTTTTTTGGGTTGTATTTGAATATATTTGCTTAACTTTTTTGGATGAGTTTGGTTGTAGGCTTTATTTGGTTGTATTTGCTTTATTTTGCTTATTCTCTTTCATTGTACTTTGAGCAGTATACTCTTTTTGTATTTTTTAGCATTAGCCTTTTTTCATTCCCTTAATGAAAAGTTCGTTTCCTTTTCAAAAGGAAATAATCTTCTTTGTTTCAAGCTTAAAGATCACCACTTTCTTTCCTTTTCATCTCACTCACTGCTTCGTTACTACCCAAATAATGTCAATTCAATCTGCTGGCCTGAAAAACAAAAGCCGATTCTTGAAAGAAAACTATTTTATAGGACATCCTGCTTTGGGTTTTCAGTCAGAGAAGACACGAGACACATGATTGGATTTACTAAAGACAACTTGAAAGTTGCTGCTTTACCTAAAAATGGCTAAATTTTAGCTTTCCATTGTGCGTCCGACAAACATTTTCCCAAAACTTTGTGAAAGAGAATTGATTTAATTCTTATTAAAATATGGATTATTTTATCTTCATGAGAAGGAGAGGAAAAACATTTCATTCATCAAAGGCCAGGCTATATTAGTTTGTTTCAACTTAGTTTCTTTTTGTTCTTGAATTAGGACAATCTAATAAATATTTCTTCTTCACCTTTTTCTTTTGCTTTTATTTTCTGTTAGTTTTAAAATAACACTACTATTTTATTTATTAAGATAGGCTTCGCAAGCAAGGTCCTATGATGTTATTGCGGAAGAGTATTATGCTGCACGGTTGGACGCTGCAAAAGCAAAGGAAGAAGGGGACAAGAAAAGACAAGAGACTGCTGGCAACATCATTCGCAAGCTTAAACAGGAGTTGTTAGCTCAAGGTAATATTTGATTTGC

mRNA sequence

ATGGCTCCAAGGAAGAAGCAACAGCAGCAACCCAAGCAGAAGCAAAACAACCGAAAATCCAATTCCACTCCCTCCACCTCCGATGCTCGTCCTTCTTCCTCCGGTCCAAAGCTCAATATCTCCGCCGAAAACGAGACTCGTCTCCGTCGTCTCCTTCTGAGCTCCGGCCGCTCCACTCCATCGGTCACTCCCGCAGATGATTCGCTCTCAAAGGTCCAGAAGGTCAAGAAGCTTAAAGCCGTTTACGAGAAGCTCTCATGCGAAGGTTTTACCAATGATCAAATTGAACTGGCACTCTCCGCTATCGGGGATGGTGCTACATTTGAAGCTGCTCTTGATTGGTTATGCTTGAACTTGCCTAGTAGCGAGCTTCCATTGAAATTTTCAAGTGGAACTTCTTTGCATACACATGTAGGTGGTTCTGTTCGTATACTACAGACTGCACAAAAAGACTGTCCTTCAATGGTAGTCCAATCTTCCAAAGATGAAGATGGAAACAAAGATGTTCCTATTATATTGAGTAGGGGTAAAGATGATGATAAGCTAGATCGGTTCCAATCATCCCAAGCTGAATGGATCAAACAGTATGTAGAGCAGCAAGAAGAGGATGACTATGGAATCTGGGAAGATAACATGGCTGATGAAGGTTCTTCGAAGAAGGCTTCGCAAGCAAGGTCCTATGATGTTATTGCGGAAGAGTATTATGCTGCACGGTTGGACGCTGCAAAAGCAAAGGAAGAAGGGGACAAGAAAAGACAAGAGACTGCTGGCAACATCATTCGCAAGCTTAAACAGGAGTTGTTAGCTCAAGGTAATATTTGA

Coding sequence (CDS)

ATGGCTCCAAGGAAGAAGCAACAGCAGCAACCCAAGCAGAAGCAAAACAACCGAAAATCCAATTCCACTCCCTCCACCTCCGATGCTCGTCCTTCTTCCTCCGGTCCAAAGCTCAATATCTCCGCCGAAAACGAGACTCGTCTCCGTCGTCTCCTTCTGAGCTCCGGCCGCTCCACTCCATCGGTCACTCCCGCAGATGATTCGCTCTCAAAGGTCCAGAAGGTCAAGAAGCTTAAAGCCGTTTACGAGAAGCTCTCATGCGAAGGTTTTACCAATGATCAAATTGAACTGGCACTCTCCGCTATCGGGGATGGTGCTACATTTGAAGCTGCTCTTGATTGGTTATGCTTGAACTTGCCTAGTAGCGAGCTTCCATTGAAATTTTCAAGTGGAACTTCTTTGCATACACATGTAGGTGGTTCTGTTCGTATACTACAGACTGCACAAAAAGACTGTCCTTCAATGGTAGTCCAATCTTCCAAAGATGAAGATGGAAACAAAGATGTTCCTATTATATTGAGTAGGGGTAAAGATGATGATAAGCTAGATCGGTTCCAATCATCCCAAGCTGAATGGATCAAACAGTATGTAGAGCAGCAAGAAGAGGATGACTATGGAATCTGGGAAGATAACATGGCTGATGAAGGTTCTTCGAAGAAGGCTTCGCAAGCAAGGTCCTATGATGTTATTGCGGAAGAGTATTATGCTGCACGGTTGGACGCTGCAAAAGCAAAGGAAGAAGGGGACAAGAAAAGACAAGAGACTGCTGGCAACATCATTCGCAAGCTTAAACAGGAGTTGTTAGCTCAAGGTAATATTTGA

Protein sequence

MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTPSVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLPSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI*

Homology

[Close]

BLAST of Csa3G229400 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.4e-70
Identity = 150/270 (55.56%), Postives = 184/270 (68.15%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KK Q+Q     N   S+S+ S S+ +  SSGPKL ISAENE RLRRLLL+SGRS P
Sbjct: 1   MAPKKKPQKQ----SNKAASSSSSSKSNYQKPSSGPKLQISAENEDRLRRLLLNSGRSGP 60

Query: 61  SV-TPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNL 120
           S+  P  +SLSK QK KKL  VYEKLSCEGF +DQIELALS++ DGATFEAALDWLCLNL
Sbjct: 61  SIPAPISNSLSKAQKTKKLNNVYEKLSCEGFVDDQIELALSSLRDGATFEAALDWLCLNL 120

Query: 121 PSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDD 180
           PS ELP+KFS+G S     GGSV ++ T++ D       S + E+    V  +  +GK D
Sbjct: 121 PSHELPVKFSTGASRFPSTGGSVGVISTSRDDWNDSTDSSVRVEEEEPAV-FVRVKGKQD 180

Query: 181 --DKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
             D L   +SSQA+WI+QY+ +QEE++   WED +       K S  R +DVIA+EYY+A
Sbjct: 181 EEDTLSSDKSSQADWIRQYMMRQEEEELECWEDEVDGIDPRNKVSGPRPFDVIAKEYYSA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQEL 268
           R DA KAKE+ DK+ QE AG  IRKLKQE+
Sbjct: 241 RSDAIKAKEKRDKRGQEQAGLAIRKLKQEI 265

[Close]

BLAST of Csa3G229400 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.6e-50
Identity = 128/277 (46.21%), Postives = 166/277 (59.93%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP KK Q+  KQ +N   S+  P++   +PS + PKL IS ENE RLRRLLL+  R TP
Sbjct: 1   MAPTKKPQKN-KQSKNEIASSLIPNSGHKKPSKA-PKLLISPENEDRLRRLLLNF-RRTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           S  P   +LS  QK KKL  +YE LSCEGF ++QIEL LS++ DGAT E ALDWLCLNLP
Sbjct: 61  S--PVTATLSVTQKRKKLNNLYENLSCEGFLDNQIELVLSSLRDGATLETALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGK--- 180
           S ELP+ FS+G S     G SV ++  ++KD  ++  +SS  E        +L R K   
Sbjct: 121 SHELPVNFSNGASRFPSTGRSVAVISKSKKDW-NVSAESSVQEVKEVPESEVLVRVKSKR 180

Query: 181 ---DDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEY 240
              ++D L   Q SQA+WI QY+++ EE      E+  + +    K S  RS++VIA+EY
Sbjct: 181 DEEEEDSLSSCQPSQADWIHQYMKRLEE------EELESSDDERDKVSGPRSFEVIAKEY 240

Query: 241 YAARLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
              R +A KAK +GDK  Q  AG  I KLK+E+ A G
Sbjct: 241 CVERYNAIKAKRKGDKSGQSQAGLAICKLKEEMNALG 265

[Close]

BLAST of Csa3G229400 vs. Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.3e-11
Identity = 69/264 (26.14%), Postives = 113/264 (42.80%), Query Frame = 1


Query: 11  PKQKQNNR---KSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTPSVTPADD 70
           P  K++N+   K+ S  S+SD+  S +  K  +    E +L + ++S       +     
Sbjct: 52  PGSKESNKQGPKTYSFASSSDSGVSVNHDKSVLKVVIEAKLEKRIISLINEHKKLNSNKG 111

Query: 71  SLSKVQKVKKLKAVYEKLSCEGFTNDQIELALS-AIGDGATFEAALDWLCLNLPSSELPL 130
           ++S     KKL+ +Y  L    F  + IE A++  +  G    AALDWLCLNLP   LP 
Sbjct: 112 TVSGRLTSKKLQDLYMALQKLSFKAEHIEEAMTNTVLYGGDLHAALDWLCLNLPDDALPE 171

Query: 131 KFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDDKLDRFQ 190
            FS    +        +     Q+   +    + K E+G        +  K + +L    
Sbjct: 172 GFSQ-QFVEEEQRARAKFQAPPQRPSAANESATEKGEEG--------ASLKGNPEL---- 231

Query: 191 SSQAEWIKQYVEQQEEDDYGIWEDNMADEGSS---KKASQARSYDVIAEEYYAARLDAAK 250
            +  EWI +Y EQ  +DD    +D++ +E      +K      Y  +  +   AR  A  
Sbjct: 232 -TMKEWILRYAEQGSDDDDD--DDDVKEEEKETTLEKFDPNERYLELTAKLLDARAQATA 291

Query: 251 AKEEGDKKRQETAGNIIRKLKQEL 268
            K++ DK+ Q+ A   IR  +QE+
Sbjct: 292 TKQDKDKQGQKEAQERIRGYQQEM 299

[Close]

BLAST of Csa3G229400 vs. Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.2e-10
Identity = 67/260 (25.77%), Postives = 108/260 (41.54%), Query Frame = 1


Query: 9   QQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTPSVTPADDS 68
           ++P+ KQ   K  S  S +D+  S++  K  +      +L + ++              +
Sbjct: 54  REPRVKQGP-KIYSFNSANDSGGSANLDKSILKVVINNKLEQRIIGVINEHKKQNSDRGA 113

Query: 69  LSKVQKVKKLKAVYEKLSCEGFTNDQIELALS-AIGDGATFEAALDWLCLNLPSSELPLK 128
           +S     KKL+ +Y  L    F    IE A++  +  G    +ALDWLCLNL    LP  
Sbjct: 114 ISGRLSAKKLQDLYMALQAFSFKTKDIEDAMTNTLLHGGDLHSALDWLCLNLSDDALPEG 173

Query: 129 FSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDDKLDRFQS 188
           FS           S    Q+ Q        Q +K +   +D  I     K   +    + 
Sbjct: 174 FSQ--EFEEQQPKSRPKFQSVQIQATLSPPQQTKTKRQEEDPKI-----KPKKEETTVEV 233

Query: 189 SQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLDAAKAKEE 248
           +  EWI +Y EQQ+E++ G     + +E   +K    + Y  +A     A+  AA  K E
Sbjct: 234 NMKEWILRYAEQQDEEEKGEGSKGLEEE---EKFDPNQRYLNLAARLLDAKEQAAAFKLE 293

Query: 249 GDKKRQETAGNIIRKLKQEL 268
            +K+ Q+ A   IRK ++E+
Sbjct: 294 KNKQGQKEAQEKIRKFQREM 302

[Close]

BLAST of Csa3G229400 vs. Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 5.8e-08
Identity = 67/263 (25.48%), Postives = 107/263 (40.68%), Query Frame = 1


Query: 9   QQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTPSVTPADDS 68
           ++P+ KQ   K  S  ST+D+   ++  K  +      +L + ++               
Sbjct: 56  REPRVKQGP-KIYSFNSTNDSSGPANLDKSILKVVINNKLEQRIIGVINEHKKQNNDKGM 115

Query: 69  LSKVQKVKKLKAVYEKLSCEGFTNDQIELALS-AIGDGATFEAALDWLCLNLPSSELPLK 128
           +S     KKL+ +Y  L    F    IE A++  +  G    +ALDWLCLNL    LP  
Sbjct: 116 ISGRLTAKKLQDLYMALQAFSFKTKDIEDAMTNTLLYGGDLHSALDWLCLNLSDDALPEG 175

Query: 129 FSSGTSLHTHVGGSVRILQTAQKDC---PSMVVQSSKDEDGNKDVPIILSRGKDDDKLDR 188
           FS           S    Q+ Q      P +  ++   E+  K  P      K ++K   
Sbjct: 176 FSQ--EFEEQQPKSRPKFQSPQIQATISPPLQPKTKTYEEDPKSKP------KKEEK--N 235

Query: 189 FQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLDAAKA 248
            + +  EWI +Y EQQ E++     +N       +K      Y  +A +   A+  AA  
Sbjct: 236 MEVNMKEWILRYAEQQNEEEK---NENSKSLEEEEKFDPNERYLHLAAKLLDAKEQAATF 295

Query: 249 KEEGDKKRQETAGNIIRKLKQEL 268
           K E +K+ Q+ A   IRK ++E+
Sbjct: 296 KLEKNKQGQKEAQEKIRKFQREM 304

[Close]

BLAST of Csa3G229400 vs. TrEMBL
Match: A0A0A0L9G2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 8.1e-150
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP
Sbjct: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP
Sbjct: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180
           SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD
Sbjct: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180

Query: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240
           KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD
Sbjct: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240

Query: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI 274
           AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI
Sbjct: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI 273

[Close]

BLAST of Csa3G229400 vs. TrEMBL
Match: F6HK50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.8e-80
Identity = 165/274 (60.22%), Postives = 205/274 (74.82%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KKQQQ    K ++ KS S   TS      +GPKL ISAENE RLRRLLL+SGRS P
Sbjct: 1   MAPKKKQQQN---KPSSSKSKSKSQTS------AGPKLQISAENENRLRRLLLNSGRSGP 60

Query: 61  --SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLN 120
             S  PADD+LSK QK KKL++VYEKLSCEGF+ND IELALSA+ +GATFE+ALDWLC N
Sbjct: 61  ASSPAPADDTLSKAQKAKKLRSVYEKLSCEGFSNDHIELALSALKEGATFESALDWLCFN 120

Query: 121 LPSSELPLKFSSGTSLHTHVGGSVRILQTAQKD-CPSMVVQSSKDEDGNKDVPIILSRGK 180
           L S+ELPLKFSSGTSLH + GGS+ I+ TA++D  PS+    + ++D    + I +   +
Sbjct: 121 LSSNELPLKFSSGTSLHANEGGSIGIISTAREDWTPSVYSSGNIEDDEVSGISIRIKGRR 180

Query: 181 DDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
           DDD +D  Q SQA+WI+QYV QQEED+   WED+  D+ S+KK ++ RSY+ IA+EY+AA
Sbjct: 181 DDDSVDSRQQSQADWIRQYVAQQEEDESKTWEDDAVDDYSTKKVAEPRSYETIAKEYHAA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           RL+A  AKE+GDKK QE AG+IIRKLKQEL A G
Sbjct: 241 RLEALSAKEKGDKKGQEQAGHIIRKLKQELSALG 265

[Close]

BLAST of Csa3G229400 vs. TrEMBL
Match: W9QMV9_9ROSA (ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 6.3e-78
Identity = 164/272 (60.29%), Postives = 199/272 (73.16%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRST- 60
           MAP+K+QQQ  KQ+   ++++S+        SSSGP+L ISAENE+RLRRLLL+SGR+  
Sbjct: 1   MAPKKQQQQ--KQRTTAKRTSSS--------SSSGPRLQISAENESRLRRLLLNSGRTAQ 60

Query: 61  PSVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNL 120
           P+  P D+SLSK QK KKLK +YEKLSCEGFTN QIELALSA+ +GATF+A+LDWLCLNL
Sbjct: 61  PAAAPVDESLSKAQKAKKLKTIYEKLSCEGFTNPQIELALSALKEGATFDASLDWLCLNL 120

Query: 121 PSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDD 180
           PS+ELPLKFSSG S     GGSVR+L  ++ D    V  S K  DG   V +      DD
Sbjct: 121 PSNELPLKFSSGISQQIDGGGSVRVLLNSRDDWTPSVDASPKINDGELGVSLKTKGRGDD 180

Query: 181 DKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARL 240
           + LD FQ SQA+WIK+YVEQQEED+   WED+  DEG ++K S+ R YDVIA+EY AARL
Sbjct: 181 ESLDSFQPSQADWIKRYVEQQEEDESRTWEDDF-DEGLTEKISEPRPYDVIAKEYCAARL 240

Query: 241 DAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           +A KAKE+ DKK QE AGNII KLKQE  A G
Sbjct: 241 EAMKAKEKRDKKSQEQAGNIIHKLKQECSALG 261

[Close]

BLAST of Csa3G229400 vs. TrEMBL
Match: A0A061DYH6_THECC (ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.4e-77
Identity = 163/274 (59.49%), Postives = 195/274 (71.17%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KK Q     KQ+NRK NS+   S A  SSS P+L ISAENE RLRRLLL+SG S  
Sbjct: 1   MAPKKKPQ-----KQSNRKPNSSSKASQA--SSSAPRLQISAENENRLRRLLLNSGHSAQ 60

Query: 61  SVT---PADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCL 120
           S T   P  DSLSK QK KKLKAVYEKLSCEGF+NDQIE ALS++ DGATFEAALDWLCL
Sbjct: 61  SQTDSNPVQDSLSKPQKAKKLKAVYEKLSCEGFSNDQIEFALSSLKDGATFEAALDWLCL 120

Query: 121 NLPSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGK 180
           NLP +ELPLKFSSGTS  +  GG + ++    +D    V  S++ ++  + + +      
Sbjct: 121 NLPQNELPLKFSSGTSFQSD-GGPISVISFKHEDWTPSVDASTRIKENLQGLSVRTKGSA 180

Query: 181 DDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
           D+D L+  Q SQA+WI+QY+EQQEED+   WED  +DE S K+ S  R YDVIA+EY+AA
Sbjct: 181 DEDSLNTCQPSQADWIRQYMEQQEEDESKTWEDETSDEDSVKEVSGPRPYDVIAKEYHAA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           RL+A  AKE GDKK QE AGNIIRKLKQEL A G
Sbjct: 241 RLEATNAKERGDKKGQEKAGNIIRKLKQELSALG 266

[Close]

BLAST of Csa3G229400 vs. TrEMBL
Match: A0A061DXK0_THECC (ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.4e-77
Identity = 163/274 (59.49%), Postives = 195/274 (71.17%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KK Q     KQ+NRK NS+   S A  SSS P+L ISAENE RLRRLLL+SG S  
Sbjct: 1   MAPKKKPQ-----KQSNRKPNSSSKASQA--SSSAPRLQISAENENRLRRLLLNSGHSAQ 60

Query: 61  SVT---PADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCL 120
           S T   P  DSLSK QK KKLKAVYEKLSCEGF+NDQIE ALS++ DGATFEAALDWLCL
Sbjct: 61  SQTDSNPVQDSLSKPQKAKKLKAVYEKLSCEGFSNDQIEFALSSLKDGATFEAALDWLCL 120

Query: 121 NLPSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGK 180
           NLP +ELPLKFSSGTS  +  GG + ++    +D    V  S++ ++  + + +      
Sbjct: 121 NLPQNELPLKFSSGTSFQSD-GGPISVISFKHEDWTPSVDASTRIKENLQGLSVRTKGSA 180

Query: 181 DDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
           D+D L+  Q SQA+WI+QY+EQQEED+   WED  +DE S K+ S  R YDVIA+EY+AA
Sbjct: 181 DEDSLNTCQPSQADWIRQYMEQQEEDESKTWEDETSDEDSVKEVSGPRPYDVIAKEYHAA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           RL+A  AKE GDKK QE AGNIIRKLKQEL A G
Sbjct: 241 RLEATNAKERGDKKGQEKAGNIIRKLKQELSALG 266

[Close]

BLAST of Csa3G229400 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-71
Identity = 150/270 (55.56%), Postives = 184/270 (68.15%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KK Q+Q     N   S+S+ S S+ +  SSGPKL ISAENE RLRRLLL+SGRS P
Sbjct: 1   MAPKKKPQKQ----SNKAASSSSSSKSNYQKPSSGPKLQISAENEDRLRRLLLNSGRSGP 60

Query: 61  SV-TPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNL 120
           S+  P  +SLSK QK KKL  VYEKLSCEGF +DQIELALS++ DGATFEAALDWLCLNL
Sbjct: 61  SIPAPISNSLSKAQKTKKLNNVYEKLSCEGFVDDQIELALSSLRDGATFEAALDWLCLNL 120

Query: 121 PSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDD 180
           PS ELP+KFS+G S     GGSV ++ T++ D       S + E+    V  +  +GK D
Sbjct: 121 PSHELPVKFSTGASRFPSTGGSVGVISTSRDDWNDSTDSSVRVEEEEPAV-FVRVKGKQD 180

Query: 181 --DKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
             D L   +SSQA+WI+QY+ +QEE++   WED +       K S  R +DVIA+EYY+A
Sbjct: 181 EEDTLSSDKSSQADWIRQYMMRQEEEELECWEDEVDGIDPRNKVSGPRPFDVIAKEYYSA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQEL 268
           R DA KAKE+ DK+ QE AG  IRKLKQE+
Sbjct: 241 RSDAIKAKEKRDKRGQEQAGLAIRKLKQEI 265

[Close]

BLAST of Csa3G229400 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-51
Identity = 128/277 (46.21%), Postives = 166/277 (59.93%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP KK Q+  KQ +N   S+  P++   +PS + PKL IS ENE RLRRLLL+  R TP
Sbjct: 1   MAPTKKPQKN-KQSKNEIASSLIPNSGHKKPSKA-PKLLISPENEDRLRRLLLNF-RRTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           S  P   +LS  QK KKL  +YE LSCEGF ++QIEL LS++ DGAT E ALDWLCLNLP
Sbjct: 61  S--PVTATLSVTQKRKKLNNLYENLSCEGFLDNQIELVLSSLRDGATLETALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGK--- 180
           S ELP+ FS+G S     G SV ++  ++KD  ++  +SS  E        +L R K   
Sbjct: 121 SHELPVNFSNGASRFPSTGRSVAVISKSKKDW-NVSAESSVQEVKEVPESEVLVRVKSKR 180

Query: 181 ---DDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEY 240
              ++D L   Q SQA+WI QY+++ EE      E+  + +    K S  RS++VIA+EY
Sbjct: 181 DEEEEDSLSSCQPSQADWIHQYMKRLEE------EELESSDDERDKVSGPRSFEVIAKEY 240

Query: 241 YAARLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
              R +A KAK +GDK  Q  AG  I KLK+E+ A G
Sbjct: 241 CVERYNAIKAKRKGDKSGQSQAGLAICKLKEEMNALG 265

[Close]

BLAST of Csa3G229400 vs. NCBI nr
Match: gi|700202481|gb|KGN57614.1| (hypothetical protein Csa_3G229400 [Cucumis sativus])

HSP 1 Score: 537.7 bits (1384), Expect = 1.2e-149
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP
Sbjct: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP
Sbjct: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180
           SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD
Sbjct: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180

Query: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240
           KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD
Sbjct: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240

Query: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI 274
           AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI
Sbjct: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQGNI 273

[Close]

BLAST of Csa3G229400 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 533.9 bits (1374), Expect = 1.7e-148
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP
Sbjct: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP
Sbjct: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180
           SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD
Sbjct: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180

Query: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240
           KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD
Sbjct: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240

Query: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           AAKAKEEGDKKRQETAGNIIRKLKQELLAQG
Sbjct: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQG 271

[Close]

BLAST of Csa3G229400 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 515.0 bits (1325), Expect = 8.1e-143
Identity = 261/271 (96.31%), Postives = 266/271 (98.15%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSS RSTP
Sbjct: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSARSTP 60

Query: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120
           SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP
Sbjct: 61  SVTPADDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLNLP 120

Query: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKDDD 180
           SSELPLKFSSGTSLHTHVGGSVRILQTAQK CPSM VQSSKDEDG++DVP+ILSR KDDD
Sbjct: 121 SSELPLKFSSGTSLHTHVGGSVRILQTAQKHCPSMGVQSSKDEDGDRDVPVILSRRKDDD 180

Query: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKKASQARSYDVIAEEYYAARLD 240
           KLDRFQSSQAEWIKQYVEQQEEDDYG WEDNMADEGSS++ASQARSYDVIAEEYYAARLD
Sbjct: 181 KLDRFQSSQAEWIKQYVEQQEEDDYGTWEDNMADEGSSREASQARSYDVIAEEYYAARLD 240

Query: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           AAKAKEEGDKKRQETAGNIIRKLKQELLAQG
Sbjct: 241 AAKAKEEGDKKRQETAGNIIRKLKQELLAQG 271

[Close]

BLAST of Csa3G229400 vs. NCBI nr
Match: gi|1009118403|ref|XP_015875842.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1 [Ziziphus jujuba])

HSP 1 Score: 314.7 bits (805), Expect = 1.6e-82
Identity = 170/274 (62.04%), Postives = 205/274 (74.82%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KKQQ         +K++ST +      SSSGP+L ISAENE+RLRRLLL+SGRS+ 
Sbjct: 1   MAPKKKQQ---------KKNSSTATAKTQTSSSSGPRLQISAENESRLRRLLLNSGRSSG 60

Query: 61  SVTPA--DDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLN 120
           +   A  D+SLSK QK KKLK++YE LSCEGFTNDQIELALSA+ +GATFEAALDWLCLN
Sbjct: 61  ASAAALVDESLSKAQKAKKLKSIYENLSCEGFTNDQIELALSALKNGATFEAALDWLCLN 120

Query: 121 LPSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKD 180
           LP +ELPLKFSSGTS HT+ GGSV ++ TA++D    V QSS   +    + I      D
Sbjct: 121 LPGNELPLKFSSGTSTHTNGGGSVGVILTAREDWTPSVDQSSTPNEDEPGISIRTKGRWD 180

Query: 181 DDKLDRFQSSQAEWIKQYVEQQEEDDYG-IWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
           D+ LD  QSSQA+WIK+YVEQ+EED+    WED++ DEGS+KK S+ RSYDVIAEEY  A
Sbjct: 181 DETLDSCQSSQADWIKRYVEQEEEDEMSTTWEDHLVDEGSTKKISEPRSYDVIAEEYRVA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           RL+A KAKE GDKK QE AG+IIRK+KQEL A G
Sbjct: 241 RLEAVKAKERGDKKSQEQAGHIIRKVKQELSALG 265

[Close]

BLAST of Csa3G229400 vs. NCBI nr
Match: gi|1009118405|ref|XP_015875844.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [Ziziphus jujuba])

HSP 1 Score: 314.7 bits (805), Expect = 1.6e-82
Identity = 170/274 (62.04%), Postives = 205/274 (74.82%), Query Frame = 1


Query: 1   MAPRKKQQQQPKQKQNNRKSNSTPSTSDARPSSSGPKLNISAENETRLRRLLLSSGRSTP 60
           MAP+KKQQ         +K++ST +      SSSGP+L ISAENE+RLRRLLL+SGRS+ 
Sbjct: 1   MAPKKKQQ---------KKNSSTATAKTQTSSSSGPRLQISAENESRLRRLLLNSGRSSG 60

Query: 61  SVTPA--DDSLSKVQKVKKLKAVYEKLSCEGFTNDQIELALSAIGDGATFEAALDWLCLN 120
           +   A  D+SLSK QK KKLK++YE LSCEGFTNDQIELALSA+ +GATFEAALDWLCLN
Sbjct: 61  ASAAALVDESLSKAQKAKKLKSIYENLSCEGFTNDQIELALSALKNGATFEAALDWLCLN 120

Query: 121 LPSSELPLKFSSGTSLHTHVGGSVRILQTAQKDCPSMVVQSSKDEDGNKDVPIILSRGKD 180
           LP +ELPLKFSSGTS HT+ GGSV ++ TA++D    V QSS   +    + I      D
Sbjct: 121 LPGNELPLKFSSGTSTHTNGGGSVGVILTAREDWTPSVDQSSTPNEDEPGISIRTKGRWD 180

Query: 181 DDKLDRFQSSQAEWIKQYVEQQEEDDYG-IWEDNMADEGSSKKASQARSYDVIAEEYYAA 240
           D+ LD  QSSQA+WIK+YVEQ+EED+    WED++ DEGS+KK S+ RSYDVIAEEY  A
Sbjct: 181 DETLDSCQSSQADWIKRYVEQEEEDEMSTTWEDHLVDEGSTKKISEPRSYDVIAEEYRVA 240

Query: 241 RLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQG 272
           RL+A KAKE GDKK QE AG+IIRK+KQEL A G
Sbjct: 241 RLEAVKAKERGDKKSQEQAGHIIRKVKQELSALG 265

The following BLAST results are available for this feature:

BLAST of Csa3G229400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEXH7_ARATH	2.4e-70	55.56	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana...	[more]
DEXH4_ARATH	3.6e-50	46.21	DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana...	[more]
DHX29_XENLA	7.3e-11	26.14	ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1	[more]
DHX29_MOUSE	6.2e-10	25.77	ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1	[more]
DHX29_HUMAN	5.8e-08	25.48	ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2	[more]

BLAST of Csa3G229400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9G2_CUCSA	8.1e-150	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229400 PE=4 SV=1	[more]
F6HK50_VITVI	1.8e-80	60.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=...	[more]
W9QMV9_9ROSA	6.3e-78	60.29	ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1	[more]
A0A061DYH6_THECC	5.4e-77	59.49	ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 ...	[more]
A0A061DXK0_THECC	5.4e-77	59.49	ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 ...	[more]

BLAST of Csa3G229400 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G58060.1	1.3e-71	55.56	RNA helicase family protein	[more]
AT1G58050.1	2.0e-51	46.21	RNA helicase family protein	[more]

BLAST of Csa3G229400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202481\|gb\|KGN57614.1\|	1.2e-149	100.00	hypothetical protein Csa_3G229400 [Cucumis sativus]	[more]
gi\|778680313\|ref\|XP_011651287.1\|	1.7e-148	100.00	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus]	[more]
gi\|659112040\|ref\|XP_008456036.1\|	8.1e-143	96.31	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo]	[more]
gi\|1009118403\|ref\|XP_015875842.1\|	1.6e-82	62.04	PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1 [...	[more]
gi\|1009118405\|ref\|XP_015875844.1\|	1.6e-82	62.04	PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU091730	cucumber EST collection version 3.0	transcribed_cluster
CU113207	cucumber EST collection version 3.0	transcribed_cluster
CU135111	cucumber EST collection version 3.0	transcribed_cluster
CU152350	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G229400.1	Csa3G229400.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU091730	CU091730	transcribed_cluster
CU135111	CU135111	transcribed_cluster
CU152350	CU152350	transcribed_cluster
CU113207	CU113207	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G229400	Bhi01G001180	Wax gourd	cuwgoB283
Csa3G229400	CSPI03G19280	Wild cucumber (PI 183967)	cpicuB120
Csa3G229400	Cucsa.032690	Cucumber (Gy14) v1	cgycuB003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G229400	Melon (DHL92) v3.6.1	cumedB238
Csa3G229400	Silver-seed gourd	carcuB0043
Csa3G229400	Silver-seed gourd	carcuB0675
Csa3G229400	Watermelon (97103) v2	cuwmbB215
Csa3G229400	Cucurbita maxima (Rimu)	cmacuB320
Csa3G229400	Cucurbita maxima (Rimu)	cmacuB697
Csa3G229400	Cucurbita moschata (Rifu)	cmocuB307
Csa3G229400	Cucurbita moschata (Rifu)	cmocuB687
Csa3G229400	Melon (DHL92) v3.5.1	cumeB166
Csa3G229400	Watermelon (Charleston Gray)	cuwcgB230
Csa3G229400	Watermelon (97103) v1	cuwmB243
Csa3G229400	Cucurbita pepo (Zucchini)	cpecuB205
Csa3G229400	Cucurbita pepo (Zucchini)	cpecuB389
Csa3G229400	Bottle gourd (USVL1VR-Ls)	culsiB211
Csa3G229400	Cucumber (Gy14) v2	cgybcuB109