CU086533 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU086533
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	E3 ubiquitin-protein ligase UPL6
Location	Chr6 : 6500 .. 7621 (+)
Sequence length	418

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAAAACATTAGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTAGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGTTTTTATGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTGCAAGAAAATGGGGATATGTTGAGCATTTTCGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTAGAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACACCATAATAGGTAATTAGTTTTTCCATTTCAACATTCCTTATTAAAAACTTATCCTTTTTAACGTTTTGAATGGAAAAACAGATGTTTGATCTATCATTGTTGATTTTGTTGGCTTTCTATGCTATGATCCTTTAATTGTATATGATATATTT

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU086533 vs. Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 55  SEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RVK 114
           S F  Q LFF+ A++   F++LVE CRLL+ FV  +GD++S+F+G DY     LVD RVK
Sbjct: 93  SSFLRQFLFFFKAQNSGDFVILVETCRLLQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVK 152

Query: 115 KFAYACIQTVHHNR 174
           K A+ CI+ +H NR
Sbjct: 153 KLAFTCIEAIHQNR 166

Query: 175  234
           
Sbjct: 213  166

Query: 235  277
           
Sbjct: 273  166

[Close]

BLAST of CU086533 vs. TrEMBL
Match: A0A0A0KCV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD 111
           DSEFFHQLLFFYNAKHID FMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD
Sbjct: 92  DSEFFHQLLFFYNAKHIDDFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD 148

Query: 112  171
           
Sbjct: 152  148

Query: 172  223
           
Sbjct: 212  148

[Close]

BLAST of CU086533 vs. TrEMBL
Match: A0A0A0KCV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1)

HSP 1 Score: 30.4 bits (67), Expect = 2.1e+03
Identity = 13/25 (52.00%), Postives = 13/25 (52.00%), Query Frame = 3


Query: 21  EKVDRHCFGPRFRVFPPATLFLQCK 80
           EKVDRHCFGP    F     F   K
Sbjct: 82  EKVDRHCFGPDSEFFHQLLFFYNAK 106

Query: 81   96
           
Sbjct: 142  106

HSP 2 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DS+F  Q L+F+NA++ID F++LV+ CRLL++FVQE GD++ +FA +DYL   ALV+ RV
Sbjct: 92  DSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQETGDVVQLFAAEDYLSRCALVNYRV 151

Query: 112 KKFAYACIQTVHHNR 171
           K+F Y CI+ VHHNR
Sbjct: 152 KQFVYTCIRAVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

[Close]

BLAST of CU086533 vs. TrEMBL
Match: A0A0L9VEG6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g172800 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DS+F  Q L+F+NA++ID F++LV+ CRLL++FVQE GD++ +FA +DYL   ALV+ RV
Sbjct: 92  DSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQETGDVVQLFAAEDYLSRCALVNYRV 151

Query: 112 KKFAYACIQTVHHNR 171
           K+F Y CI+ VHHNR
Sbjct: 152 KQFVYTCIRAVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

[Close]

BLAST of CU086533 vs. TrEMBL
Match: V4RF96_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 55  SEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RVK 114
           S FF QL FF+NA+++    VLVE CRL++ FVQE+GD++ +FAG DY   +ALVD RVK
Sbjct: 93  SAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVK 152

Query: 115 KFAYACIQTVHHNR 174
           KFA+ACIQ VH NR
Sbjct: 153 KFAFACIQAVHQNR 166

Query: 175  234
           
Sbjct: 213  166

Query: 235  277
           
Sbjct: 273  166

[Close]

BLAST of CU086533 vs. TrEMBL
Match: V4RXS5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 55  SEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RVK 114
           S FF QL FF+NA+++    VLVE CRL++ FVQE+GD++ +FAG DY   +ALVD RVK
Sbjct: 93  SAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVK 152

Query: 115 KFAYACIQTVHHNR 174
           KFA+ACIQ VH NR
Sbjct: 153 KFAFACIQAVHQNR 166

Query: 175  234
           
Sbjct: 213  166

Query: 235  277
           
Sbjct: 273  166

[Close]

BLAST of CU086533 vs. NCBI nr
Match: gi|778708897|ref|XP_011656310.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 9.1e-34
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DSEFFHQLLFFYNAKHID FMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD RV
Sbjct: 92  DSEFFHQLLFFYNAKHIDDFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVDXRV 151

Query: 112 KKFAYACIQTVHHNR 171
           KKFAYACIQTVHHNR
Sbjct: 152 KKFAYACIQTVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

[Close]

BLAST of CU086533 vs. NCBI nr
Match: gi|659116902|ref|XP_008458320.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DSEFFHQLLFFYNAKHID F VLVEACRLLRKFVQENGD+LSIFAGKDYLLNKALVD RV
Sbjct: 92  DSEFFHQLLFFYNAKHIDDFSVLVEACRLLRKFVQENGDILSIFAGKDYLLNKALVDYRV 151

Query: 112 KKFAYACIQTVHHNR 171
           KKFAYACIQTVHHNR
Sbjct: 152 KKFAYACIQTVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

[Close]

BLAST of CU086533 vs. NCBI nr
Match: gi|700190397|gb|KGN45601.1| (hypothetical protein Csa_6G000010 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 5.5e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD 111
           DSEFFHQLLFFYNAKHID FMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD
Sbjct: 92  DSEFFHQLLFFYNAKHIDDFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD 148

Query: 112  171
           
Sbjct: 152  148

Query: 172  223
           
Sbjct: 212  148

[Close]

BLAST of CU086533 vs. NCBI nr
Match: gi|965600573|dbj|BAT87751.1| (hypothetical protein VIGAN_05114800 [Vigna angularis var. angularis])

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DS+F  Q L+F+NA++ID F++LV+ CRLL++FVQE GD++ +FA +DYL   ALV+ RV
Sbjct: 92  DSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQETGDVVQLFAAEDYLSRCALVNYRV 151

Query: 112 KKFAYACIQTVHHNR 171
           K+F Y CI+ VHHNR
Sbjct: 152 KQFVYTCIRAVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

[Close]

BLAST of CU086533 vs. NCBI nr
Match: gi|920711820|gb|KOM53069.1| (hypothetical protein LR48_Vigan09g172800 [Vigna angularis])

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 52  DSEFFHQLLFFYNAKHIDVFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*RV 111
           DS+F  Q L+F+NA++ID F++LV+ CRLL++FVQE GD++ +FA +DYL   ALV+ RV
Sbjct: 92  DSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQETGDVVQLFAAEDYLSRCALVNYRV 151

Query: 112 KKFAYACIQTVHHNR 171
           K+F Y CI+ VHHNR
Sbjct: 152 KQFVYTCIRAVHHNR 166

Query: 172  231
           
Sbjct: 212  166

Query: 232  277
           
Sbjct: 272  166

The following BLAST results are available for this feature:

BLAST of CU086533 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UPL6_ARATH	5.5e-15	50.00	E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1	[more]

BLAST of CU086533 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCV0_CUCSA	6.6e-23	98.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1	[more]
A0A0A0KCV0_CUCSA	2.1e+03	52.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1	[more]
A0A0L9VEG6_PHAAN	8.3e-18	57.33	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g172800 PE=4 SV=1	[more]
V4RF96_9ROSI	1.4e-17	60.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1	[more]
V4RXS5_9ROSI	1.4e-17	60.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1	[more]

BLAST of CU086533 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708897\|ref\|XP_011656310.1\|	9.1e-34	97.33	PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu...	[more]
gi\|659116902\|ref\|XP_008458320.1\|	1.3e-32	94.67	PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo]	[more]
gi\|700190397\|gb\|KGN45601.1\|	5.5e-23	98.25	hypothetical protein Csa_6G000010 [Cucumis sativus]	[more]
gi\|965600573\|dbj\|BAT87751.1\|	3.1e-18	57.33	hypothetical protein VIGAN_05114800 [Vigna angularis var. angularis]	[more]
gi\|920711820\|gb\|KOM53069.1\|	3.1e-18	57.33	hypothetical protein LR48_Vigan09g172800 [Vigna angularis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G000010	Csa6G000010	gene
Csa6G000020	Csa6G000020	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LAI58	FKNP3UI02LAI58	EST
H0003844	H0003844	EST