Csa6G000020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G000020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionE3 ubiquitin-protein ligase UPL6
LocationChr6 : 7446 .. 8279 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCATCCAGACTGTACACCATAATAGGTAATTAGTTTTTTCCATTTCAACATTCCTTATTAAAAACTTATCCTTTTTAACGTTTTGAATGGAAAAACAGATGTTTGATCTGTCATTGTCGATTTTGTTGGCTTTCTATGCTATGATCCTTTAATTGTATATGATATATTTCTTTTGTTGAAAAGTGATATATTTCTTAGATTTTGTTCAGATATATATAATTGACATAAAGGTTTTTTTACCTTCAGCTAACGAATTCAGACTAATCTTATTTATATATACGATAAGTTGTTGCCTTTATTTTTCCTCCGAATTATTCTTACTTGATGTTGTTCTTGATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCAACTCTATTGTTAGACACAATTATTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGTTACTTCCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAGGTATAAATGTACTTCCTTTTTTTTCTACTTGCAAGTGGTTTTTTTACAGTTATTCTGTTTTGCCATGGATTATCCTCTGCAGGTGTTTTCAGAGAACTAATTCACACTCAAACTATTGCAGGAAAGTGCAGATTCACATTCCAAGAGTTCATTGGCTTCTCTAGAACATCTGCTGTCTCTTTTGAGTTCTCATGTTGGTAAGAAGCCATGTTGTTGCCCACGTGTTGATCCCAATTGGAGTTTCTCCTCTCAAATTCTTACTCTTCCTTTACTGTGGCGGACATTCACATTTCACACCTCTACTTAA

mRNA sequence

ATGCTTGCATCCAGACTAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCAACTCTATTGTTAGACACAATTATTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGTTACTTCCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAGGAAAGTGCAGATTCACATTCCAAGAGTTCATTGGCTTCTCTAGAACATCTGCTGTCTCTTTTGAGTTCTCATGTTGGTAAGAAGCCATGTTGTTGCCCACGTGTTGATCCCAATTGGAGTTTCTCCTCTCAAATTCTTACTCTTCCTTTACTGTGGCGGACATTCACATTTCACACCTCTACTTAA

Coding sequence (CDS)

ATGCTTGCATCCAGACTAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCAACTCTATTGTTAGACACAATTATTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGTTACTTCCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAGGAAAGTGCAGATTCACATTCCAAGAGTTCATTGGCTTCTCTAGAACATCTGCTGTCTCTTTTGAGTTCTCATGTTGGTAAGAAGCCATGTTGTTGCCCACGTGTTGATCCCAATTGGAGTTTCTCCTCTCAAATTCTTACTCTTCCTTTACTGTGGCGGACATTCACATTTCACACCTCTACTTAA

Protein sequence

MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTFHTST*
Homology
[Close]
BLAST of Csa6G000020 vs. Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-27
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1 

Query: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 66
           N+LR+QLL  P  ++    +L++ +  LL P+LPWVCKIV Y  +R  + L+R++  T K
Sbjct: 167 NRLRDQLLVTPEEASISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

Query: 67  ESADSHSKS-SLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTF 122
           ES    + + ++ SLE +L L+  H+G++PCCC  VDP WSFSS ILT+PL+W+ F
Sbjct: 227 ESPRGKTMTGNILSLERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLF 282

[Close]
BLAST of Csa6G000020 vs. TrEMBL
Match: A0A0A0KB45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000020 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60
           MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD
Sbjct: 1   MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60

Query: 61  ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT 120
           ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT
Sbjct: 61  ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT 120

Query: 121 FTFHTST 128
           FTFHTST
Sbjct: 121 FTFHTST 127

[Close]
BLAST of Csa6G000020 vs. TrEMBL
Match: A0A067FXD5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016883mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           +L++QL   P  SNTP TLLL+ ++FL+   LPW CK+V Y LERN + L+R++ +TGKE
Sbjct: 39  ELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE 98

Query: 68  SADSHSK-SSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           S + HS    ++SLE +L+L+  H+G+KPC CP +DP WSF SQILT+P LW  F +
Sbjct: 99  SMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY 155

[Close]
BLAST of Csa6G000020 vs. TrEMBL
Match: A0A067G957_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016883mg PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           +L++QL   P  SNTP TLLL+ ++FL+   LPW CK+V Y LERN + L+R++ +TGKE
Sbjct: 39  ELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE 98

Query: 68  SADSHSK-SSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           S + HS    ++SLE +L+L+  H+G+KPC CP +DP WSF SQILT+P LW  F +
Sbjct: 99  SMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY 155

[Close]
BLAST of Csa6G000020 vs. TrEMBL
Match: B9HX63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15980g PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.6e-31
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           QL++QL+  P +S+  ATLLL+ ++ L+ P+LPW CK+VGY L+RNA+AL R+I LTGKE
Sbjct: 169 QLKDQLVMVPRDSSLTATLLLEAVVLLIDPKLPWACKVVGYLLQRNAFALFREIVLTGKE 228

Query: 68  SADSHSKSSLAS-LEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTF 122
           +  S +    AS LE +L+LL SH+G+ PC CP ++P WSFSSQ+LT+PLLWR F
Sbjct: 229 NTKSDNSIRNASPLERILALLISHIGQHPCICPNINPQWSFSSQMLTIPLLWRLF 283

[Close]
BLAST of Csa6G000020 vs. TrEMBL
Match: V4RXS5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.0e-31
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           +L++QL   P  SNTP TLLL+ ++FL+   LPW CK+V Y LERN + L+R++ +TGKE
Sbjct: 168 ELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE 227

Query: 68  SADSH-SKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           S + H S   ++SLE +L+L+  H+G+KPC CP +DP WSF SQILT+P LW  F +
Sbjct: 228 SMEIHNSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY 284

[Close]
BLAST of Csa6G000020 vs. TAIR10
Match: AT3G17205.1 (AT3G17205.1 ubiquitin protein ligase 6)

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-28
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1 

Query: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 66
           N+LR+QLL  P  ++    +L++ +  LL P+LPWVCKIV Y  +R  + L+R++  T K
Sbjct: 167 NRLRDQLLVTPEEASISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

Query: 67  ESADSHSKS-SLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTF 122
           ES    + + ++ SLE +L L+  H+G++PCCC  VDP WSFSS ILT+PL+W+ F
Sbjct: 227 ESPRGKTMTGNILSLERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLF 282

[Close]
BLAST of Csa6G000020 vs. NCBI nr
Match: gi|700190398|gb|KGN45602.1| (hypothetical protein Csa_6G000020 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.7e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 

Query: 1   MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60
           MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD
Sbjct: 1   MLASRLNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60

Query: 61  ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT 120
           ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT
Sbjct: 61  ITLTGKESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRT 120

Query: 121 FTFHTST 128
           FTFHTST
Sbjct: 121 FTFHTST 127

[Close]
BLAST of Csa6G000020 vs. NCBI nr
Match: gi|778708897|ref|XP_011656310.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-60
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 1 

Query: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 66
           NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK
Sbjct: 167 NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 226

Query: 67  ESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTFH 125
           ESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFT H
Sbjct: 227 ESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTSH 284

[Close]
BLAST of Csa6G000020 vs. NCBI nr
Match: gi|659116902|ref|XP_008458320.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 107/117 (91.45%), Postives = 112/117 (95.73%), Query Frame = 1 

Query: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 66
           NQLRNQLLAAPVN NTPAT+LLDTI+FLLQP LPWVCKIVGYFLERNAYALIRDITLTGK
Sbjct: 167 NQLRNQLLAAPVNPNTPATVLLDTIVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGK 226

Query: 67  ESADSHSKSSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           ESADSH KSSL SLEHLLSLLSSHVG+KPCCCPRVDPNWSFSSQILTLPLLW+TF +
Sbjct: 227 ESADSHPKSSLVSLEHLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPY 283

[Close]
BLAST of Csa6G000020 vs. NCBI nr
Match: gi|641853196|gb|KDO72055.1| (hypothetical protein CISIN_1g0016883mg, partial [Citrus sinensis])

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-31
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           +L++QL   P  SNTP TLLL+ ++FL+   LPW CK+V Y LERN + L+R++ +TGKE
Sbjct: 39  ELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE 98

Query: 68  SADSHSK-SSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           S + HS    ++SLE +L+L+  H+G+KPC CP +DP WSF SQILT+P LW  F +
Sbjct: 99  SMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY 155

[Close]
BLAST of Csa6G000020 vs. NCBI nr
Match: gi|641853200|gb|KDO72059.1| (hypothetical protein CISIN_1g0016883mg, partial [Citrus sinensis])

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-31
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 8   QLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKE 67
           +L++QL   P  SNTP TLLL+ ++FL+   LPW CK+V Y LERN + L+R++ +TGKE
Sbjct: 39  ELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE 98

Query: 68  SADSHSK-SSLASLEHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTF 124
           S + HS    ++SLE +L+L+  H+G+KPC CP +DP WSF SQILT+P LW  F +
Sbjct: 99  SMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPY 155

The following BLAST results are available for this feature:
BLAST of Csa6G000020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UPL6_ARATH5.8e-2745.69E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1[more]
BLAST of Csa6G000020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB45_CUCSA2.6e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000020 PE=4 SV=1[more]
A0A067FXD5_CITSI3.5e-3151.28Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016883mg PE=4 ... [more]
A0A067G957_CITSI3.5e-3151.28Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016883mg PE=4 ... [more]
B9HX63_POPTR4.6e-3155.65Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15980g PE=4 SV=1[more]
V4RXS5_9ROSI6.0e-3151.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004231mg PE=4 SV=1[more]
BLAST of Csa6G000020 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17205.13.3e-2845.69 ubiquitin protein ligase 6[more]
BLAST of Csa6G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190398|gb|KGN45602.1|3.7e-66100.00hypothetical protein Csa_6G000020 [Cucumis sativus][more]
gi|778708897|ref|XP_011656310.1|1.4e-6099.15PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu... [more]
gi|659116902|ref|XP_008458320.1|1.0e-5591.45PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo][more]
gi|641853196|gb|KDO72055.1|5.1e-3151.28hypothetical protein CISIN_1g0016883mg, partial [Citrus sinensis][more]
gi|641853200|gb|KDO72059.1|5.1e-3151.28hypothetical protein CISIN_1g0016883mg, partial [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086533cucumber EST collection version 3.0transcribed_cluster
CU111148cucumber EST collection version 3.0transcribed_cluster
CU148776cucumber EST collection version 3.0transcribed_cluster
CU162946cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G000020.1Csa6G000020.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU086533CU086533transcribed_cluster
CU162946CU162946transcribed_cluster
CU148776CU148776transcribed_cluster
CU111148CU111148transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G000020Cucurbita pepo (Zucchini)cpecuB141
Csa6G000020Bottle gourd (USVL1VR-Ls)culsiB394
Csa6G000020Cucumber (Gy14) v2cgybcuB282
Csa6G000020Melon (DHL92) v3.6.1cumedB404
Csa6G000020Silver-seed gourdcarcuB0073
Csa6G000020Watermelon (97103) v2cuwmbB472
Csa6G000020Wax gourdcuwgoB535
Csa6G000020Cucumber (Gy14) v1cgycuB195
Csa6G000020Cucurbita maxima (Rimu)cmacuB368
Csa6G000020Cucurbita moschata (Rifu)cmocuB357
Csa6G000020Melon (DHL92) v3.5.1cumeB422
Csa6G000020Watermelon (Charleston Gray)cuwcgB480
Csa6G000020Watermelon (97103) v1cuwmB546