CU162946 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU162946
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUbiquitin protein ligase 6 isoform 2
LocationChr6 : 7728 .. 7956 (+)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

ATATGATAAGTTGTCTTTATTTTTCCTCTGAATTATTCTTACTTGATGTTGTTCTTGATAGAAACCAATTGAGGAATCAACTTTTGGCTCCACCTGTGAACTCTAACACACCTGCAACTCTATTGTTAGACACAATTATTTTCTTATTACAACATGAACTCCCATGGGTTTTGTAAAATTGTTGGTTACTTCCTGGAAAGAATGCATATGCGTTGATTAGGGATA
Homology
[Close]
BLAST of CU162946 vs. TrEMBL
Match: A0A0A0KB45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000020 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-12
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 3 

Query: 63  NQLRNQLLAPPVNSNTPATLLLDTIIFLLQHELPWVL*NCWLLPGKNAYALIRD 122
           NQLRNQLLA PVNSNTPATLLLDTIIFLLQ ELPWV         +NAYALIRD
Sbjct: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60

Query: 123  182
           
Sbjct: 67   60

Query: 183  225
           
Sbjct: 127  60

[Close]
BLAST of CU162946 vs. NCBI nr
Match: gi|778708897|ref|XP_011656310.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-14
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 3 

Query: 57  DRNQLRNQLLAPPVNSNTPATLLLDTIIFLLQHELPWVL*NCWLLPGKNAYALIRD 116
           +RNQLRNQLLA PVNSNTPATLLLDTIIFLLQ ELPWV         +NAYALIRD
Sbjct: 165 NRNQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 220

Query: 117  176
           
Sbjct: 225  220

Query: 177  225
           
Sbjct: 285  220

[Close]
BLAST of CU162946 vs. NCBI nr
Match: gi|700190398|gb|KGN45602.1| (hypothetical protein Csa_6G000020 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13
Identity = 42/54 (77.78%), Postives = 43/54 (79.63%), Query Frame = 3 

Query: 63  NQLRNQLLAPPVNSNTPATLLLDTIIFLLQHELPWVL*NCWLLPGKNAYALIRD 122
           NQLRNQLLA PVNSNTPATLLLDTIIFLLQ ELPWV         +NAYALIRD
Sbjct: 7   NQLRNQLLAAPVNSNTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRD 60

Query: 123  182
           
Sbjct: 67   60

Query: 183  225
           
Sbjct: 127  60

[Close]
BLAST of CU162946 vs. NCBI nr
Match: gi|659116902|ref|XP_008458320.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-12
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3 

Query: 57  DRNQLRNQLLAPPVNSNTPATLLLDTIIFLLQHELPWVL*NCWLLPGKNAYALIRD 116
           +RNQLRNQLLA PVN NTPAT+LLDTI+FLLQ  LPWV         +NAYALIRD
Sbjct: 165 NRNQLRNQLLAAPVNPNTPATVLLDTIVFLLQPGLPWVCKIVGYFLERNAYALIRD 220

Query: 117  176
           
Sbjct: 225  220

Query: 177  225
           
Sbjct: 285  220

The following BLAST results are available for this feature:
BLAST of CU162946 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB45_CUCSA2.1e-1277.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000020 PE=4 SV=1[more]
BLAST of CU162946 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708897|ref|XP_011656310.1|9.5e-1476.79PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu... [more]
gi|700190398|gb|KGN45602.1|6.1e-1377.78hypothetical protein Csa_6G000020 [Cucumis sativus][more]
gi|659116902|ref|XP_008458320.1|6.8e-1269.64PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G000020Csa6G000020gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0067306H0067306EST