Csa6G000010 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G000010
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	E3 ubiquitin-protein ligase UPL6; contains IPR000048 (IQ motif, EF-hand binding site)
Location	Chr6 : 5267 .. 7426 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGGTTCTATTTTATTTTTATATTGTGTTAACTTCAAGTGGAAGCTGAGTATTGATCATGATACGAGTTGCCGAGTTTCGCAGAGTCTGTTTTGTTAATTGACGAACTTCATCTCTGATTCGTCCATGAGTTTTTGTTACATTCGACGTGCGGAATTTTATAATGGTAGATAGGGGTGTGGTTTGCCACGCCTGTTTTGCCTGTGTCGTCTCATGTCCTAGGATGGCGTATAATGAAGAGACGGTGAATCGGGTTTGGTCTTTGTAGTAACGAAATAATGATGTTCAGTTACTCTTTCCAGCTCCCCACCATTCATTTTAGGAGGAAATAGAATGTGCAACTCTTTTCCTTTAATATACTATGGGAATTTAACCAACTTGTCTCTTTAAGCAAAGGTCTTACGGATTAAGTATCAGTAGGAAGGGATTTGATCCAGACTGACGTTAGATTAAGAAGGGACAACTACTTCCCAGCTAGACTCAATTCTATATCAAGTTAAAACCAATCAAAGGCTCCATCTTATACTTGGTTTTGGTTTTGCCATATTTTATATCTTAGAATTCTAAGTTGGAGATATATGGATATCCATGAAGGAAAGGACCATATAAAACGTTTTTTAAATTTGAAATGTATCAAGACCACAGATCTTTGTTACGGTAGAGTCTGGCACGTTTGGGATATCCTTGCTTTTCTCAGTCCTGATATTTACCTATTGTTTTCAAAGCTGATAAGAGAATCTCCGGCTTTCATCAATATTCATGAAGTGCAAAACACGTACTTCTTCGAACAGGATTCTGTTCTTTCTTCCCCTCCTTCCCTCCTCTTGAAGCAGGATTATTTCATTTCATATTTTATATTCTACTGATTATTTATTCACTATAGACCCTTGAAAGTAGCTCTAGTCGTATGGATTTTAATTTACTAAATAGATAGGTTTGCGGGGCTTTCATCATGTCAATTCACCTGTTTATCTGCTAATCTTTATTGACTAGTTTATTTCTACAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGTAGAACTTAAGATCTTTATATGGTTATTCTTTGAATGTAACAGTCCTTTTCCTTTCCTTGCTGCCTTCCATTTCAATCGAGTTCCTCTAGTTTTCTTGACGTTATTTGTTCAGTTAATAATAACAATTGTAGATACCAATTTTTAATCTGATCATTGATATATACATATTTTTAATCTCGAATTGTCACTTCAACTCAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTGCAAGAAAATGGTAATTATACACATATTTCCTTCTATGAAAACCAAGTCAATTATCTGTTGTTTTTTATTGACCATTTTTACCTTCAGAAACTTCTTACCTTTGCAGCATATTCATTATTTTGCACCATAATTCCTTTTGTTTTAATATGTTTTATTTTCTTGAAGTTGGAGAAAACTAATTCTAGCCATATAACTGTTATTTGGTGGTTGCTAGTTGACAACTTTCCTTGTCATATGAATTTTAGGATCACTCATTTTTGCTTATGGTAACATTTGAACACGTTATTAGGTGGTACTCAAGCTTATTATGAGGATTTTCCCTTGGGAAATTATTATAAAAGTGACAAATGAAAATATTGATTGGTTTCTGAACCATTGTAGTGCCCTTGTTTGTTATTTGCCCTTATGTTGCTTTATACTTGGTTTTTTAATTGATAACGTCATCTTAAAGTGTTTCTAATTGATAGCACATATCTCTTAGTGTTAGTACTTTCTTACCTTTCTCTCTCTTACATATATAGGGGATATGTTGAGCATTTTCGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTAG

mRNA sequence

ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTGCAAGAAAATGGGGATATGTTGAGCATTTTCGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTAG

Coding sequence (CDS)

ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTGCAAGAAAATGGGGATATGTTGAGCATTTTCGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTAG

Protein sequence

MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRLLRKFVQENGDMLSIFAGKDYLLNKALVD*

Homology

[Close]

BLAST of Csa6G000010 vs. Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.9e-47
Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  +QQN AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           +    R  VR  F +TYG +C+ VDRHCF P S F  Q LFF+ A++  DF++LVE CRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           L+ FV  +GD++S+F+G DY     LVD
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVD 148

[Close]

BLAST of Csa6G000010 vs. TrEMBL
Match: A0A0A0KCV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL
Sbjct: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           LRKFVQENGDMLSIFAGKDYLLNKALVD
Sbjct: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 148

[Close]

BLAST of Csa6G000010 vs. TrEMBL
Match: D7SYH1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00470 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 107/148 (72.30%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRR  LRQQN AAL+IQKCFRGRK
Sbjct: 1   MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           A EA    VREQF  TYG+HC+ VDRH FGPDSEF  QLLFF++A+++ DF  LVE CRL
Sbjct: 61  AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           L+ FV+++GD +++FAG DY    ALVD
Sbjct: 121 LQNFVRDSGDAVNLFAGMDYSSKNALVD 148

[Close]

BLAST of Csa6G000010 vs. TrEMBL
Match: A0A061EP66_THECC (Ubiquitin protein ligase 6 isoform 1 OS=Theobroma cacao GN=TCM_021434 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-54
Identity = 105/140 (75.00%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQK FRGRK
Sbjct: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKYFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
             EA    VREQF+ TYGKHC+ VDRHCFGPDSEF  QL+FF+NA + DDF+VLVE CRL
Sbjct: 61  VVEAEHAKVREQFYQTYGKHCQNVDRHCFGPDSEFLRQLIFFFNAGNTDDFLVLVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDY 141
           L+ FV+++GD++ +FAG DY
Sbjct: 121 LQHFVRDSGDVVGLFAGMDY 140

[Close]

BLAST of Csa6G000010 vs. TrEMBL
Match: A0A0B0NW14_GOSAR (E3 ubiquitin-protein ligase UPL6-like protein OS=Gossypium arboreum GN=F383_08373 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 107/147 (72.79%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQK FRGRK
Sbjct: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKYFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
             E  R  V+EQF+ TYGKHC  VDRHCFGPDSEF  QL+FF NA +++DF VLVE CRL
Sbjct: 61  VVEVERAKVQEQFYKTYGKHCHHVDRHCFGPDSEFLRQLIFFVNAWNMNDFSVLVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALV 148
           ++ FV+E+GD++ +FAG DYL N +LV
Sbjct: 121 IQHFVRESGDVVELFAGTDYLSNHSLV 147

[Close]

BLAST of Csa6G000010 vs. TrEMBL
Match: B9RZW1_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1002390 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-54
Identity = 105/148 (70.95%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN +A+KIQKCFRGRK
Sbjct: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNASAIKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           A E  R  VR+QF+ TYGKHC+ VD HCFGPDSEF  QL FF+NA++  DF VLVE C+ 
Sbjct: 61  AVEIERSKVRDQFYQTYGKHCQNVDWHCFGPDSEFLRQLFFFFNAQNSGDFAVLVETCQR 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           L +FV++ GD++S+F G DY  N+ALVD
Sbjct: 121 LLQFVRDGGDIISLFGGIDYSTNRALVD 148

[Close]

BLAST of Csa6G000010 vs. TAIR10
Match: AT3G17205.1 (AT3G17205.1 ubiquitin protein ligase 6)

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-48
Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  +QQN AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           +    R  VR  F +TYG +C+ VDRHCF P S F  Q LFF+ A++  DF++LVE CRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           L+ FV  +GD++S+F+G DY     LVD
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVD 148

[Close]

BLAST of Csa6G000010 vs. NCBI nr
Match: gi|778708897|ref|XP_011656310.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL
Sbjct: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           LRKFVQENGDMLSIFAGKDYLLNKALVD
Sbjct: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 148

[Close]

BLAST of Csa6G000010 vs. NCBI nr
Match: gi|700190397|gb|KGN45601.1| (hypothetical protein Csa_6G000010 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-79
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL
Sbjct: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           LRKFVQENGDMLSIFAGKDYLLNKALVD
Sbjct: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 148

[Close]

BLAST of Csa6G000010 vs. NCBI nr
Match: gi|659116902|ref|XP_008458320.1| (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 2.4e-77
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           ASEAARF VREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDF VLVEACRL
Sbjct: 61  ASEAARFRVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFSVLVEACRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           LRKFVQENGD+LSIFAGKDYLLNKALVD
Sbjct: 121 LRKFVQENGDILSIFAGKDYLLNKALVD 148

[Close]

BLAST of Csa6G000010 vs. NCBI nr
Match: gi|359477093|ref|XP_003631936.1| (PREDICTED: E3 ubiquitin-protein ligase UPL6 [Vitis vinifera])

HSP 1 Score: 220.7 bits (561), Expect = 1.7e-54
Identity = 107/148 (72.30%), Postives = 123/148 (83.11%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRR  LRQQN AAL+IQKCFRGRK
Sbjct: 1   MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
           A EA    VREQF  TYG+HC+ VDRH FGPDSEF  QLLFF++A+++ DF  LVE CRL
Sbjct: 61  AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDYLLNKALVD 149
           L+ FV+++GD +++FAG DY    ALVD
Sbjct: 121 LQNFVRDSGDAVNLFAGMDYSSKNALVD 148

[Close]

BLAST of Csa6G000010 vs. NCBI nr
Match: gi|590662243|ref|XP_007035894.1| (Ubiquitin protein ligase 6 isoform 1 [Theobroma cacao])

HSP 1 Score: 219.9 bits (559), Expect = 2.9e-54
Identity = 105/140 (75.00%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQK FRGRK
Sbjct: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKYFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120
             EA    VREQF+ TYGKHC+ VDRHCFGPDSEF  QL+FF+NA + DDF+VLVE CRL
Sbjct: 61  VVEAEHAKVREQFYQTYGKHCQNVDRHCFGPDSEFLRQLIFFFNAGNTDDFLVLVETCRL 120

Query: 121 LRKFVQENGDMLSIFAGKDY 141
           L+ FV+++GD++ +FAG DY
Sbjct: 121 LQHFVRDSGDVVGLFAGMDY 140

The following BLAST results are available for this feature:

BLAST of Csa6G000010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UPL6_ARATH	5.9e-47	61.49	E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1	[more]

BLAST of Csa6G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCV0_CUCSA	3.1e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000010 PE=4 SV=1	[more]
D7SYH1_VITVI	1.2e-54	72.30	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00470 PE=4 SV=...	[more]
A0A061EP66_THECC	2.0e-54	75.00	Ubiquitin protein ligase 6 isoform 1 OS=Theobroma cacao GN=TCM_021434 PE=4 SV=1	[more]
A0A0B0NW14_GOSAR	2.7e-54	72.79	E3 ubiquitin-protein ligase UPL6-like protein OS=Gossypium arboreum GN=F383_0837...	[more]
B9RZW1_RICCO	2.7e-54	70.95	Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1002390 PE=4 SV=1	[more]

BLAST of Csa6G000010 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17205.1	3.3e-48	61.49	ubiquitin protein ligase 6	[more]

BLAST of Csa6G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708897\|ref\|XP_011656310.1\|	4.5e-79	100.00	PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu...	[more]
gi\|700190397\|gb\|KGN45601.1\|	4.5e-79	100.00	hypothetical protein Csa_6G000010 [Cucumis sativus]	[more]
gi\|659116902\|ref\|XP_008458320.1\|	2.4e-77	97.97	PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo]	[more]
gi\|359477093\|ref\|XP_003631936.1\|	1.7e-54	72.30	PREDICTED: E3 ubiquitin-protein ligase UPL6 [Vitis vinifera]	[more]
gi\|590662243\|ref\|XP_007035894.1\|	2.9e-54	75.00	Ubiquitin protein ligase 6 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000048	IQ_motif_EF-hand-BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086533	cucumber EST collection version 3.0	transcribed_cluster
CU176421	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G000010.1	Csa6G000010.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU086533	CU086533	transcribed_cluster
CU176421	CU176421	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000048	IQ motif, EF-hand binding site	PROFILE	PS50096	IQ	coord: 45..72 score: 6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G000010	Cla009225	Watermelon (97103) v1	cuwmB546
Csa6G000010	MELO3C021252	Melon (DHL92) v3.5.1	cumeB422
Csa6G000010	ClCG06G004370	Watermelon (Charleston Gray)	cuwcgB480
Csa6G000010	Lsi09G015110	Bottle gourd (USVL1VR-Ls)	culsiB394
Csa6G000010	MELO3C021252.2	Melon (DHL92) v3.6.1	cumedB404
Csa6G000010	Cla97C06G113800	Watermelon (97103) v2	cuwmbB472
Csa6G000010	Bhi12G001750	Wax gourd	cuwgoB535
Csa6G000010	CSPI06G00010	Wild cucumber (PI 183967)	cpicuB314
Csa6G000010	Cucsa.135080	Cucumber (Gy14) v1	cgycuB195
Csa6G000010	CmaCh17G003870	Cucurbita maxima (Rimu)	cmacuB368
Csa6G000010	CmoCh17G003760	Cucurbita moschata (Rifu)	cmocuB357
Csa6G000010	Cp4.1LG12g03340	Cucurbita pepo (Zucchini)	cpecuB141
Csa6G000010	CsGy6G000010	Cucumber (Gy14) v2	cgybcuB282
Csa6G000010	Carg05564	Silver-seed gourd	carcuB0073

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None