CsGy6G000010 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G000010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionE3 ubiquitin-protein ligase UPL6 isoform X2
LocationChr6 : 16420 .. 29521 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAAGCTATAAAGTGCAATTTTCATGTGATTTCCGTAAGAAGAAAAAGAAAAATAGAGGACGAGGAAAACTGTTTAGGTGGGCGCAGTGTCGCACCAAAGAAGAAGAGAACCCATTTCGATTGATTAATCAATAATCTCGTCTTCACCTTCCTACCCTTTTCTTCACAACTAAGTCTCCCTTATACCTTCGACGAAATTTGCACCTTCATCGCCTCGCCTCGCCTCCGATTCTCTCTTTCTAGGGTTCTACTTATTCTTCCTCAATTCCTCAATTCCAATCTTCTTCACAATCCGTTCGCATTGAATTCTATTTCCTCTCCCTAGTCGTGTGCCACTGCTAATCTGCTAGGTCTCAATCAGTTCGATTCCCGACTCGGCAGATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGGTTCTATTTTATTTTTATATTGTGTTAACTTCAAGTTGAAGCTGAGTATTGATCATGATACGAGTTGCCGAGTTTCGCAGAGTCTGTTTTGTTAATTGACGAACTTCATCTCTGATTCGTCCATGAGTTTTTGTTACATTCGACGTGCGGAATTTTATAATAGTAGATAGGGGTGTGGTTTGCCACGCCTGTTTTGCCTGTGTCGTCTCATGTCCTAGGATGGCGTATAATGAAGAGACGGTGAATCGGGTTTGGTCTTTGTAGTAACGAAATAATGATGTTCAGTTACTCTTTCCAGCTCCCCACCATTCATTTTAGGAGGAAATAGAATGTGCAACTCTTTTCCTTTAATATACAATGGGAATTTAACCAACTTGTCTCTTTAAGCAAAGGTCTTACGGATTAAGTATCAGTAGGAAGGGATTTGATCCAGACTGACGTTAGATTAAGAAGGGACAACTACTTCCCAGCTAGACTCAATTCTATATCAAGTTAAAACCAATCAAAGGCTCCATCTTATACTTGGTATGGGTTTTGCCATATTTTATCATCTTAGAATTCTAAGTTGGAGATATATGGATATCCATGAAGGAAAGGACCATATAAAACGTTTTTTAAATTTGAAATGTATCAAGACCACAGATCTTTGTTACGGTAGAGTCTGGCATGTTTGGGATATCCTTGCTTTTCTCAGTCCTGATATTTACCTATTGTTTTCAAAGCTGATAAAGAGAATCTCCGGCTTTCATCAATATTCATGAAGTGCAAAACACGTACTTCTTCGAACAGGATTCTGTTCTTTCTTCCCCTCCTTCCCTCCTCTTGAAGCAGGATTATTTCATTTCATATTTTATATTCTACTGATTATTTATTCACTATAGACCCTTGAAAGTAGCTCTAGTCGTATGGATTTTAATTTACTAAATAGATAGGTTTGTGGGGCTTTCATCATGTCAATTCACCTGTTTATCTGCTAATCTTTATTGACTAGTTTATTTCTACAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGTAGAACTTAAGATCTTTATATGGTTATTCTTTGAATGTAACAGTCCTTTTCCTTTCCTTGCTGCCTTCCATTTCAATCGAGTTCCTCTAGTTTTCTTGACGTTATTTGTTCAGTTAATAATAACAATTGTAGATACCAATTTTTAATCTGATCATTGATATATACATATTTTTAATCTCGAATTGTCACTTCAACTCAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTGCAAGAAAATGGTAATTATACACATATTTCCTTCTATGAAAACCAAGTCAATTATCTGTTGTTTTTTATTGACCATTTTTACCTTCAGAAACTTCTTACCTTTGCAGCATATTCATTATTTTGCACCATAATTCCTTTTGTTTTAATATGTTTTATTTTCTTGAAGTTGGAGAAAACTAATCCTAGCCATACAACTGTTATTTGGTGGTTGCTAGTTGACAACTTTCCTTGTCATATGAATTTTAGGATCACTCATTTTTGCTTATGGTAACATTTGAACACATTAGTAGGTGGTACTCAAGCTTATTATGAGGATTTTCCTTTGGGAAATTATTATAAAAGCGACAAATGAAAATATTGATTGGTTTCTGAACCATTGTAGTGCCCTTGTTTGTTATTTGCCCTTATGTTGCTTTATACTTGGTTTTCTAATTGATAACGTCATCTTAAAGTGTTTCTAATTGATAGCACATATCTCTTAGTGTTAGTACTTTCTAACCTTTCTCTCTCTTACATATATAGGGGATATGTTGAGCATTTTCGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGGTAATTAGTTTTTTCCATTTCAACATTCCTTATTAAAAACTTATCCTTTTTAACGTTTCAAATGGAAAAACAAATGTTTGATCTGTCATTGTCGATTTTGTTGGCTTTCTATGCTATGATCCTCTAATTGTATATGATATATTTCTTTTGTTGACAAGTGATATATTTCTTAGATTTTTTTCAGATATATATAATTGACATAAGGGTTTTTTCACCTTCAGCTAACGAATTCAAATTAATCTTATTTATATATACGATAAGTTGTTGCCTTTATTTTTCCTCCGAATTATTCTTACATGATGTTGTTCTGGATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCGACTCTATTGTTAGACACAATTGTTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTCCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACCGGGAAGGTATAAATGTACTTCCTTTTTCTTCTACTTGCAAGTGGTTTTTTTACAGTTATTCTGTTTTGCCATGGATTATCCTCTGCAGGTGTTTTCAGAGAACTAATTCACACTCAAACTATTGCAGGAAAGTGCAGATTCACATCCCAAGAGTTCATTGGCTTCTCTAGAACATCTGCTGTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGTTGTTGCCCACGTGTTGATCCCAATTGGAGTTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCGGACATTCCCATACTTAAAGGAGGTAGGTTTCTTCCTAATTTATGCCAGAAGATATTCCCTTAGTTGGTGGAGTTCAAATCACTAAGACTTCTTTACTTTCTATGATTATTTGAATCTGGACAAATTTCATCTAAGAAGCACCGACACTTCTAAGATGGCTAGGTGTCGGTGTTGGACACACGCCTCCGAAATGTGTCCGATGCGCCAGCTGGAGTGTCCATTATTTTATTATTATTTTTAATTCTGGACACGACCAGACACGGCTGGGACACTTCTGGGACATGGAACCGGCATATTTCAGAAGAAAAAAATTACTAAAAATAACATTTTAAAAACCTAAATGCCTAGCCTGAAGATAGACCATCAACCCCACATTTTAGGCTTATTATTATTGTCTTTGTCCTTTTCTTTTCCTAAAAAACAGGCCTCCTATAGCCAAGATATCGCTCATTTCTCCACGTCCAAACGGTCACACCCCAACATTCATGTCCAAACCTTCATGCATAAATTCATGAATTCTATGGTGTTTAACTTGTAATTTTGATGTTTTCAAATGAAATGTTTTGCAGTATGTTTATATGAATGGCATATGTTTAATTTTTTTTGAATAAAAGAATAATGTACCCGAATGTGTCTTGTCCTAGTTTTTTTAAAAATTGGCGTGTTGTGTGTTGGTGTTCGTGCTTCCTAGCATTTCATGTAGTTCTTTTATTGGTGGGGGTCCTTTGGCTCTCTTGCTTCTCATGGTGTCAATGTATTCTTTTTTTTTGAAATGGAGACAAGCTTCTTTATTGATAATAAACTCAAAGTACAAGAGAGTTATACAGTGAGAGTAATGGACCTAGAAAGGCGAGAGAGAGACGATCAGTAAGTGCACCTGGACATCTCAACTAGGTTGACACCCTCTTAGCTCCCTCATCAATATATTCATTAATTTGTTTCTTATGGAAGGAAAAAGAATTATGCCAGCAGTACATGTTTGATTGGTATTCGACAACTTCACCTTATTTATTACTCCTACCTTACATATATTAACGGTACATGTTTGATTGGACTTCTTTGTAGCTTTTAAACTTTTTTCAAGCACACACTTACCTAGATTCCTTTTTTCACTAACCAGTGTACCTTTTTTTTAGGCTTTTGCTAGATGGGGGTTGATTGGGCATTACATTCATCAGATGGCATCCTGTGTTCAGCATTATGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGGTATGCTTGCCTTCTTGGAAATTTATTGGAAATTTCCAGAACCGCTCTATCTCAGCCTGACTGCTCATCTGAATTGGTAAATAGCTGACATATATTAGAGTTTTTCTTTACACATTTCACACCTCTCTCTACCCAATGGACAAAGTTGCATGTGTCATCCTCCACTAGGTTTGTGTACCTTGCTGTTTGGATATAATGGTGTTACAGATGGTCTAAAGGTCATGTTTTCTCAAAAATGAGAAACATAATATGCATGTACTTCATTTAAAAAAGAAATTTTTTTTTATAGATTTTTTTTTAAAAGATCTTTTTAAGTACAACTTGGTGTGGGGGGATTTGAAATATGGACCTCTTGTTCTTGGGAACAGACAGATGCCAGTTAAGTCAAGCTCATGTTGGCAATTCTTTATTGTAGTGAGAGCAATTACTTAAATCCAGCACACTCTAAGGTTCTGTGGTAATTGAAATTTATTTTTTAGCCCACTTTTTATGTCCTTTGTTGTGGATAGGCAGTAGATCTTGCTTCTGTTACAACATTCTTGTTGGAACTACTTCCGTCGATGAAATCGCCTCGTAGAGATATAAAAGAGAGTATGTATTCACCATCTTTTTTTTCTTTTTTGGGTATTAAGTGACAATTGATGAAAATTTTCTAATTCATCATACTTTCTTTCTAAGTGGTAGATGACTTTTTGTATATTTATGCTGTCAATAGGTGCCGCATTGGGCGATGATGATGTGGTTGTGTCTGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGTATTCCATCTTCTGGTTTTGATGTCATTGAAGGAAACGTTTTAATTAATCAAAACATCTCTAGTTCTTTCAACAATTTGGAATTGGTTTGTGCTTCCCAGGCAAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGCCCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCACGTCACTTTCAATACCCTACCTCTAGAGCAAATTATGACTGTTCTAGCATACAGAACGGAGTTAGTTCCAGTACTCTGGAGTTTTATTAAAAAGTGCCACGAGAATCAAAAATGGTCATCCTTTTCGGAGAAATTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTTTGTCCTGTGTACAAGTAAGATTATCTTCTTTATTCCTGTTCATCTACTTTTGAATTTCGCTTTAATTCCTCATCTGATGTTATATAATTATATGGTATGTTATAAGATTCGTCATGTCCTGATTACTTCTTTCCTTATCGATCAGGCACATGCTGACAATCATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTATCGTTAAAGGACATCAGATGCCTGATTGTTATTTTAAGACAGGTGAGCGCTTTAATTCCATCTGTAATTACAGTGCTGCAATACCATGCTGAGTAGAAACATTTTTAACAGGGTTGTTCAAGTTTTTTACCATTTCTGGACAAACACAGATTCTTTAGATTTTGTTGAAGAAGAATTAGAAGGGTTACTTAGTTTAGGATAGTTGGATTTGTAATGTTGCCATTTATTGTACTCTCTGCAGGCCCTCTGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACATGCTGCTAGTGGCCATGCAAATAAGAGGCACACCGTTGACTTTATTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTATCACAGGTATATCAGTTCTTGTGCTTTTCCCAAGTTGGTTGCTTTAAATTCTATTATCCCATTTGATATTTTATGAAGTTATTTGCTGATATGAGTACAAGAGATTTACCTGGCAGAAAGTCTTTTCTTCCTGCCGTTAGCTTCTTTGACGCTTCTTGAGAAAGGCTTGTGTGTAACTATTTGCGTCATTTTGTCGGTCTACTAAGACTAATTTGTCTCATTGTAGTTGCAAGACTGGAACAATAGACGGCAGTTTACACCACCCAGTGACTTCCATGCTGACGCGGTGAATGATTATTTCATTTCTCAGGTAATTGTTCTCAATGAATGTTTTGGTTCTAATGACCTGCTATCTGATCCTAATTCTAATTATTTACTTGGCCTTGATTCTTTGTAGGCAGTGATAGAAAATACCAGAGCAAATGATATACTTAAGCGAGCTCCCTTTTTAGTACCGTTTACTAGCAGGGTTAAGATTTTCACTGTAAGCAAGTTATTGTTTGGTTTCCTTATCCACAATATTGAATTTCTTGGATGACTGTTAGTTATAGAAATATGTAAGATATTTTTTTATTTATGGTTACTTTCTCTATAACTCATTTCACAGTCACAACTAGCAGCAGCTAGGCAAAGGAATGGATCCCTTGCTGTTTTTGCCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTCAGTCAGATGAGTGCATTGTCTGAAGATGATCTTCGAGGATCGGTAATTTCAGACTTCCATGATTTATGAAAAATGAAACTGTTATCTTACTTTCTTCTATCTTTTTTTTTGCCCTCATGAAAACGACCCCTTCCCTCTTCTGCATCCTATAGTTGCAGAGTTACTTGTAATTGTTTATTAGTTTTTTCTTGTTTGTGTTGGGTCAATTGCTTCACTTTTTTGCATGCAGATACGTGTGTCTTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTTAAAGATTTCATGGAGAACATTACGCGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGTTATCACGCATTCCTTATTATTAGCATGGCATGGCTTTGTTAATCCTGTAGTATTATTGGATAACAAGAAGCGCGGTGAGACTGCTATAGTTGTTTGAAATCGCTTTTCAAAATAAAAATAGTTGTGAGATCACATTTCAATATAAAAATTGGTTGTTTGAAATATATTTCATAAAATTTCAGTAATATGTGGATATGTATTGTTCGGTTTTTCTAATTTAAGTTATTTTCTGCTTGGTAATCCAGGAAACCGCTGATCATTTGCTCTACCCCAATCCTGGTTCGGGAATGATACACGAGCAACATCTCCAGTTTTTCCATTTCCTCGGAGTTCTTTTGGCAAAGGTATGGCCATAATTCCCGATCATACATGGAATTTACTTTGGTTGATTAGTTTTTTCTTTCTTTTGGATAAGGATATCCTGGTCTTGGCCTTATCAGGGAAGATTCTTGTATATCTTTCATCCCATACTTTGGTTGAATTTTGGAACATTAATGTATCGCCTGAATTCATAAATACAATGTTATAATTTGAAATCTGCTGTCTTCCTACATTATGCATGTTTTTCTGTTATTGAAGTTGCTGCCTGGCTGTGCTAAAAGATCTCAATCACATTAAGTGATTTTTGACATAATGTTGTTGTTTTACCCTTCTTCCTGTAGGCCATGTTTGAAGGAATTCTTGTTGATATACCTTTTGCAACATTCTTCTTGAGCAAGTTAAAACAGAAGTAAGGTTTTTCAAGATTTACTGTCTTACTGTTTTGTATTTTGTGCTGATCCACTAATCGTAGTATTGATGGTCATGACAATGACTATTTGCAAGTTACTTGAATTTTTAGGGTTCTAAAAATCTTACATTTTATGCTGGGTGCACCGGCTACTAATGAGATTGTCAATTGCTAACTTCCAAATGTTGAATTTGGGATTTCCATGCTACATTCACTTTCTTGATCTGCAATTACATATATACTGGAATAAAGTCTCATCTGAACTGTACATTGCTTTCTTTATAATTTATGAGAGTTTAATATTGCATGGTTGCATGGTATAAAGATGGAATAATATTTAACCCAACATTGAATATTTCCAATGTTTATCATCACAACAGGTATAACTATCTGAATGACTTGCCATCCTTGGATCCTGAATTGTATCGCCACCTTATTTTCTTAAAGGTGTGTATTCCCTGGTATCACTTTTTCTAGTATCCTGGCAGAATCTTTTTCTCACTCCTTATCTTAAATTCTTGGTCTTCCCTTCTGATTTTTCTGGACAGCATTATGAAGGTGACATTTCTGAACTAGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACTGAAGAAGAGCTACTTCCTGGAGGAAAAAACCGTCGTGTCACCAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGGTATTGCCACATCATAGTTTGTCCTTGGTTTATCCAATGTGTCTCCCTACCTCAATGTTGATTGAAAACATGTCCTCAGATACGGCAGCAAAGTTCTCATTTTTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGACATGTTCAATGAGCATGAATTCCAGGTATCACTGATTCAGTGAATTAGTAACGTGGTTTGCATGAAAAGGCTGTTTTTCTGTTATATAATCTCTTGATGACTCGTTTATCATTGCACATCAACTGCCTCATGTGCCTTGAATCCTGTTTCAGGCTAGTATTAATTATACTATTTGGAAAAGAAGTATGTTAGAGGAGGAACATTTTTTCTCCTAGACCATACAAAGTCAGTAGGGTTAAGCACTTAGATTTGCATTTTTATTCTTCTTATTGTGTGGGTGGGGGGAGGGGGAGGGGGTTAGTAGTTTTGATAATGTGCCATTGTCGACCTTTAATTTTCATGTGACGTGAAACACTAAACTAATTAAAGCAAGAACCTAGAATGATTAGGAGTACACTTAACAGCAACCAACCAAAGCCTAAACCCTAGAGGCATTAGGGTCTTCCTTATTGAGTTCACCTGAAGGGATAGATGTGGGTTTCCTTGATGATGTGAAGATTCAGGTTCAGGATAAGGAAACTAGTCTTCCTTAAGATTCAGGTTCATTTTCGAAGAGGCATAATGCTCGTAAAAGTGTAGAGGCAGAATTTTACTAATCATTAAAATCTGAGAAATAAACAAAGTGAACTAGATTATTTTTAGCCGTACATGGACTCTAATTGGTGACAACTGAAGTCCTTGTAAGGGGAAAAGATGTGGGAAAAAAAAATTCCCTTGCGATGGGAAATGATAAGAAAAACATAAAGAGAACCCTAATTTAGGTCAAATCATGGACCAATGGCTAAATACTATGAAGTTTTGTGATAGACCCCCAATTATACACCAGTACAGTAGAAGGAAGAAGAAGCAAGGTTGACCGCACGTGCTAGGGAGAATAGCCTTAATAGTTTTAATATTGTTAGTAGATGCTTCCATAATAAAATAATAGAGCATAAGTAGGAGTTTGTTATGGAGAGAGAAAGTTAGTTAGAGTATAAATAGGAGTTGGTTATGGAGTATAAATAGGAGTCTGTTGGGAGGGAGAAGGGTGAAGAATTAGGGCTGCAATATTCCTTGGAAGAGAGGAAGGGCAGGGGGTTAGGGTTCTTTAATTTTTCTTTTACTGCTTTTATATTGTAATTCTGTTGCAGATATCAATAAATAGAAACACTATATCAGTGTTCTATCATTTTGTTGCTAGTCTTTTGTGGTTCCAGGATAAATCGAGTAGGTCTTTGACTGGTCTATTTCATTTCAGCTTTTAATATCAGGTTCACTGGACAGCTTGGATGTTGATGACCTACGGACACATACTACTTATTCAAGTGGTTATCATAGGGTAAGTTCTATTAAACCCTTTTTTCTACATATGTATTTTCTTTTCTTTTCTTTTCTGCGTAATTGTTTTTCATATTGTGTTCGATAAAATTTTGAAAATTTGAAATCTTGCAAGAAGATTAGTTACAATTAATCTTCCTTTGGAGGTTGAACAATTCTTGGTTTAGGATATCGAATACTAGATTTATTGTAGTGCAATCGGAATTGTGATGTCAAGTCAATTAAATTTCATAATTGTAGATGATGTTGGAGGATCTCACCTTGGTAATTGGGAGATGGTTTTGAAGTCTTTGGAGTTTAGGGAGTTGGTCATCGTTTAGATTCTTTTTAATATTTTTCAATTAATTTTGAATTCTTACAATATATATGCCTGTATTAGTGTTTGAAACTGGGCGATAAATTGATTACCGTTATTCAGACTTCTAGTCCTCTCTTATGTTTCTATGACTATGAAAACAAACTTTGGACTTGTATTGTTTGTGATGCTCTGTTTGGTCAGACACAACCATGATCAAGAAATTTGTGATAGGAAACGGAGAAATATCTTCACTTTTTTAATCATGTTCTTTTATGCTTCTGCTGGATTGAAAAATCAAATGTGGGAACTTCGGAATTTGAATTTTTATTTCATGCTTTCAGGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGAAAACCAAAAGAAATTTCTGAAGTGAGTATTTTCATTACACATCAGTTGGTTACTTCTTGTCTCAAGTTGGCTTAAAGAAAAACTGAACTTCAGAAATATAATAATTGGATCTTGCTTTTTCATCAGGTTTGTAACTGGTTGCTCTCGAGGACCGCTTCTTGGCTTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGTGATTAGTGTTTTGTTCATTTTTCTCCATTTACCGGGTAAAATTTGTATCCTCATTATTCTTAATTATTTGTTCTTTGGTTTCCCCTAAAGGGGATAAGTTGGTTCCTTCTAGAGCTTAAACTAATTTATCCTGCTAGCAAAAATCATGTGAAAAAGTAACTCAGTATGAGACAAGGTACATTTCTGACTAGTACTTTGTGAGACATTCCTGGCTGCATGCTTGAGACTGTATTCAGGCACATATATATTAGCGTGGGACATAAAAGAAATGGGATAATTGCAAATATAACAATTAGATTCAAAATAATTAAGTATATAGCAACATTTTAAAAAAATTGCAACTATAGCAAAATCTAAAGTCTATAAATGATAGAAGTCTTTTACTGAAATATTGGTCTATCACTGATAAACCATAAGAGTATATCACCGTCAGACGTCTATCACTTATAGACTTTGCAGTTTTTTTAAATTGTTGCTATGTACTTAATTATTATTCCCAAATCACTATCCATTATAACTACCCTAAAAAATTTGCTGTTTAAGATCCAATTTAACTTCCATGGGCACAAATATCATGGCCTACAAGGACAGTTGTATTCAGATTTATATTTCATTGATCTAGATGGGTAAGTTATTAATTTGGTAGTAGTTTTTTCTTTTTGTTTCAGGGCTGCTGGCAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGGTGCGTCAATGTACATACAAAACATTTCTTGTGTTTCTTGTTAAACTAACAATGTCATCCTTTGGTTGAAGTTCTTCCATATGTTTTTATGATGCAACTAATCAGAGATTAGGAAACCACTATAAAAAAAAATTAGTTACCACTACCTCTAAAAGACACCGTAAAAAGAGATGCTGGGAGCACGGTGAAATTGCCACTTGCTATGATGCCAGAGGTTGTCTTCTTCGTTAAATTGTAGCAAAATTAAGAGTATCTTTAGAACAGCGCCACTTACAATGTCATAATTTTAAAATGATAAAAATCACGTGTCATGTTCAAAATGACTCTGAGGAACACATTTTAATCATTGAAAGTCAAATTTGGTGCTTGAAAATTGGTTTTAAGTATAAAATCAAACATTAATTGATTTAGATTCTCAATAATTAAAGGCATGCCAGAGTAGCTTCTAACATAGGCAGAGTGATTGTAACTCTAAAAAATCATTCTCAAACATGTCCTAAGTTTTTCACCTTCACAGCTCGTCCATTATGGCTGGGTTTTCTTTTTTACTTGGCCATACTACAACATCCAGTCCACCAAGAAGTTTTTATTTTTCGTTATTATGTGAAACTAACACCAATTTGGTTGCATAACTTGGTTAGGTTTATTAAGTCTATTGATTTGTGGATGAACTAACACATATACATCTTTTCTAAAAAAGGATAAAAAAATTTGCATAAGTTTTCATTTTCACAACTCTATGATTTATGAACATTGCAGCAAGGAGCAGCTGGCAAACAAATTGCTTTATGCCATAAGTGCAGATGCTGGTTTTGATCTAAGTTAATGGTAAGTCGCACCCTGCTCAATATTCCTTCTATTCTCCGCTTCATCCTTCGCCTTGGACCGGTCTTATTAGAAAAAAAGAATTTCAGCTTCTTCTATGTGGAGCAAGTTGGAGGAACAGATAACCTGCAAAAGTAATCCACATTCAAATGTTAAATTATTACAAATGCAGAGGAAGGAATAGATTGAGCATGGATCAAACACTCGAAACCCCATTTCTGGCCCGCACGATTGGTTGA

mRNA sequence

TTATAAGCTATAAAGTGCAATTTTCATGTGATTTCCGTAAGAAGAAAAAGAAAAATAGAGGACGAGGAAAACTGTTTAGGTGGGCGCAGTGTCGCACCAAAGAAGAAGAGAACCCATTTCGATTGATTAATCAATAATCTCGTCTTCACCTTCCTACCCTTTTCTTCACAACTAAGTCTCCCTTATACCTTCGACGAAATTTGCACCTTCATCGCCTCGCCTCGCCTCCGATTCTCTCTTTCTAGGGTTCTACTTATTCTTCCTCAATTCCTCAATTCCAATCTTCTTCACAATCCGTTCGCATTGAATTCTATTTCCTCTCCCTAGTCGTGTGCCACTGCTAATCTGCTAGGTCTCAATCAGTTCGATTCCCGACTCGGCAGATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGCTTTTGCTAGATGGGGGTTGATTGGGCATTACATTCATCAGATGGCATCCTGTGTTCAGCATTATGCAAATGCAGTAGATCTTGCTTCTGTTACAACATTCTTGTTGGAACTACTTCCGTCGATGAAATCGCCTCGTAGAGATATAAAAGAGAGTGCCGCATTGGGCGATGATGATGTGGTTGTGTCTGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGCCCTTATGATGGTCCTGATGATAAAGAGGCCCTCTGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACATGCTGCTAGTGGCCATGCAAATAAGAGGCACACCGTTGACTTTATTCAATACAGGAGCTCCTATCACAGGGCTGCTGGCAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGAGGAAGGAATAGATTGAGCATGGATCAAACACTCGAAACCCCATTTCTGGCCCGCACGATTGGTTGA

Coding sequence (CDS)

ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGCGTGCGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTATGGCTTTTGCTAGATGGGGGTTGATTGGGCATTACATTCATCAGATGGCATCCTGTGTTCAGCATTATGCAAATGCAGTAGATCTTGCTTCTGTTACAACATTCTTGTTGGAACTACTTCCGTCGATGAAATCGCCTCGTAGAGATATAAAAGAGAGTGCCGCATTGGGCGATGATGATGTGGTTGTGTCTGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGCCCTTATGATGGTCCTGATGATAAAGAGGCCCTCTGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACATGCTGCTAGTGGCCATGCAAATAAGAGGCACACCGTTGACTTTATTCAATACAGGAGCTCCTATCACAGGGCTGCTGGCAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGAGGAAGGAATAGATTGAGCATGGATCAAACACTCGAAACCCCATTTCTGGCCCGCACGATTGGTTGA

Protein sequence

MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMAFARWGLIGHYIHQMASCVQHYANAVDLASVTTFLLELLPSMKSPRRDIKESAALGDDDVVVSDQEIELALNKDVEKQICDAIDPRFLLQLANALFGQISRVSGPYDGPDDKEALWQLLWVSPTAPSNSAKHAASGHANKRHTVDFIQYRSSYHRAAGNANEEALDRLPTSATCMNLLKLPPYRRGRNRLSMDQTLETPFLARTIG
Homology
[Close]
BLAST of CsGy6G000010 vs. NCBI nr
Match: XP_011656310.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 3.4e-104
Identity = 262/587 (44.63%), Postives = 262/587 (44.63%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM        
Sbjct: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFMVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LRKFVQENGDMLSIFAGKDYLLNKALVDXRVKKFAYACIQTVHHNRNQLRNQLLAAPVNS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 NTPATLLLDTIIFLLQPELPWVCKIVGYFLERNAYALIRDITLTGKESADSHSKSSLASL 240

Query: 241 -------------------------------------------------AFARWGLIGHY 263
                                                            AFARWGLIGHY
Sbjct: 241 EHLLSLLSSHVGKKPCCCPRVDPNWSFSSQILTLPLLWRTFTSHLYLKEAFARWGLIGHY 300


HSP 2 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 979  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1008

[Close]
BLAST of CsGy6G000010 vs. NCBI nr
Match: XP_008458320.1 (PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99
Identity = 253/584 (43.32%), Postives = 255/584 (43.66%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           ASEAARF VREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDF         
Sbjct: 61  ASEAARFRVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFSVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LRKFVQENGDILSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 NTPATVLLDTIVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGKESADSHPKSSLVSL 240

Query: 241 ----------------------------------------------AFARWGLIGHYIHQ 263
                                                          FARWGLIGHYIHQ
Sbjct: 241 EHLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARWGLIGHYIHQ 300


HSP 2 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 982  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1011

[Close]
BLAST of CsGy6G000010 vs. NCBI nr
Match: XP_022958808.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 340.5 bits (872), Expect = 6.1e-90
Identity = 239/584 (40.92%), Postives = 247/584 (42.29%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
            SEAA   +REQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKH  DF         
Sbjct: 61  VSEAACCRMREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LQQFVRDNGDVLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 STPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETEDSHPGSSVSSL 240

Query: 241 ----------------------------------------------AFARWGLIGHYIHQ 263
                                                          FAR GLIGHYIHQ
Sbjct: 241 ERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQ 300


HSP 2 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 982  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1011

[Close]
BLAST of CsGy6G000010 vs. NCBI nr
Match: XP_023547996.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.5 bits (872), Expect = 6.1e-90
Identity = 239/584 (40.92%), Postives = 247/584 (42.29%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
            SEAA   +REQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKH  DF         
Sbjct: 61  VSEAACCRMREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LQQFVRDNGDVLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 STPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETKDSHPSSSVPSL 240

Query: 241 ----------------------------------------------AFARWGLIGHYIHQ 263
                                                          FAR GLIGHYIHQ
Sbjct: 241 ERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQ 300


HSP 2 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 982  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1011

[Close]
BLAST of CsGy6G000010 vs. NCBI nr
Match: XP_023006490.1 (E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita maxima])

HSP 1 Score: 337.8 bits (865), Expect = 4.0e-89
Identity = 237/584 (40.58%), Postives = 247/584 (42.29%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
            SEAA   +REQFHDTYG+HCEKVDRHCFGPDSEFFHQLLFFYNAKH  DF         
Sbjct: 61  VSEAACCRMREQFHDTYGEHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LQQFVRDNGDVLSIFAGNDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENS 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 STPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETEDSHPSSSVPSL 240

Query: 241 ----------------------------------------------AFARWGLIGHYIHQ 263
                                                          FAR GLIGHYIHQ
Sbjct: 241 ERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQ 300


HSP 2 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 982  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1011

[Close]
BLAST of CsGy6G000010 vs. TAIR10
Match: AT3G17205.1 (ubiquitin protein ligase 6)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-34
Identity = 130/439 (29.61%), Postives = 161/439 (36.67%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  +QQN AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDF--------- 120
           +    R  VR  F +TYG +C+ VDRHCF P S F  Q LFF+ A++  DF         
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 ------------------------------------------------------------ 228
                                                                       
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240


HSP 2 Score: 55.1 bits (131), Expect = 9.3e-08
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAG+A+ E++DRLPTSATCMNLLKLPPY+
Sbjct: 978  RAAGSASNESVDRLPTSATCMNLLKLPPYQ 1007

[Close]
BLAST of CsGy6G000010 vs. Swiss-Prot
Match: sp|Q8RWB8|UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-33
Identity = 130/439 (29.61%), Postives = 161/439 (36.67%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  +QQN AALKIQK FRGR+
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDF--------- 120
           +    R  VR  F +TYG +C+ VDRHCF P S F  Q LFF+ A++  DF         
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 ------------------------------------------------------------ 228
                                                                       
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240


HSP 2 Score: 55.1 bits (131), Expect = 1.7e-06
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAG+A+ E++DRLPTSATCMNLLKLPPY+
Sbjct: 978  RAAGSASNESVDRLPTSATCMNLLKLPPYQ 1007

[Close]
BLAST of CsGy6G000010 vs. TrEMBL
Match: tr|A0A1S3C746|A0A1S3C746_CUCME (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN=LOC103497770 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 9.6e-100
Identity = 253/584 (43.32%), Postives = 255/584 (43.66%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK
Sbjct: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           ASEAARF VREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDF         
Sbjct: 61  ASEAARFRVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFSVLVEACRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LRKFVQENGDILSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNP 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 NTPATVLLDTIVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGKESADSHPKSSLVSL 240

Query: 241 ----------------------------------------------AFARWGLIGHYIHQ 263
                                                          FARWGLIGHYIHQ
Sbjct: 241 EHLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARWGLIGHYIHQ 300


HSP 2 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 982  RAAGNANEEALDRLPTSATCMNLLKLPPYR 1011

[Close]
BLAST of CsGy6G000010 vs. TrEMBL
Match: tr|A0A0A0K808|A0A0A0K808_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000030 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.7e-60
Identity = 150/298 (50.34%), Postives = 150/298 (50.34%), Query Frame = 0 

Query: 113 AFARWGLIGHYIHQMASCVQHYAN------------------------------------ 172
           AFARWGLIGHYIHQMASCVQHYAN                                    
Sbjct: 12  AFARWGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNLLEISRTALSQPDCSSE 71

Query: 173 -AVDLASVTTFLLELLPSMKSPRRDIKESAALGDDDVVVSDQEIELALNKDVEKQICDAI 232
            AVDLASVTTFLLELLPSMKSPRRDIKESAALGDDDVVVSDQEIELALNKDVEKQICDAI
Sbjct: 72  LAVDLASVTTFLLELLPSMKSPRRDIKESAALGDDDVVVSDQEIELALNKDVEKQICDAI 131

Query: 233 DPRFLLQLANALFGQISRVSGPYDGPDDKE------------------------------ 263
           DPRFLLQLANALFGQISRVSGPYDGPDDKE                              
Sbjct: 132 DPRFLLQLANALFGQISRVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYR 191


HSP 2 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 267 RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
           RAAGNANEEALDRLPTSATCMNLLKLPPYR
Sbjct: 501 RAAGNANEEALDRLPTSATCMNLLKLPPYR 530

[Close]
BLAST of CsGy6G000010 vs. TrEMBL
Match: tr|A0A2I4HJP4|A0A2I4HJP4_9ROSI (E3 ubiquitin-protein ligase UPL6 isoform X2 OS=Juglans regia OX=51240 GN=LOC109018699 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.9e-57
Identity = 163/441 (36.96%), Postives = 185/441 (41.95%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQKCFRGRK
Sbjct: 1   MFFSGDPSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           A +A  F  RE F++TYGKHC+ V+RHCFGPDSEF  QLLFF+NA++  DF         
Sbjct: 61  AVKAEHFKAREHFYETYGKHCQNVNRHCFGPDSEFLRQLLFFFNAQNAGDFAILVETCRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LLQFVRDSDHATGNIAGLFAGKDYSSNRTLVDYRVKQLAYACIQAVHQNRNWLEEQVLMA 180

Query: 181 ------------------------------------------------------------ 226
                                                                       
Sbjct: 181 PEESSTSTSLLLETVVLLINPKLPWACNIVGYLLQRNTFTLFREIALTWKERTKTGNAIG 240


HSP 2 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAG A+EEALDRLPTSATCMNLLKLPPYR
Sbjct: 987  RAAGVASEEALDRLPTSATCMNLLKLPPYR 1016


HSP 3 Score: 52.4 bits (124), Expect = 2.2e-03
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 224 KEALWQLLWVSPTAPSNSAKHAASGHANKRHTVDFIQYRSS 265
           ++ALWQLLW +P  P+NS K AA+   NKRH  +FIQ R S
Sbjct: 551 RQALWQLLWTNPATPANSVKLAANTSTNKRHPEEFIQERVS 591

[Close]
BLAST of CsGy6G000010 vs. TrEMBL
Match: tr|A0A2I4HJY9|A0A2I4HJY9_9ROSI (E3 ubiquitin-protein ligase UPL6 isoform X3 OS=Juglans regia OX=51240 GN=LOC109018699 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.9e-57
Identity = 163/441 (36.96%), Postives = 185/441 (41.95%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQKCFRGRK
Sbjct: 1   MFFSGDPSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           A +A  F  RE F++TYGKHC+ V+RHCFGPDSEF  QLLFF+NA++  DF         
Sbjct: 61  AVKAEHFKAREHFYETYGKHCQNVNRHCFGPDSEFLRQLLFFFNAQNAGDFAILVETCRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LLQFVRDSDHATGNIAGLFAGKDYSSNRTLVDYRVKQLAYACIQAVHQNRNWLEEQVLMA 180

Query: 181 ------------------------------------------------------------ 226
                                                                       
Sbjct: 181 PEESSTSTSLLLETVVLLINPKLPWACNIVGYLLQRNTFTLFREIALTWKERTKTGNAIG 240


HSP 2 Score: 52.4 bits (124), Expect = 2.2e-03
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 224 KEALWQLLWVSPTAPSNSAKHAASGHANKRHTVDFIQYRSS 265
           ++ALWQLLW +P  P+NS K AA+   NKRH  +FIQ R S
Sbjct: 551 RQALWQLLWTNPATPANSVKLAANTSTNKRHPEEFIQERVS 591

[Close]
BLAST of CsGy6G000010 vs. TrEMBL
Match: tr|A0A2I4HJQ2|A0A2I4HJQ2_9ROSI (E3 ubiquitin-protein ligase UPL6 isoform X1 OS=Juglans regia OX=51240 GN=LOC109018699 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.9e-57
Identity = 163/441 (36.96%), Postives = 185/441 (41.95%), Query Frame = 0 

Query: 1   MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRK 60
           MFF+GD STRKRVDLGGRSSKERDRQKLLEQTRLERNRRL LRQQN AALKIQKCFRGRK
Sbjct: 1   MFFSGDPSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLWLRQQNSAALKIQKCFRGRK 60

Query: 61  ASEAARFSVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFM-------- 120
           A +A  F  RE F++TYGKHC+ V+RHCFGPDSEF  QLLFF+NA++  DF         
Sbjct: 61  AVKAEHFKAREHFYETYGKHCQNVNRHCFGPDSEFLRQLLFFFNAQNAGDFAILVETCRL 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 LLQFVRDSDHATGNIAGLFAGKDYSSNRTLVDYRVKQLAYACIQAVHQNRNWLEEQVLMA 180

Query: 181 ------------------------------------------------------------ 226
                                                                       
Sbjct: 181 PEESSTSTSLLLETVVLLINPKLPWACNIVGYLLQRNTFTLFREIALTWKERTKTGNAIG 240


HSP 2 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 267  RAAGNANEEALDRLPTSATCMNLLKLPPYR 297
            RAAG A+EEALDRLPTSATCMNLLKLPPYR
Sbjct: 1015 RAAGVASEEALDRLPTSATCMNLLKLPPYR 1044


HSP 3 Score: 52.4 bits (124), Expect = 2.2e-03
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 224 KEALWQLLWVSPTAPSNSAKHAASGHANKRHTVDFIQYRSS 265
           ++ALWQLLW +P  P+NS K AA+   NKRH  +FIQ R S
Sbjct: 551 RQALWQLLWTNPATPANSVKLAANTSTNKRHPEEFIQERVS 591

The following BLAST results are available for this feature:
BLAST of CsGy6G000010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656310.13.4e-10444.63PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis sativu... [more]
XP_008458320.11.5e-9943.32PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 [Cucumis melo][more]
XP_022958808.16.1e-9040.92E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita moschata][more]
XP_023547996.16.1e-9040.92E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023006490.14.0e-8940.58E3 ubiquitin-protein ligase UPL6 isoform X1 [Cucurbita maxima][more]
BLAST of CsGy6G000010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17205.11.5e-3429.61ubiquitin protein ligase 6[more]
BLAST of CsGy6G000010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8RWB8|UPL6_ARATH2.8e-3329.61E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV... [more]
BLAST of CsGy6G000010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C746|A0A1S3C746_CUCME9.6e-10043.32LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL6 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0K808|A0A0A0K808_CUCSA5.7e-6050.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000030 PE=4 SV=1[more]
tr|A0A2I4HJP4|A0A2I4HJP4_9ROSI5.9e-5736.96E3 ubiquitin-protein ligase UPL6 isoform X2 OS=Juglans regia OX=51240 GN=LOC1090... [more]
tr|A0A2I4HJY9|A0A2I4HJY9_9ROSI5.9e-5736.96E3 ubiquitin-protein ligase UPL6 isoform X3 OS=Juglans regia OX=51240 GN=LOC1090... [more]
tr|A0A2I4HJQ2|A0A2I4HJQ2_9ROSI5.9e-5736.96E3 ubiquitin-protein ligase UPL6 isoform X1 OS=Juglans regia OX=51240 GN=LOC1090... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR035983Hect_E3_ubiquitin_ligase
IPR000048IQ_motif_EF-hand-BS
IPR000569HECT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G000010.1CsGy6G000010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.2410.10coord: 220..309
e-value: 9.2E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 224..264
coord: 136..225
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 1..114
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 267..297
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 224..264
NoneNo IPR availablePANTHERPTHR11254HECT DOMAIN UBIQUITIN-PROTEIN LIGASEcoord: 1..114
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 136..225
NoneNo IPR availablePANTHERPTHR11254:SF413E3 UBIQUITIN-PROTEIN LIGASE UPL6coord: 267..297
IPR000569HECT domainPFAMPF00632HECTcoord: 275..297
e-value: 1.1E-4
score: 21.8
IPR000569HECT domainPROSITEPS50237HECTcoord: 222..295
score: 9.306
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 45..72
score: 6.723
IPR035983HECT, E3 ligase catalytic domainSUPERFAMILYSSF56204Hect, E3 ligase catalytic domaincoord: 272..296