MELO3C033980.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033980.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionB3 domain-containing protein At1g05920-like
Locationchr09 : 20015696 .. 20015908 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATAGATGATGTTGAAAAAAGAACGATATGTTTGAAGAAGTGGAAGATTGGGAGCGGGGATGTGTACTGTTTGATGACACATTGGAATTCATATGTGGAAGAACGGAGATTGAAAAGTGGAGATCATATTCAAATATGGAGCTTCAGAAAAGATGATGAAGCTGAGGGTGATCATCGACTCTGTTTTGCAATGGTAAAGCTAACCTAA

mRNA sequence

ATGATGATAGATGATGTTGAAAAAAGAACGATATGTTTGAAGAAGTGGAAGATTGGGAGCGGGGATGTGTACTGTTTGATGACACATTGGAATTCATATGTGGAAGAACGGAGATTGAAAAGTGGAGATCATATTCAAATATGGAGCTTCAGAAAAGATGATGAAGCTGAGGGTGATCATCGACTCTGTTTTGCAATGGTAAAGCTAACCTAA

Coding sequence (CDS)

ATGATGATAGATGATGTTGAAAAAAGAACGATATGTTTGAAGAAGTGGAAGATTGGGAGCGGGGATGTGTACTGTTTGATGACACATTGGAATTCATATGTGGAAGAACGGAGATTGAAAAGTGGAGATCATATTCAAATATGGAGCTTCAGAAAAGATGATGAAGCTGAGGGTGATCATCGACTCTGTTTTGCAATGGTAAAGCTAACCTAA

Protein sequence

MMIDDVEKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGDHRLCFAMVKLT
Homology
[Close]
BLAST of MELO3C033980.2 vs. NCBI nr
Match: KGN51473.1 (hypothetical protein Csa_5G563790 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG+VYCLMTHWNS VE+R LKSG+ IQ+WSFRKDDE E  
Sbjct: 33  MVLDDVLEERMVCLKKWKIGSGEVYCLMTHWNSMVEKRGLKSGEEIQVWSFRKDDEDEA- 92

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 93  HRLCLALVKL 101

[Close]
BLAST of MELO3C033980.2 vs. NCBI nr
Match: XP_004142863.2 (PREDICTED: B3 domain-containing protein At2g31420-like, partial [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 9.2e-23
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG+VYCLMTHWNS VE+R LKSG+ IQ+WSFRKDDE E  
Sbjct: 58  MVLDDVLEERMVCLKKWKIGSGEVYCLMTHWNSMVEKRGLKSGEEIQVWSFRKDDEDEA- 117

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 118 HRLCLALVKL 126

[Close]
BLAST of MELO3C033980.2 vs. NCBI nr
Match: XP_016903400.1 (PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           MM+DDV E+R +CLKKWKIGSG+VYCLMT WN  VEER  K G+ IQ+WSFRKDDE E  
Sbjct: 197 MMLDDVLEERMLCLKKWKIGSGEVYCLMTRWNLMVEERGFKGGEEIQVWSFRKDDEYEA- 256

Query: 61  HRLCFAMVKL 70
           HRLCFA+VKL
Sbjct: 257 HRLCFALVKL 265

[Close]
BLAST of MELO3C033980.2 vs. NCBI nr
Match: XP_011656245.1 (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus] >KGN51463.1 hypothetical protein Csa_5G550750 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG+VYCLMT WN  VEER LKSG+ IQ+WSFRKDDE E  
Sbjct: 64  MLLDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDDEDEA- 123

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 124 HRLCLALVKL 132

[Close]
BLAST of MELO3C033980.2 vs. NCBI nr
Match: XP_011655441.1 (PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus] >KGN51435.1 hypothetical protein Csa_5G544060 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 8.6e-21
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG VYCLMT WN  VEER LKSG+ IQ+WSFRKDDE E  
Sbjct: 194 MILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDDEDEA- 253

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 254 HRLCLALVKL 262

[Close]
BLAST of MELO3C033980.2 vs. TAIR10
Match: AT1G05920.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 46.2 bits (108), Expect = 9.6e-06
Identity = 30/77 (38.96%), Postives = 38/77 (49.35%), Query Frame = 0 

Query: 6   VEKRTICLKKWKIG---------SGDVY---CLMTHWNSYVEERRLKSGDHIQIWSFRKD 65
           V++RT   KKW +G         SG  Y    L   W++ VE   LK GD I +WSFR +
Sbjct: 239 VDQRT---KKWNMGFKQWFMTTDSGSSYWSFVLRGEWSNVVETNGLKEGDKISLWSFRSN 298

Query: 66  DEAEGDHRLCFAMVKLT 71
           D       LCFA+V  T
Sbjct: 299 D------ILCFALVPPT 306

[Close]
BLAST of MELO3C033980.2 vs. TAIR10
Match: AT1G05615.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 45.4 bits (106), Expect = 1.6e-05
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 13  LKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGDHRLCFAMVKLT 71
           L++W +G+  +Y L++   + V+  RLK G+ I+IWSF  DD+      L  AMV LT
Sbjct: 116 LRRWNMGTSPLYILVSGRYNVVKGCRLKEGNEIRIWSFHFDDQ------LNLAMVPLT 167

[Close]
BLAST of MELO3C033980.2 vs. Swiss-Prot
Match: sp|Q5RM09|Y1592_ARATH (B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05920 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 30/77 (38.96%), Postives = 38/77 (49.35%), Query Frame = 0 

Query: 6   VEKRTICLKKWKIG---------SGDVY---CLMTHWNSYVEERRLKSGDHIQIWSFRKD 65
           V++RT   KKW +G         SG  Y    L   W++ VE   LK GD I +WSFR +
Sbjct: 239 VDQRT---KKWNMGFKQWFMTTDSGSSYWSFVLRGEWSNVVETNGLKEGDKISLWSFRSN 298

Query: 66  DEAEGDHRLCFAMVKLT 71
           D       LCFA+V  T
Sbjct: 299 D------ILCFALVPPT 306

[Close]
BLAST of MELO3C033980.2 vs. Swiss-Prot
Match: sp|F4I8U3|Y1056_ARATH (Putative B3 domain-containing protein At1g05615 OS=Arabidopsis thaliana OX=3702 GN=At1g05615 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 13  LKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGDHRLCFAMVKLT 71
           L++W +G+  +Y L++   + V+  RLK G+ I+IWSF  DD+      L  AMV LT
Sbjct: 116 LRRWNMGTSPLYILVSGRYNVVKGCRLKEGNEIRIWSFHFDDQ------LNLAMVPLT 167

[Close]
BLAST of MELO3C033980.2 vs. TrEMBL
Match: tr|A0A0A0KPF2|A0A0A0KPF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G563790 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-23
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG+VYCLMTHWNS VE+R LKSG+ IQ+WSFRKDDE E  
Sbjct: 33  MVLDDVLEERMVCLKKWKIGSGEVYCLMTHWNSMVEKRGLKSGEEIQVWSFRKDDEDEA- 92

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 93  HRLCLALVKL 101

[Close]
BLAST of MELO3C033980.2 vs. TrEMBL
Match: tr|A0A1S4E600|A0A1S4E600_CUCME (putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC103504562 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.8e-22
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           MM+DDV E+R +CLKKWKIGSG+VYCLMT WN  VEER  K G+ IQ+WSFRKDDE E  
Sbjct: 197 MMLDDVLEERMLCLKKWKIGSGEVYCLMTRWNLMVEERGFKGGEEIQVWSFRKDDEYEA- 256

Query: 61  HRLCFAMVKL 70
           HRLCFA+VKL
Sbjct: 257 HRLCFALVKL 265

[Close]
BLAST of MELO3C033980.2 vs. TrEMBL
Match: tr|A0A0A0KPD7|A0A0A0KPD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550750 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG+VYCLMT WN  VEER LKSG+ IQ+WSFRKDDE E  
Sbjct: 64  MLLDDVLEERMLCLKKWKIGSGEVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDDEDEA- 123

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 124 HRLCLALVKL 132

[Close]
BLAST of MELO3C033980.2 vs. TrEMBL
Match: tr|A0A0A0KP87|A0A0A0KP87_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G544060 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.7e-21
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M++DDV E+R +CLKKWKIGSG VYCLMT WN  VEER LKSG+ IQ+WSFRKDDE E  
Sbjct: 194 MILDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDDEDEA- 253

Query: 61  HRLCFAMVKL 70
           HRLC A+VKL
Sbjct: 254 HRLCLALVKL 262

[Close]
BLAST of MELO3C033980.2 vs. TrEMBL
Match: tr|A0A0A0KUX9|A0A0A0KUX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-20
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 1   MMIDDV-EKRTICLKKWKIGSGDVYCLMTHWNSYVEERRLKSGDHIQIWSFRKDDEAEGD 60
           M +DDV E+R +CLKKWKIGSG VYCLMT WN  VEER LKSG+ IQ+WSFRKDDE E  
Sbjct: 178 MTLDDVLEERMLCLKKWKIGSGYVYCLMTKWNLMVEERGLKSGEEIQVWSFRKDDEDEA- 237

Query: 61  HRLCFAMVK 69
           HRLCFA+ K
Sbjct: 238 HRLCFALEK 245

The following BLAST results are available for this feature:
BLAST of MELO3C033980.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51473.19.2e-2374.29hypothetical protein Csa_5G563790 [Cucumis sativus][more]
XP_004142863.29.2e-2374.29PREDICTED: B3 domain-containing protein At2g31420-like, partial [Cucumis sativus... [more]
XP_016903400.11.0e-2172.86PREDICTED: putative B3 domain-containing protein At3g24850 [Cucumis melo][more]
XP_011656245.11.7e-2172.86PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus] >KGN514... [more]
XP_011655441.18.6e-2172.86PREDICTED: B3 domain-containing protein At2g31420-like [Cucumis sativus] >KGN514... [more]
BLAST of MELO3C033980.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05920.19.6e-0638.96Domain of unknown function (DUF313) [more]
AT1G05615.11.6e-0539.66Domain of unknown function (DUF313) [more]
BLAST of MELO3C033980.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5RM09|Y1592_ARATH1.7e-0438.96B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana OX=3702 GN=At1g05... [more]
sp|F4I8U3|Y1056_ARATH2.9e-0439.66Putative B3 domain-containing protein At1g05615 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of MELO3C033980.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPF2|A0A0A0KPF2_CUCSA6.1e-2374.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G563790 PE=4 SV=1[more]
tr|A0A1S4E600|A0A1S4E600_CUCME6.8e-2272.86putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0KPD7|A0A0A0KPD7_CUCSA1.2e-2172.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550750 PE=4 SV=1[more]
tr|A0A0A0KP87|A0A0A0KP87_CUCSA5.7e-2172.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G544060 PE=4 SV=1[more]
tr|A0A0A0KUX9|A0A0A0KUX9_CUCSA2.8e-2072.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033980.2.1MELO3C033980.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3DG3DSA:2.40.330.10coord: 1..68
e-value: 5.8E-7
score: 31.0
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILYSSF101936DNA-binding pseudobarrel domaincoord: 11..53
NoneNo IPR availablePANTHERPTHR31541FAMILY NOT NAMEDcoord: 5..69
NoneNo IPR availablePANTHERPTHR31541:SF22SUBFAMILY NOT NAMEDcoord: 5..69
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 1..70
score: 8.769

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C033980.2Csa5G563790Cucumber (Chinese Long) v2cumedB329
MELO3C033980.2CsGy5G018840Cucumber (Gy14) v2cgybmedB293
MELO3C033980.2CsaV3_5G028220Cucumber (Chinese Long) v3cucmedB342
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033980.2Wild cucumber (PI 183967)cpimedB331
MELO3C033980.2Wild cucumber (PI 183967)cpimedB348
MELO3C033980.2Cucumber (Chinese Long) v2cumedB343
MELO3C033980.2Bottle gourd (USVL1VR-Ls)lsimedB013
MELO3C033980.2Watermelon (Charleston Gray)medwcgB017
MELO3C033980.2Watermelon (97103) v1medwmB029
MELO3C033980.2Silver-seed gourdcarmedB0437
MELO3C033980.2Silver-seed gourdcarmedB0939
MELO3C033980.2Cucumber (Chinese Long) v3cucmedB356
MELO3C033980.2Watermelon (97103) v2medwmbB007
MELO3C033980.2Wax gourdmedwgoB011
MELO3C033980.2Cucumber (Gy14) v2cgybmedB306
MELO3C033980.2Cucumber (Gy14) v1cgymedB332
MELO3C033980.2Cucurbita maxima (Rimu)cmamedB293
MELO3C033980.2Cucurbita maxima (Rimu)cmamedB710
MELO3C033980.2Cucurbita moschata (Rifu)cmomedB279
MELO3C033980.2Cucurbita moschata (Rifu)cmomedB703
MELO3C033980.2Cucurbita pepo (Zucchini)cpemedB176
MELO3C033980.2Cucurbita pepo (Zucchini)cpemedB407