MELO3C031205.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031205.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr05 : 14940503 .. 14940945 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCCGACCACCACAAACCGATTAGGGATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAATCCCCTTTACCTTCTTTTAATCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCGACTTGCAAGAAGGATCAAGACATATGGCTACTCCTACAAATCAGCCACAAACATTCTCCGA

mRNA sequence

GTTCCGACCACCACAAACCGATTAGGGATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAATCCCCTTTACCTTCTTTTAATCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCGACTTGCAAGAAGGATCAAGACATATGGCTACTCCTACAAATCAGCCACAAACATTCTCCGA

Coding sequence (CDS)

ATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAA

Protein sequence

MMAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFELSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT

Homology

[Close]

BLAST of MELO3C031205.2 vs. NCBI nr
Match: KGN61303.1 (hypothetical protein Csa_2G078070 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 59/95 (62.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2  MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 61
          MAAKSNG VKDS+E AAAH+                          +P+YSHSPDSQPFE
Sbjct: 1  MAAKSNGVVKDSTEPAAAHM--------------------------EPIYSHSPDSQPFE 60

Query: 62 LSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT 97
          LSTDFPNLVE+NSS DTFPSHTP LTF NILLGPT
Sbjct: 61 LSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPT 69

[Close]

BLAST of MELO3C031205.2 vs. TrEMBL
Match: tr|A0A0A0LHM7|A0A0A0LHM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 59/95 (62.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2  MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 61
          MAAKSNG VKDS+E AAAH+                          +P+YSHSPDSQPFE
Sbjct: 1  MAAKSNGVVKDSTEPAAAHM--------------------------EPIYSHSPDSQPFE 60

Query: 62 LSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT 97
          LSTDFPNLVE+NSS DTFPSHTP LTF NILLGPT
Sbjct: 61 LSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPT 69

The following BLAST results are available for this feature:

BLAST of MELO3C031205.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61303.1	2.6e-20	62.11	hypothetical protein Csa_2G078070 [Cucumis sativus]	[more]

BLAST of MELO3C031205.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031205.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031205.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHM7\|A0A0A0LHM7_CUCSA	1.7e-20	62.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031205.2.1	MELO3C031205.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C031205.2	Csa2G078070	Cucumber (Chinese Long) v2	cumedB135
MELO3C031205.2	CSPI02G07590	Wild cucumber (PI 183967)	cpimedB135
MELO3C031205.2	CsGy2G007840	Cucumber (Gy14) v2	cgybmedB123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031205.2	Watermelon (97103) v2	medwmbB363
MELO3C031205.2	Wax gourd	medwgoB460
MELO3C031205.2	Cucumber (Gy14) v1	cgymedB316
MELO3C031205.2	Cucurbita maxima (Rimu)	cmamedB193
MELO3C031205.2	Cucurbita maxima (Rimu)	cmamedB833
MELO3C031205.2	Cucurbita moschata (Rifu)	cmomedB184
MELO3C031205.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C031205.2	Cucurbita pepo (Zucchini)	cpemedB131
MELO3C031205.2	Cucurbita pepo (Zucchini)	cpemedB916
MELO3C031205.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C031205.2	Watermelon (Charleston Gray)	medwcgB364
MELO3C031205.2	Watermelon (97103) v1	medwmB416
MELO3C031205.2	Silver-seed gourd	carmedB0173
MELO3C031205.2	Silver-seed gourd	carmedB0493
MELO3C031205.2	Cucumber (Chinese Long) v3	cucmedB137