MELO3C031205.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031205.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr05 : 14940503 .. 14940945 (-)
Sequence length	443

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCCGACCACCACAAACCGATTAGGGATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAATCCCCTTTACCTTCTTTTAATCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCGACTTGCAAGAAGGATCAAGACATATGGCTACTCCTACAAATCAGCCACAAACATTCTCCGA

mRNA sequence

GTTCCGACCACCACAAACCGATTAGGGATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAATCCCCTTTACCTTCTTTTAATCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCGACTTGCAAGAAGGATCAAGACATATGGCTACTCCTACAAATCAGCCACAAACATTCTCCGA

Coding sequence (CDS)

ATGATGGCGGCGAAATCTAATGGAGCGGTGAAGGATTCCTCCGAACTGGCGGCGGCACATATAAAATTTAATTCGGCAGTTACGAATTTAGGGCATCCCACACGACAAAAAAAGAAATCACCTACCGTTTCCTTATTAAACCAGCCGGTTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAGTAATTCTTCTCGTGACACATTTCCCTCCCATACACCCACATTGACCTTTCCTAATATCCTCTTAGGCCCCACATAA

Protein sequence

MMAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFELSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT

Homology

[Close]

BLAST of MELO3C031205.2.1 vs. NCBI nr
Match: KGN61303.1 (hypothetical protein Csa_2G078070 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 59/95 (62.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2  MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 61
          MAAKSNG VKDS+E AAAH+                          +P+YSHSPDSQPFE
Sbjct: 1  MAAKSNGVVKDSTEPAAAHM--------------------------EPIYSHSPDSQPFE 60

Query: 62 LSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT 97
          LSTDFPNLVE+NSS DTFPSHTP LTF NILLGPT
Sbjct: 61 LSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPT 69

[Close]

BLAST of MELO3C031205.2.1 vs. TrEMBL
Match: tr|A0A0A0LHM7|A0A0A0LHM7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 59/95 (62.11%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2  MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 61
          MAAKSNG VKDS+E AAAH+                          +P+YSHSPDSQPFE
Sbjct: 1  MAAKSNGVVKDSTEPAAAHM--------------------------EPIYSHSPDSQPFE 60

Query: 62 LSTDFPNLVESNSSRDTFPSHTPTLTFPNILLGPT 97
          LSTDFPNLVE+NSS DTFPSHTP LTF NILLGPT
Sbjct: 61 LSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPT 69

The following BLAST results are available for this feature:

BLAST of MELO3C031205.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61303.1	2.6e-20	62.11	hypothetical protein Csa_2G078070 [Cucumis sativus]	[more]

BLAST of MELO3C031205.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031205.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031205.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHM7\|A0A0A0LHM7_CUCSA	1.7e-20	62.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C031205.2	MELO3C031205.2	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031205.2.1.five_prime_UTR.1	MELO3C031205.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031205.2.1.CDS.1	MELO3C031205.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031205.2.1.exon.1	MELO3C031205.2.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C031205.2.1.three_prime_UTR.1	MELO3C031205.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C031205.2.1	MELO3C031205.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..90