Csa2G078070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G078070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 6421673 .. 6422541 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAAATCTAATGGGGTGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAAGTTAATTCGACAGTTATGAATTTAGGGCATCCACATGAAAAAAAGGAAAGTCATCTACTGTTTCCTTACTAAACCAGCCAATTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACAAAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTTTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTTGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTCCAATACAACAATCTATCCCTTTGACAAAACCATCACCTGGTGACATTCCATCTTCATCTACAGCCAACCCAATCAGCCTTCGTGATATGGCTTTTATTTTATTGCAACACGGTTTATGTGTCATGGCTGTCCCTTCTCTTCCCCTAAAAAAGGCTAAGAAGCCTTGCACTGACAACAACAAACGAAATAAACTTCAAAGGAAATTACAAACTCTTCAATCATCAATTTGTTATGATAAAACATCATCTTTAGACAATAGGAAGGGTTCCGAGGCTATCCAATCAGGATCTTCTCTTGGAATGATTGTGACTTGA

mRNA sequence

ATGGCGGCGAAATCTAATGGGGTGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAACCAATTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACAAAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTTTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTTGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTCCAATACAACAATCTATCCCTTTGACAAAACCATCACCTGGTGACATTCCATCTTCATCTACAGCCAACCCAATCAGCCTTCGTGATATGGCTTTTATTTTATTGCAACACGGTTTATGTGTCATGGCTGTCCCTTCTCTTCCCCTAAAAAAGGCTAAGAAGCCTTGCACTGACAACAACAAACGAAATAAACTTCAAAGGAAATTACAAACTCTTCAATCATCAATTTGTTATGATAAAACATCATCTTTAGACAATAGGAAGGGTTCCGAGGCTATCCAATCAGGATCTTCTCTTGGAATGATTGTGACTTGA

Coding sequence (CDS)

ATGGCGGCGAAATCTAATGGGGTGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAACCAATTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACAAAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTTTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTTGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTCCAATACAACAATCTATCCCTTTGACAAAACCATCACCTGGTGACATTCCATCTTCATCTACAGCCAACCCAATCAGCCTTCGTGATATGGCTTTTATTTTATTGCAACACGGTTTATGTGTCATGGCTGTCCCTTCTCTTCCCCTAAAAAAGGCTAAGAAGCCTTGCACTGACAACAACAAACGAAATAAACTTCAAAGGAAATTACAAACTCTTCAATCATCAATTTGTTATGATAAAACATCATCTTTAGACAATAGGAAGGGTTCCGAGGCTATCCAATCAGGATCTTCTCTTGGAATGATTGTGACTTGA

Protein sequence

MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSPSLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSSTANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKTSSLDNRKGSEAIQSGSSLGMIVT*
Homology
[Close]
BLAST of Csa2G078070 vs. TrEMBL
Match: A0A0A0LHM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 6.6e-149
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1 

Query: 1   MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT 60
           MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT
Sbjct: 1   MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT 60

Query: 61  FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120
           FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP
Sbjct: 61  FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120

Query: 121 SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST 180
           SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST
Sbjct: 121 SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST 180

Query: 181 ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT 240
           ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT
Sbjct: 181 ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT 240

Query: 241 SSLDNRKGSEAIQSGSSLGMIVT 264
           SSLDNRKGSEAIQSGSSLGMIVT
Sbjct: 241 SSLDNRKGSEAIQSGSSLGMIVT 263

[Close]
BLAST of Csa2G078070 vs. TrEMBL
Match: A0A0A0KPT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 2   AAKSNGVVKDSTEPAAAHM--EPIYSH--SPDSQPFELSTDFPNLVENNSSHDTFPSHTP 61
           AA ++ VV++ST PAAA M  +   +H  S DS+ FE S +FPN V  N   +  PSH+P
Sbjct: 188 AADTHAVVRESTLPAAASMGIKSALTHQKSRDSRQFEFSANFPNPVAINIPCEQIPSHSP 247

Query: 62  ALTFHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYL 121
           AL + N L+GPTKS SPSFNQPS+AMVTFQ   SNLREG KH+ATP+NQ QTFSD EA L
Sbjct: 248 ALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSNLREGTKHVATPENQLQTFSDSEADL 307

Query: 122 TSPSLKKTTLSLIRWKKLFWGK--SQRIKSPTYYPTLVPTDLHSPI 162
           T+ S  K   +   W+   +G+  ++   S T  P  VPTDLH+PI
Sbjct: 308 TALS-PKDDFATHSWEDAVFGENPTESNLSITILPP-VPTDLHNPI 351

[Close]
BLAST of Csa2G078070 vs. TrEMBL
Match: A0A0A0LW63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 1 

Query: 100 MATPKNQPQTFSDLEAYLTSPSLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHS 159
           MAT  N P T + L A +T         S+++ K +   +S + + P      +  DL  
Sbjct: 1   MATMLNLP-TSTTLTAPITQTINPPIYKSIVQTKPVH--QSHQSQLPLAILPPISEDLTH 60

Query: 160 PI------QQSIPLTKPSPGDIPSSSTANPISLRDMAFILLQHGLCVMAVPSLPLKKAKK 219
           PI      QQS+    P+P +  ++ST   I L D+A +L QHGLC  A P   L+K  K
Sbjct: 61  PIHTSSEHQQSL---HPNPNN-QTASTQPIIPLPDLASLLAQHGLCTWAFPLFLLQKLLK 120

Query: 220 PCTDNNKRNKLQRKLQTLQSSICYDKT 241
             +   KRNK+QR+LQ L SSI YDK+
Sbjct: 121 DLSTTIKRNKMQRELQNLHSSIHYDKS 140

[Close]
BLAST of Csa2G078070 vs. NCBI nr
Match: gi|700206184|gb|KGN61303.1| (hypothetical protein Csa_2G078070 [Cucumis sativus])

HSP 1 Score: 534.6 bits (1376), Expect = 9.5e-149
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1 

Query: 1   MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT 60
           MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT
Sbjct: 1   MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT 60

Query: 61  FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120
           FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP
Sbjct: 61  FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120

Query: 121 SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST 180
           SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST
Sbjct: 121 SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQSIPLTKPSPGDIPSSST 180

Query: 181 ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT 240
           ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT
Sbjct: 181 ANPISLRDMAFILLQHGLCVMAVPSLPLKKAKKPCTDNNKRNKLQRKLQTLQSSICYDKT 240

Query: 241 SSLDNRKGSEAIQSGSSLGMIVT 264
           SSLDNRKGSEAIQSGSSLGMIVT
Sbjct: 241 SSLDNRKGSEAIQSGSSLGMIVT 263

[Close]
BLAST of Csa2G078070 vs. NCBI nr
Match: gi|700195712|gb|KGN50889.1| (hypothetical protein Csa_5G314850 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 2   AAKSNGVVKDSTEPAAAHM--EPIYSH--SPDSQPFELSTDFPNLVENNSSHDTFPSHTP 61
           AA ++ VV++ST PAAA M  +   +H  S DS+ FE S +FPN V  N   +  PSH+P
Sbjct: 188 AADTHAVVRESTLPAAASMGIKSALTHQKSRDSRQFEFSANFPNPVAINIPCEQIPSHSP 247

Query: 62  ALTFHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYL 121
           AL + N L+GPTKS SPSFNQPS+AMVTFQ   SNLREG KH+ATP+NQ QTFSD EA L
Sbjct: 248 ALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSNLREGTKHVATPENQLQTFSDSEADL 307

Query: 122 TSPSLKKTTLSLIRWKKLFWGK--SQRIKSPTYYPTLVPTDLHSPI 162
           T+ S  K   +   W+   +G+  ++   S T  P  VPTDLH+PI
Sbjct: 308 TALS-PKDDFATHSWEDAVFGENPTESNLSITILPP-VPTDLHNPI 351

[Close]
BLAST of Csa2G078070 vs. NCBI nr
Match: gi|700209946|gb|KGN65042.1| (hypothetical protein Csa_1G181550 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 1 

Query: 100 MATPKNQPQTFSDLEAYLTSPSLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHS 159
           MAT  N P T + L A +T         S+++ K +   +S + + P      +  DL  
Sbjct: 1   MATMLNLP-TSTTLTAPITQTINPPIYKSIVQTKPVH--QSHQSQLPLAILPPISEDLTH 60

Query: 160 PI------QQSIPLTKPSPGDIPSSSTANPISLRDMAFILLQHGLCVMAVPSLPLKKAKK 219
           PI      QQS+    P+P +  ++ST   I L D+A +L QHGLC  A P   L+K  K
Sbjct: 61  PIHTSSEHQQSL---HPNPNN-QTASTQPIIPLPDLASLLAQHGLCTWAFPLFLLQKLLK 120

Query: 220 PCTDNNKRNKLQRKLQTLQSSICYDKT 241
             +   KRNK+QR+LQ L SSI YDK+
Sbjct: 121 DLSTTIKRNKMQRELQNLHSSIHYDKS 140

The following BLAST results are available for this feature:
BLAST of Csa2G078070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHM7_CUCSA6.6e-149100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078070 PE=4 SV=1[more]
A0A0A0KPT1_CUCSA1.2e-3052.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1[more]
A0A0A0LW63_CUCSA1.5e-0736.73Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181550 PE=4 SV=1[more]
BLAST of Csa2G078070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206184|gb|KGN61303.1|9.5e-149100.00hypothetical protein Csa_2G078070 [Cucumis sativus][more]
gi|700195712|gb|KGN50889.1|1.8e-3052.41hypothetical protein Csa_5G314850 [Cucumis sativus][more]
gi|700209946|gb|KGN65042.1|2.1e-0736.73hypothetical protein Csa_1G181550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU136427cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G078070.1Csa2G078070.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU136427CU136427transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G078070MELO3C031205.2Melon (DHL92) v3.6.1cumedB135
Csa2G078070CSPI02G07590Wild cucumber (PI 183967)cpicuB065
Csa2G078070CsGy2G007840Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G078070Melon (DHL92) v3.6.1cumedB129
Csa2G078070Silver-seed gourdcarcuB0514
Csa2G078070Watermelon (97103) v2cuwmbB109
Csa2G078070Wax gourdcuwgoB139
Csa2G078070Cucumber (Gy14) v1cgycuB274
Csa2G078070Cucurbita maxima (Rimu)cmacuB165
Csa2G078070Cucurbita maxima (Rimu)cmacuB786
Csa2G078070Cucurbita moschata (Rifu)cmocuB150
Csa2G078070Cucurbita moschata (Rifu)cmocuB779
Csa2G078070Melon (DHL92) v3.5.1cumeB137
Csa2G078070Watermelon (Charleston Gray)cuwcgB103
Csa2G078070Watermelon (97103) v1cuwmB156
Csa2G078070Cucurbita pepo (Zucchini)cpecuB098
Csa2G078070Cucurbita pepo (Zucchini)cpecuB811
Csa2G078070Bottle gourd (USVL1VR-Ls)culsiB098