MELO3C029307.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029307.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDefensin-like family protein, putative
Locationchr02 : 1132324 .. 1132958 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCCGACGAATGAATGGTCGTTGGGGAAACCCTTCGACAAGCATTTTCCCGATAGTACAAGGGAAGCCGTCGGGAGATACTAAAAACTCCCGGCGGTACGTGGGGAATACAAATTCCCAACGCCTTATACAAGTGCGCAAGAATATGTCAACCGTTGGGCGTTACTTCCACCAAACGAACTATGGGACGACTAATCTCCCAACGACTTATTTACCGTCAAGAGATATTTATTCAAATATGTATATATCCTTTTTTATTTCATTCTATTAAAATTATGCGGTACTATATATATATTATTATGATGATTACAGGAAGTTTAAATGCAAATGCTGCTCAAATGTGCTGCAACAATCATCCAAGTTTAGGGAGGTGTAAGCCTGGAGTAGATGACAGTCCAGGAGGCAATGGAAAGTGTTGGAGTTTCTGCATTTCTGGATGTACTAAGGGAGGATTTTGCAAGCATGTTGGAAGAAATGGCCATGTCTGCCATTGCTATTGTTGATTAACTTCACCAATAATTACCCTCTTATCATAATATGCAATTTCCATATGCATTTCTCTTTCAACAATGTTCTCTTGATCGGTTCTAGAAAATATATATCTAATATATGAAAGAAATGTAACGTTAT

mRNA sequence

ATGAAGTCCCGACGAATGAATGGTCGTTGGGGAAACCCTTCGACAAGCATTTTCCCGATAGTACAAGGGAAGCCGTCGGGAGATACTAAAAACTCCCGGCGGTACGTGGGGAATACAAATTCCCAACGCCTTATACAAGTGCGCAAGAATATGTCAACCGTTGGGCGAAGTTTAAATGCAAATGCTGCTCAAATGTGCTGCAACAATCATCCAAGTTTAGGGAGGTGTAAGCCTGGAGTAGATGACAGTCCAGGAGGCAATGGAAAGTGTTGGAGTTTCTGCATTTCTGGATGTACTAAGGGAGGATTTTGCAAGCATGTTGGAAGAAATGGCCATGTCTGCCATTGCTATTGTTGATTAACTTCACCAATAATTACCCTCTTATCATAATATGCAATTTCCATATGCATTTCTCTTTCAACAATGTTCTCTTGATCGGTTCTAGAAAATATATATCTAATATATGAAAGAAATGTAACGTTAT

Coding sequence (CDS)

ATGAAGTCCCGACGAATGAATGGTCGTTGGGGAAACCCTTCGACAAGCATTTTCCCGATAGTACAAGGGAAGCCGTCGGGAGATACTAAAAACTCCCGGCGGTACGTGGGGAATACAAATTCCCAACGCCTTATACAAGTGCGCAAGAATATGTCAACCGTTGGGCGAAGTTTAAATGCAAATGCTGCTCAAATGTGCTGCAACAATCATCCAAGTTTAGGGAGGTGTAAGCCTGGAGTAGATGACAGTCCAGGAGGCAATGGAAAGTGTTGGAGTTTCTGCATTTCTGGATGTACTAAGGGAGGATTTTGCAAGCATGTTGGAAGAAATGGCCATGTCTGCCATTGCTATTGTTGA

Protein sequence

MKSRRMNGRWGNPSTSIFPIVQGKPSGDTKNSRRYVGNTNSQRLIQVRKNMSTVGRSLNANAAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC
Homology
[Close]
BLAST of MELO3C029307.2 vs. NCBI nr
Match: KGN66135.1 (hypothetical protein Csa_1G573050 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 3.5e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 57  SLNANAAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNG-HVCH 116
           +LNANAA +CCNN+PSLG CKPGVDDSP  NGKCW  C SGCTKGGFCK VGRNG HVCH
Sbjct: 6   NLNANAA-VCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCH 65

Query: 117 CYC 119
           CYC
Sbjct: 66  CYC 67

[Close]
BLAST of MELO3C029307.2 vs. NCBI nr
Match: KGN66137.1 (hypothetical protein Csa_1G573070 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 3.5e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 57  SLNANAAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNG-HVCH 116
           +LNANAA +CCNN+PSLG CKPGVDDSP  NGKCW  C SGCTKGGFCK VGRNG HVCH
Sbjct: 21  NLNANAA-VCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCH 80

Query: 117 CYC 119
           CYC
Sbjct: 81  CYC 82

[Close]
BLAST of MELO3C029307.2 vs. NCBI nr
Match: OMO68055.1 (putative defensin-like protein 20 [Corchorus olitorius])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 66  CCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           CCNNHPSLGRC PG+DD+P  NGKCW+FCISGC KGGFCK +    H CHCYC
Sbjct: 33  CCNNHPSLGRCLPGIDDNPSSNGKCWAFCISGCVKGGFCKRMKDGHHECHCYC 85

[Close]
BLAST of MELO3C029307.2 vs. NCBI nr
Match: XP_022759828.1 (defensin-like protein 21 [Durio zibethinus])

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 66  CCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           CC NHPSLG C PG DD P  NGKCW+FCI+ C KGGFCK V    HVCHCYC
Sbjct: 30  CCQNHPSLGGCIPGKDDDPESNGKCWAFCITDCVKGGFCKQVSAGHHVCHCYC 82

[Close]
BLAST of MELO3C029307.2 vs. NCBI nr
Match: XP_006285438.1 (defensin-like protein 21 [Capsella rubella] >EOA18336.1 hypothetical protein CARUB_v10006855mg [Capsella rubella])

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPSLGRC PG+DD+P  +GKCW FC+ GC +GGFCK  GR  H+CHCYC
Sbjct: 41  ICCREHPSLGRCLPGIDDNPDKDGKCWKFCVEGCERGGFCKRFGRK-HICHCYC 93

[Close]
BLAST of MELO3C029307.2 vs. TAIR10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPS+GRC P +DDS    GKCW FCI GC  GGFCK  G   H+CHC C
Sbjct: 40  ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFGHK-HICHCNC 92

[Close]
BLAST of MELO3C029307.2 vs. TAIR10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPS+GRC PG+DD    +GKCW FCI GC  GGFCK +  + H+CHC C
Sbjct: 36  ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCK-LFEHKHICHCNC 88

[Close]
BLAST of MELO3C029307.2 vs. TAIR10
Match: AT4G18823.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 23/54 (42.59%), Postives = 29/54 (53.70%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CCN+HP  G C          N  C  +C+ GCT+GGFCK       +CHCYC
Sbjct: 35  LCCNDHPEFGICT---------NKSCNKWCLQGCTRGGFCKR-----KICHCYC 74

[Close]
BLAST of MELO3C029307.2 vs. TAIR10
Match: AT5G39645.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 40.4 bits (93), Expect = 8.8e-04
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 0 

Query: 65 MCCNNHPSLGRCKPGVDDSP 85
          +CC  HPSLGRC PG+DD P
Sbjct: 40 ICCREHPSLGRCLPGIDDRP 59

[Close]
BLAST of MELO3C029307.2 vs. Swiss-Prot
Match: sp|P0CAX9|DEF21_ARATH (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPS+GRC P +DDS    GKCW FCI GC  GGFCK  G   H+CHC C
Sbjct: 40  ICCKEHPSVGRCLPNIDDSAEKGGKCWKFCIEGCETGGFCKLFGHK-HICHCNC 92

[Close]
BLAST of MELO3C029307.2 vs. Swiss-Prot
Match: sp|Q2V2S1|DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-14
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPS+GRC PG+DD    +GKCW FCI GC  GGFCK +  + H+CHC C
Sbjct: 36  ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCK-LFEHKHICHCNC 88

[Close]
BLAST of MELO3C029307.2 vs. Swiss-Prot
Match: sp|Q2L6T3|DEF27_ARATH (Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 23/54 (42.59%), Postives = 29/54 (53.70%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CCN+HP  G C          N  C  +C+ GCT+GGFCK       +CHCYC
Sbjct: 35  LCCNDHPEFGICT---------NKSCNKWCLQGCTRGGFCKR-----KICHCYC 74

[Close]
BLAST of MELO3C029307.2 vs. TrEMBL
Match: tr|A0A0A0LZ58|A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 57  SLNANAAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNG-HVCH 116
           +LNANAA +CCNN+PSLG CKPGVDDSP  NGKCW  C SGCTKGGFCK VGRNG HVCH
Sbjct: 21  NLNANAA-VCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCH 80

Query: 117 CYC 119
           CYC
Sbjct: 81  CYC 82

[Close]
BLAST of MELO3C029307.2 vs. TrEMBL
Match: tr|A0A0A0LW61|A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 57  SLNANAAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNG-HVCH 116
           +LNANAA +CCNN+PSLG CKPGVDDSP  NGKCW  C SGCTKGGFCK VGRNG HVCH
Sbjct: 6   NLNANAA-VCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCH 65

Query: 117 CYC 119
           CYC
Sbjct: 66  CYC 67

[Close]
BLAST of MELO3C029307.2 vs. TrEMBL
Match: tr|A0A1R3HCK7|A0A1R3HCK7_9ROSI (Putative defensin-like protein 20 OS=Corchorus olitorius OX=93759 GN=COLO4_29927 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.0e-19
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 66  CCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           CCNNHPSLGRC PG+DD+P  NGKCW+FCISGC KGGFCK +    H CHCYC
Sbjct: 33  CCNNHPSLGRCLPGIDDNPSSNGKCWAFCISGCVKGGFCKRMKDGHHECHCYC 85

[Close]
BLAST of MELO3C029307.2 vs. TrEMBL
Match: tr|R0F9I9|R0F9I9_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10006855mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 65  MCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           +CC  HPSLGRC PG+DD+P  +GKCW FC+ GC +GGFCK  GR  H+CHCYC
Sbjct: 41  ICCREHPSLGRCLPGIDDNPDKDGKCWKFCVEGCERGGFCKRFGRK-HICHCYC 93

[Close]
BLAST of MELO3C029307.2 vs. TrEMBL
Match: tr|A0A061DMQ3|A0A061DMQ3_THECC (Defensin-like family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_002567 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 62  AAQMCCNNHPSLGRCKPGVDDSPGGNGKCWSFCISGCTKGGFCKHVGRNGHVCHCYC 119
           A   CCNNHP LGRC PG DD P   GKCW++C SGC KGGFCK +    H CHCYC
Sbjct: 29  AQARCCNNHPDLGRCLPGQDDDPQKGGKCWNYCSSGCQKGGFCKRMKDGHHECHCYC 85

The following BLAST results are available for this feature:
BLAST of MELO3C029307.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66135.13.5e-2280.95hypothetical protein Csa_1G573050 [Cucumis sativus][more]
KGN66137.13.5e-2280.95hypothetical protein Csa_1G573070 [Cucumis sativus][more]
OMO68055.11.4e-1873.58putative defensin-like protein 20 [Corchorus olitorius][more]
XP_022759828.12.8e-1669.81defensin-like protein 21 [Durio zibethinus][more]
XP_006285438.13.7e-1664.81defensin-like protein 21 [Capsella rubella] >EOA18336.1 hypothetical protein CAR... [more]
BLAST of MELO3C029307.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14276.17.7e-1659.26Defensin-like (DEFL) family protein[more]
AT5G52605.11.3e-1557.41Defensin-like (DEFL) family protein[more]
AT4G18823.11.3e-0742.59Defensin-like (DEFL) family protein[more]
AT5G39645.18.8e-0470.00Defensin-like (DEFL) family protein[more]
BLAST of MELO3C029307.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0CAX9|DEF21_ARATH1.4e-1459.26Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1[more]
sp|Q2V2S1|DEF20_ARATH2.4e-1457.41Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 P... [more]
sp|Q2L6T3|DEF27_ARATH2.4e-0642.59Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 P... [more]
BLAST of MELO3C029307.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LZ58|A0A0A0LZ58_CUCSA2.3e-2280.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1[more]
tr|A0A0A0LW61|A0A0A0LW61_CUCSA2.3e-2280.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573050 PE=4 SV=1[more]
tr|A0A1R3HCK7|A0A1R3HCK7_9ROSI9.0e-1973.58Putative defensin-like protein 20 OS=Corchorus olitorius OX=93759 GN=COLO4_29927... [more]
tr|R0F9I9|R0F9I9_9BRAS2.5e-1664.81Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10006855mg PE=4 S... [more]
tr|A0A061DMQ3|A0A061DMQ3_THECC2.1e-1563.16Defensin-like family protein, putative OS=Theobroma cacao OX=3641 GN=TCM_002567 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0050832defense response to fungus
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: INTERPRO
TermDefinition
IPR022618Defensin-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029307.2.1MELO3C029307.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022618Defensin-like proteinPFAMPF10868Defensin_likecoord: 65..118
e-value: 9.3E-15
score: 55.0
IPR022618Defensin-like proteinPANTHERPTHR34453FAMILY NOT NAMEDcoord: 59..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C029307.2Csa1G573030Cucumber (Chinese Long) v2cumedB033
MELO3C029307.2CSPI01G27130Wild cucumber (PI 183967)cpimedB036
MELO3C029307.2Cucsa.289210Cucumber (Gy14) v1cgymedB480
MELO3C029307.2CsGy1G026310Cucumber (Gy14) v2cgybmedB032
MELO3C029307.2ClCG03G016530Watermelon (Charleston Gray)medwcgB237
MELO3C029307.2Cla97C03G066830Watermelon (97103) v2medwmbB235
MELO3C029307.2CsaV3_1G039450Cucumber (Chinese Long) v3cucmedB039
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029307.2Silver-seed gourdcarmedB0774
MELO3C029307.2Wax gourdmedwgoB312
MELO3C029307.2Cucurbita maxima (Rimu)cmamedB073
MELO3C029307.2Cucurbita moschata (Rifu)cmomedB066
MELO3C029307.2Cucurbita moschata (Rifu)cmomedB069
MELO3C029307.2Cucurbita pepo (Zucchini)cpemedB106
MELO3C029307.2Cucurbita pepo (Zucchini)cpemedB391
MELO3C029307.2Bottle gourd (USVL1VR-Ls)lsimedB114
MELO3C029307.2Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C029307.2Watermelon (Charleston Gray)medwcgB229
MELO3C029307.2Watermelon (97103) v1medwmB262
MELO3C029307.2Watermelon (97103) v1medwmB276