CsGy1G026310 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G026310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	defensin-like protein 21
Location	Chr1 : 24953526 .. 24953876 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGTTTAACTTAATTCTCTCTTCTCAATGTATTAACCTTCAAATTACTGTTTTTTTTGGTTCAAAGGTAAACTTAATCATCTTTATATCATCGTGTCTAACAACGATAGAGTACGTGTACAATTGGAATTGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACAT

mRNA sequence

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACAT

Coding sequence (CDS)

ATGGCAAAGTTAGGAGCAATCTTCAGTTGGGTCTTTGTTGCCTTCCTTGTTCTATATGCAGGGAGTATGAATACAAATGCACAGTTGTGCTGCAACAATCATCGTGAGTTGGGATCATGCGTGCCAGGAGTAGACGATGATTATGATGGGAAGTGTTGGCATCATTGCATTGTTGGTTGTGAGAGAGGTGGATTTTGTAAAAAACTTTGGTATGGACAT

Protein sequence

MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGH

Homology

[Close]

BLAST of CsGy1G026310 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_1G573030 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 3.3e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 ERGGFCKKLWYGH 74
          ERGGFCKKLWYGH
Sbjct: 61 ERGGFCKKLWYGH 73

[Close]

BLAST of CsGy1G026310 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_1G573060 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGA F  VF+AFLVLY+GSMNTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 ERGGFCKKL 70
          E+GGFCK L
Sbjct: 61 EKGGFCKHL 69

[Close]

BLAST of CsGy1G026310 vs. NCBI nr
Match: KGN66134.1 (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 ERGGFCKKLWYGH 74
          E+GG CK++   H
Sbjct: 61 EKGGICKRVGKKH 73

[Close]

BLAST of CsGy1G026310 vs. NCBI nr
Match: KGN66137.1 (hypothetical protein Csa_1G573070 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDD--DYDGKCWHHCIV 60
          MAK+G I S V V FLV Y+G++N NA +CCNN+  LGSC PGVDD    +GKCW  C  
Sbjct: 1  MAKVGLI-SCVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCERGGFCKKL 70
          GC +GGFCK++
Sbjct: 61 GCTKGGFCKRV 70

[Close]

BLAST of CsGy1G026310 vs. NCBI nr
Match: KJB28843.1 (hypothetical protein B456_005G072200, partial [Gossypium raimondii])

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 30 CCNNHRELGSCVPGVDD--DYDGKCWHHCIVGCERGGFCKKLWYGH 74
          CCNNH ELG CVPG DD  D DGKCW++CIV CERGG CK +  GH
Sbjct: 16 CCNNHPELGKCVPGEDDNPDKDGKCWNYCIVDCERGGVCKLMSDGH 61

[Close]

BLAST of CsGy1G026310 vs. TAIR10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-12
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 29 LCCNNHRELGSCVPGVDDD--YDGKCWHHCIVGCERGGFCKKLWYGH 74
          +CC  H  +G C+PG+DDD   DGKCW  CI GCE GGFCK   + H
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKH 82

[Close]

BLAST of CsGy1G026310 vs. TAIR10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 7  IFSWVFVAFLVLYAGSMNTNAQ------------LCCNNHRELGSCVPGVDDDYD--GKC 66
          + S+V  A +VL  GS+  + Q            +CC  H  +G C+P +DD  +  GKC
Sbjct: 6  VVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKGGKC 65

Query: 67 WHHCIVGCERGGFCKKLWYGH 74
          W  CI GCE GGFCK   + H
Sbjct: 66 WKFCIEGCETGGFCKLFGHKH 86

[Close]

BLAST of CsGy1G026310 vs. TAIR10
Match: AT4G18823.1 (Defensin-like (DEFL) family protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.2e-05
Identity = 26/69 (37.68%), Postives = 31/69 (44.93%), Query Frame = 0


Query: 10 WVFVAFLVLYA----------GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 69
          +VF AFL L             S N    LCCN+H E G C        +  C   C+ G
Sbjct: 6  FVFFAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGICT-------NKSCNKWCLQG 65

[Close]

BLAST of CsGy1G026310 vs. Swiss-Prot
Match: sp|Q2V2S1|DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-11
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 29 LCCNNHRELGSCVPGVDDD--YDGKCWHHCIVGCERGGFCKKLWYGH 74
          +CC  H  +G C+PG+DDD   DGKCW  CI GCE GGFCK   + H
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKH 82

[Close]

BLAST of CsGy1G026310 vs. Swiss-Prot
Match: sp|P0CAX9|DEF21_ARATH (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-10
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 7  IFSWVFVAFLVLYAGSMNTNAQ------------LCCNNHRELGSCVPGVDDDYD--GKC 66
          + S+V  A +VL  GS+  + Q            +CC  H  +G C+P +DD  +  GKC
Sbjct: 6  VVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKGGKC 65

Query: 67 WHHCIVGCERGGFCKKLWYGH 74
          W  CI GCE GGFCK   + H
Sbjct: 66 WKFCIEGCETGGFCKLFGHKH 86

[Close]

BLAST of CsGy1G026310 vs. Swiss-Prot
Match: sp|Q2L6T3|DEF27_ARATH (Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-04
Identity = 26/69 (37.68%), Postives = 31/69 (44.93%), Query Frame = 0


Query: 10 WVFVAFLVLYA----------GSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 69
          +VF AFL L             S N    LCCN+H E G C        +  C   C+ G
Sbjct: 6  FVFFAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGICT-------NKSCNKWCLQG 65

[Close]

BLAST of CsGy1G026310 vs. TrEMBL
Match: tr|A0A0A0LWJ9|A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-39
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60

Query: 61 ERGGFCKKLWYGH 74
          ERGGFCKKLWYGH
Sbjct: 61 ERGGFCKKLWYGH 73

[Close]

BLAST of CsGy1G026310 vs. TrEMBL
Match: tr|A0A0A0M1N0|A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAKLGA F  VF+AFLVLY+GSMNTNAQLCCNNH ELG C  GVDD  DGKCW HCI GC
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGC 60

Query: 61 ERGGFCKKL 70
          E+GGFCK L
Sbjct: 61 EKGGFCKHL 69

[Close]

BLAST of CsGy1G026310 vs. TrEMBL
Match: tr|A0A0A0LYL5|A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-19
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGC 60
          MAK+G I   VF+ FL  Y+GS+NTNAQLCC NH E G+C PGVDD  DG+CW  CI GC
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGC 60

Query: 61 ERGGFCKKLWYGH 74
          E+GG CK++   H
Sbjct: 61 EKGGICKRVGKKH 73

[Close]

BLAST of CsGy1G026310 vs. TrEMBL
Match: tr|A0A0A0LZ58|A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MAKLGAIFSWVFVAFLVLYAGSMNTNAQLCCNNHRELGSCVPGVDD--DYDGKCWHHCIV 60
          MAK+G I S V V FLV Y+G++N NA +CCNN+  LGSC PGVDD    +GKCW  C  
Sbjct: 1  MAKVGLI-SCVLVVFLVFYSGNLNANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTS 60

Query: 61 GCERGGFCKKL 70
          GC +GGFCK++
Sbjct: 61 GCTKGGFCKRV 70

[Close]

BLAST of CsGy1G026310 vs. TrEMBL
Match: tr|A0A0D2RAJ9|A0A0D2RAJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G072300 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 30 CCNNHRELGSCVPGVDD--DYDGKCWHHCIVGCERGGFCKKLWYGH 74
          CCNNH ELG CVPG DD  D DGKCW++CIV CERGG CK +  GH
Sbjct: 46 CCNNHPELGKCVPGEDDNPDKDGKCWNYCIVDCERGGVCKLMSDGH 91

The following BLAST results are available for this feature:

BLAST of CsGy1G026310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66133.1	3.3e-39	100.00	hypothetical protein Csa_1G573030 [Cucumis sativus]	[more]
KGN66136.1	6.0e-25	78.26	hypothetical protein Csa_1G573060 [Cucumis sativus]	[more]
KGN66134.1	1.4e-18	60.27	hypothetical protein Csa_1G573040 [Cucumis sativus]	[more]
KGN66137.1	5.7e-15	57.75	hypothetical protein Csa_1G573070 [Cucumis sativus]	[more]
KJB28843.1	3.8e-11	69.57	hypothetical protein B456_005G072200, partial [Gossypium raimondii]	[more]

BLAST of CsGy1G026310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52605.1	5.5e-12	55.32	Defensin-like (DEFL) family protein	[more]
AT4G14276.1	1.6e-11	38.27	Defensin-like (DEFL) family protein	[more]
AT4G18823.1	2.2e-05	37.68	Defensin-like (DEFL) family protein	[more]

BLAST of CsGy1G026310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V2S1\|DEF20_ARATH	9.8e-11	55.32	Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 P...	[more]
sp\|P0CAX9\|DEF21_ARATH	2.9e-10	38.27	Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1	[more]
sp\|Q2L6T3\|DEF27_ARATH	4.0e-04	37.68	Putative defensin-like protein 27 OS=Arabidopsis thaliana OX=3702 GN=At4g18823 P...	[more]

BLAST of CsGy1G026310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWJ9\|A0A0A0LWJ9_CUCSA	2.2e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=4 SV=1	[more]
tr\|A0A0A0M1N0\|A0A0A0M1N0_CUCSA	4.0e-25	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=4 SV=1	[more]
tr\|A0A0A0LYL5\|A0A0A0LYL5_CUCSA	9.5e-19	60.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=4 SV=1	[more]
tr\|A0A0A0LZ58\|A0A0A0LZ58_CUCSA	3.7e-15	57.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573070 PE=4 SV=1	[more]
tr\|A0A0D2RAJ9\|A0A0D2RAJ9_GOSRA	2.5e-11	69.57	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G072300 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0050832	defense response to fungus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR022618	Defensin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026310.1	CsGy1G026310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..73
IPR022618	Defensin-like protein	PFAM	PF10868	Defensin_like	coord: 29..69 e-value: 2.2E-9 score: 37.8
IPR022618	Defensin-like protein	PANTHER	PTHR34453	FAMILY NOT NAMED	coord: 1..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G026310	Csa1G573030	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G026310	MELO3C015370	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G026310	ClCG03G016530	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G026310	CSPI01G27130	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G026310	MELO3C029307.2	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G026310	CsaV3_1G039450	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G026310	Cla97C03G066830	Watermelon (97103) v2	cgybwmbB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G026310	Watermelon (97103) v1	cgybwmB022
CsGy1G026310	Silver-seed gourd	carcgybB0761
CsGy1G026310	Wax gourd	cgybwgoB101
CsGy1G026310	Cucurbita maxima (Rimu)	cgybcmaB022
CsGy1G026310	Cucurbita maxima (Rimu)	cgybcmaB054
CsGy1G026310	Cucurbita moschata (Rifu)	cgybcmoB022
CsGy1G026310	Cucurbita moschata (Rifu)	cgybcmoB050
CsGy1G026310	Cucurbita pepo (Zucchini)	cgybcpeB027
CsGy1G026310	Cucurbita pepo (Zucchini)	cgybcpeB143
CsGy1G026310	Bottle gourd (USVL1VR-Ls)	cgyblsiB055