Cucsa.289210 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.289210
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDefensin-like family protein, putative
Locationscaffold02698 : 671799 .. 671977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGGTGGATTCTGTAAACATCTCAGTGATAAAAATGTCTGTCATTGTTATTGTTGA

mRNA sequence

GGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGGTGGATTCTGTAAACATCTCAGTGATAAAAATGTCTGTCATTGTTATTGTTGA

Coding sequence (CDS)

GGAGTACGAATACAAATGCACAATTGTGTTGCAACAATCATCCAGAGTTGGGAGAATGCGAGGCAGGAGTAGACGATGCAAATGATGGGAAGTGTTGGCTTCATTGCATTGCTGGTTGTGAGAAAGGTGGATTCTGTAAACATCTCAGTGATAAAAATGTCTGTCATTGTTATTGTTGA

Protein sequence

STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC*
Homology
[Close]
BLAST of Cucsa.289210 vs. Swiss-Prot
Match: DEF20_ARATH (Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.8e-14
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 8  LCCNNHPELGECEAGVDD--ANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +CC  HP +G C  G+DD    DGKCW  CI GCE GGFCK    K++CHC C
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]
BLAST of Cucsa.289210 vs. Swiss-Prot
Match: DEF22_ARATH (Defensin-like protein 22 OS=Arabidopsis thaliana GN=At5g08315 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCE--KGGFCKHLSDKNVCHCYC 59
          +      LCCNNHP+ G+C    DD    +C   C+ GC+  KGG+CK +S    CHCYC
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHGGQCHCYC 82

[Close]
BLAST of Cucsa.289210 vs. Swiss-Prot
Match: DEF25_ARATH (Putative defensin-like protein 25 OS=Arabidopsis thaliana GN=At5g08055 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-08
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +  +   LCCNNHP+ G+C    D+    + W H   G  KG +CK +S   +CHCYC
Sbjct: 25 NVESGGSLCCNNHPKFGKCNTNNDNQRCNR-WCHNGCGNGKGDYCKAMSHGGLCHCYC 81

[Close]
BLAST of Cucsa.289210 vs. Swiss-Prot
Match: DEF26_ARATH (Putative defensin-like protein 26 OS=Arabidopsis thaliana GN=At1g33607 PE=5 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-06
Identity = 21/58 (36.21%), Postives = 30/58 (51.72%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +  +   LCCN+HP+ G+C    D+    + W H   G  KGG+ K +S    CH YC
Sbjct: 25 NVESGGSLCCNSHPKFGKCNTNNDEQRCNR-WCHNGCGNGKGGYYKSMSHGGQCHYYC 81

[Close]
BLAST of Cucsa.289210 vs. TrEMBL
Match: A0A0A0M1N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-30
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC
Sbjct: 22 SMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. TrEMBL
Match: A0A0A0LYL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 9.9e-21
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GCEKGG CK +  K+VCHCYC
Sbjct: 22 SLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. TrEMBL
Match: A0A0A0LWJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.9e-20
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCCNNH ELG C  GVDD  DGKCW HCI GCE+GGFCK L   +VCHCYC
Sbjct: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. TrEMBL
Match: A0A0A0LW61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 3  NTNAQLCCNNHPELGECEAGVDDAN--DGKCWLHCIAGCEKGGFCKHL--SDKNVCHCYC 59
          N NA +CCNN+P LG C+ GVDD+   +GKCW  C +GC KGGFCK +  + ++VCHCYC
Sbjct: 8  NANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCHCYC 67

[Close]
BLAST of Cucsa.289210 vs. TrEMBL
Match: A0A0A0LZ58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 3  NTNAQLCCNNHPELGECEAGVDDAN--DGKCWLHCIAGCEKGGFCKHL--SDKNVCHCYC 59
          N NA +CCNN+P LG C+ GVDD+   +GKCW  C +GC KGGFCK +  + ++VCHCYC
Sbjct: 23 NANAAVCCNNNPSLGSCKPGVDDSPQANGKCWRLCTSGCTKGGFCKRVGRNGRHVCHCYC 82

[Close]
BLAST of Cucsa.289210 vs. TAIR10
Match: AT5G52605.1 (AT5G52605.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-15
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 8  LCCNNHPELGECEAGVDD--ANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +CC  HP +G C  G+DD    DGKCW  CI GCE GGFCK    K++CHC C
Sbjct: 36 ICCKEHPSVGRCLPGIDDDAEKDGKCWKFCIEGCETGGFCKLFEHKHICHCNC 88

[Close]
BLAST of Cucsa.289210 vs. TAIR10
Match: AT5G08315.1 (AT5G08315.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 8.3e-11
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCE--KGGFCKHLSDKNVCHCYC 59
          +      LCCNNHP+ G+C    DD    +C   C+ GC+  KGG+CK +S    CHCYC
Sbjct: 26 NVENGGSLCCNNHPKFGKCNTKNDDQ---RCNSWCLNGCDNGKGGYCKSMSHGGQCHCYC 82

[Close]
BLAST of Cucsa.289210 vs. TAIR10
Match: AT5G08055.1 (AT5G08055.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-09
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +  +   LCCNNHP+ G+C    D+    + W H   G  KG +CK +S   +CHCYC
Sbjct: 25 NVESGGSLCCNNHPKFGKCNTNNDNQRCNR-WCHNGCGNGKGDYCKAMSHGGLCHCYC 81

[Close]
BLAST of Cucsa.289210 vs. TAIR10
Match: AT1G33607.1 (AT1G33607.1 Defensin-like (DEFL) family protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-07
Identity = 21/58 (36.21%), Postives = 30/58 (51.72%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +  +   LCCN+HP+ G+C    D+    + W H   G  KGG+ K +S    CH YC
Sbjct: 25 NVESGGSLCCNSHPKFGKCNTNNDEQRCNR-WCHNGCGNGKGGYYKSMSHGGQCHYYC 81

[Close]
BLAST of Cucsa.289210 vs. NCBI nr
Match: gi|700211040|gb|KGN66136.1| (hypothetical protein Csa_1G573060 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-30
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC
Sbjct: 22 SMNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. NCBI nr
Match: gi|700211038|gb|KGN66134.1| (hypothetical protein Csa_1G573040 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCC NHPE G C+ GVDDA DG+CWL CI GCEKGG CK +  K+VCHCYC
Sbjct: 22 SLNTNAQLCCINHPEWGACKPGVDDATDGRCWLKCIGGCEKGGICKRVGKKHVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. NCBI nr
Match: gi|659100545|ref|XP_008451146.1| (PREDICTED: defensin-like protein 22 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-20
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 1   STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
           S NTNAQLCC NHPE G C  GVDDA DG+CW  CI GCEKGGFCK +  K+VCHCYC
Sbjct: 49  SLNTNAQLCCINHPEWGACWPGVDDATDGRCWRRCIGGCEKGGFCKRVGRKHVCHCYC 106

[Close]
BLAST of Cucsa.289210 vs. NCBI nr
Match: gi|659100545|ref|XP_008451146.1| (PREDICTED: defensin-like protein 22 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 9.5e-17
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVC 55
          S NTNAQLCCNNHPELG C+ GVDD  DGKCWLHCIAGCEKGGF    ++  +C
Sbjct: 4  SMNTNAQLCCNNHPELGSCKPGVDDDYDGKCWLHCIAGCEKGGFWSLNTNAQLC 57


HSP 2 Score: 104.4 bits (259), Expect = 7.1e-20
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 1  STNTNAQLCCNNHPELGECEAGVDDANDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          S NTNAQLCCNNH ELG C  GVDD  DGKCW HCI GCE+GGFCK L   +VCHCYC
Sbjct: 22 SMNTNAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVGCERGGFCKKLWYGHVCHCYC 79

[Close]
BLAST of Cucsa.289210 vs. NCBI nr
Match: gi|727555801|ref|XP_010450072.1| (PREDICTED: putative defensin-like protein 20 [Camelina sativa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 8  LCCNNHPELGECEAGVDDA--NDGKCWLHCIAGCEKGGFCKHLSDKNVCHCYC 59
          +CC  HP LG C  G+DD   NDGKCW +C+ GCE+GGFCK   +K++CHCYC
Sbjct: 40 ICCREHPSLGRCLPGIDDKADNDGKCWKYCVEGCERGGFCKLFGNKHICHCYC 92

The following BLAST results are available for this feature:
BLAST of Cucsa.289210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEF20_ARATH5.8e-1454.72Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1[more]
DEF22_ARATH1.5e-0943.33Defensin-like protein 22 OS=Arabidopsis thaliana GN=At5g08315 PE=2 SV=1[more]
DEF25_ARATH2.1e-0839.66Putative defensin-like protein 25 OS=Arabidopsis thaliana GN=At5g08055 PE=3 SV=1[more]
DEF26_ARATH5.8e-0636.21Putative defensin-like protein 26 OS=Arabidopsis thaliana GN=At1g33607 PE=5 SV=1[more]
BLAST of Cucsa.289210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1N0_CUCSA1.4e-3098.28Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573060 PE=4 SV=1[more]
A0A0A0LYL5_CUCSA9.9e-2172.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573040 PE=4 SV=1[more]
A0A0A0LWJ9_CUCSA4.9e-2074.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573030 PE=4 SV=1[more]
A0A0A0LW61_CUCSA9.0e-1456.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573050 PE=4 SV=1[more]
A0A0A0LZ58_CUCSA9.0e-1456.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573070 PE=4 SV=1[more]
BLAST of Cucsa.289210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52605.13.3e-1554.72 Defensin-like (DEFL) family protein[more]
AT5G08315.18.3e-1143.33 Defensin-like (DEFL) family protein[more]
AT5G08055.11.2e-0939.66 Defensin-like (DEFL) family protein[more]
AT1G33607.13.3e-0736.21 Defensin-like (DEFL) family protein[more]
BLAST of Cucsa.289210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211040|gb|KGN66136.1|2.0e-3098.28hypothetical protein Csa_1G573060 [Cucumis sativus][more]
gi|700211038|gb|KGN66134.1|1.4e-2072.41hypothetical protein Csa_1G573040 [Cucumis sativus][more]
gi|659100545|ref|XP_008451146.1|4.1e-2072.41PREDICTED: defensin-like protein 22 [Cucumis melo][more]
gi|659100545|ref|XP_008451146.1|9.5e-1772.22PREDICTED: defensin-like protein 22 [Cucumis melo][more]
gi|727555801|ref|XP_010450072.1|1.2e-1458.49PREDICTED: putative defensin-like protein 20 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022618Defensin-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0050832defense response to fungus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
cellular_component GO:0005576 extracellular region
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.289210.1Cucsa.289210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022618Defensin-like proteinPFAMPF10868Defensin_likecoord: 8..58
score: 5.1
NoneNo IPR availablePANTHERPTHR34453FAMILY NOT NAMEDcoord: 8..58
score: 2.5
NoneNo IPR availablePANTHERPTHR34453:SF1DEFENSIN-LIKE (DEFL) FAMILY PROTEIN-RELATEDcoord: 8..58
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.289210Csa1G573030Cucumber (Chinese Long) v2cgycuB414
Cucsa.289210MELO3C015370Melon (DHL92) v3.5.1cgymeB481
Cucsa.289210ClCG03G016530Watermelon (Charleston Gray)cgywcgB505
Cucsa.289210CSPI01G27130Wild cucumber (PI 183967)cgycpiB437
Cucsa.289210MELO3C029307.2Melon (DHL92) v3.6.1cgymedB480
Cucsa.289210CsaV3_1G039450Cucumber (Chinese Long) v3cgycucB446
Cucsa.289210Cla97C03G066830Watermelon (97103) v2cgywmbB506
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.289210Cucurbita maxima (Rimu)cgycmaB0809
Cucsa.289210Cucurbita moschata (Rifu)cgycmoB0802
Cucsa.289210Watermelon (97103) v1cgywmB531
Cucsa.289210Bottle gourd (USVL1VR-Ls)cgylsiB471