MELO3C026725.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026725.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein
Location	chr08 : 18726974 .. 18727772 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGTCCATTAACCACAAGGTCTCAGTATAACGCGACTGAACAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCGAAACGCCCTCGCCGACGCCGACAAGTGTCTGAAATATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTTATTTTGATTCCTCCGTTGAAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTCCTGGCTCCTGTGGAGCTTCAATAACTGGTTTATTTTTAATCATTAACTTCGGACATATTTGACGTAAATGTCAAGTATTTAAGAATTTTAACTTTCTGCTATGTTTCAATTCAGCTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTGCTGGAAGTCTTATGACATTGATTTTCGTG

mRNA sequence

TCTTGTCCATTAACCACAAGGTCTCAGTATAACGCGACTGAACAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCGAAACGCCCTCGCCGACGCCGACAAGTGTCTGAAATATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTTATTTTGATTCCTCCGTTGAAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTCCTGGCTCCTGTGGAGCTTCAATAACTGGTTTATTTTTAATCATTAACTTCGGACATATTTGACGTAAATGTCAAGTATTTAAGAATTTTAACTTTCTGCTATGTTTCAATTCAGCTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTGCTGGAAGTCTTATGACATTGATTTTCGTG

Coding sequence (CDS)

ATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGA

Protein sequence

MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD

Homology

[Close]

BLAST of MELO3C026725.2 vs. NCBI nr
Match: XP_008465110.1 (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725.2 vs. NCBI nr
Match: XP_004150765.1 (PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hypothetical protein Csa_4G173560 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 9.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725.2 vs. NCBI nr
Match: XP_022928682.1 (uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 uncharacterized protein LOC111803776 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 1.7e-52
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+ PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

[Close]

BLAST of MELO3C026725.2 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 3.8e-52
Identity = 101/108 (93.52%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR L SLRTRGGAA G+SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L ISGSGSSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of MELO3C026725.2 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 6.6e-52
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR L +LRTRGGAAAG+SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME +GIS SGSSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of MELO3C026725.2 vs. TAIR10
Match: AT3G57785.1 (unknown protein)

HSP 1 Score: 166.4 bits (420), Expect = 9.8e-42
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 14  GGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHEE PKGY  NRTPPPPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           AKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of MELO3C026725.2 vs. TAIR10
Match: AT2G42310.1 (unknown protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-41
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   LRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTS 61
           LR+R  S     G  +AG SRW +PGHEE PKGY  NRTPP PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFS---RSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of MELO3C026725.2 vs. TrEMBL
Match: tr|A0A1S3CN13|A0A1S3CN13_CUCME (uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.0e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725.2 vs. TrEMBL
Match: tr|A0A0A0KYE7|A0A0A0KYE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725.2 vs. TrEMBL
Match: tr|I3NMS3|I3NMS3_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.1e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGGAAAG SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of MELO3C026725.2 vs. TrEMBL
Match: tr|A0A067KZT1|A0A067KZT1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGG AAG SRWTSPGHEE PKGYLFNRTPPP GQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of MELO3C026725.2 vs. TrEMBL
Match: tr|A0A2P5F1J3|A0A2P5F1J3_9ROSA (NADH:ubiquinone oxidoreductase, ESSS subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_124890 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.9e-49
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R +S+LRTR GAAAG SRW SPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRQRLVSALRTRSGAAAGPSRWASPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE E+LG++ SGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEKEQLGLTASGSSESD 108

The following BLAST results are available for this feature:

BLAST of MELO3C026725.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465110.1	1.5e-56	100.00	PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo]	[more]
XP_004150765.1	9.1e-54	97.22	PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hy...	[more]
XP_022928682.1	1.7e-52	94.44	uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 unchar...	[more]
XP_022966491.1	3.8e-52	93.52	uncharacterized protein LOC111466129 [Cucurbita maxima]	[more]
XP_022151653.1	6.6e-52	91.67	uncharacterized protein LOC111019565 [Momordica charantia]	[more]

BLAST of MELO3C026725.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57785.1	9.8e-42	81.32	unknown protein	[more]
AT2G42310.1	1.3e-41	75.73	unknown protein	[more]

BLAST of MELO3C026725.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026725.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CN13\|A0A1S3CN13_CUCME	1.0e-56	100.00	uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=...	[more]
tr\|A0A0A0KYE7\|A0A0A0KYE7_CUCSA	6.1e-54	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1	[more]
tr\|I3NMS3\|I3NMS3_HEVBR	4.1e-50	91.51	Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1	[more]
tr\|A0A067KZT1\|A0A067KZT1_JATCU	1.2e-49	90.57	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1	[more]
tr\|A0A2P5F1J3\|A0A2P5F1J3_9ROSA	5.9e-49	87.96	NADH:ubiquinone oxidoreductase, ESSS subunit OS=Trema orientalis OX=63057 GN=Tor...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026725.2.1	MELO3C026725.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR31339:SF38	EXPRESSED PROTEIN	coord: 2..63
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 2..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026725.2	Csa4G173560	Cucumber (Chinese Long) v2	cumedB313
MELO3C026725.2	CSPI04G10840	Wild cucumber (PI 183967)	cpimedB315
MELO3C026725.2	Cucsa.164380	Cucumber (Gy14) v1	cgymedB282
MELO3C026725.2	CmaCh07G013060	Cucurbita maxima (Rimu)	cmamedB908
MELO3C026725.2	CmoCh07G013510	Cucurbita moschata (Rifu)	cmomedB898
MELO3C026725.2	CmoCh03G000840	Cucurbita moschata (Rifu)	cmomedB691
MELO3C026725.2	Lsi01G019110	Bottle gourd (USVL1VR-Ls)	lsimedB161
MELO3C026725.2	Cp4.1LG19g00710	Cucurbita pepo (Zucchini)	cpemedB534
MELO3C026725.2	Cp4.1LG10g11740	Cucurbita pepo (Zucchini)	cpemedB094
MELO3C026725.2	CsGy4G010430	Cucumber (Gy14) v2	cgybmedB281
MELO3C026725.2	Cla008083	Watermelon (97103) v1	medwmB578
MELO3C026725.2	ClCG04G000490	Watermelon (Charleston Gray)	medwcgB525
MELO3C026725.2	Cla97C04G068840	Watermelon (97103) v2	medwmbB529
MELO3C026725.2	Bhi03G002154	Wax gourd	medwgoB653
MELO3C026725.2	Carg12733	Silver-seed gourd	carmedB0299
MELO3C026725.2	Carg22469	Silver-seed gourd	carmedB0199
MELO3C026725.2	CsaV3_4G011920	Cucumber (Chinese Long) v3	cucmedB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None