CmoCh07G013510 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G013510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Complex I subunit
Location	Cmo_Chr07 : 7645541 .. 7645903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGTACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

mRNA sequence

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGTACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

Coding sequence (CDS)

ATGCCGTCGCCAACGCCCTTTGCAACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCAGGACCCGCGGTGGCGCCGCCACAGGCCAGAGCCGGTGGACCAGTCCCGGCCACGAGGAGAAGCCAAAGGGCTATCTTTTCAATCGTACGCCGCCTCCGCCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTAGAGCGTCTTGAGATGGAGAATCTGGCTATGTCTGGCTCTGGATCATCTGAATCTGATTGA

Homology

[Close]

BLAST of CmoCh07G013510 vs. TrEMBL
Match: A0A067KZT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-53
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSP PF TAS MLR RL  SLRTRGG A G SRWTSPGHEE+PKGYLFNRTPPP GQSR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of CmoCh07G013510 vs. TrEMBL
Match: I3NMS3_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.1e-53
Identity = 102/118 (86.44%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPS  PF TAS+MLR RL  SLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSQQPFTTASSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of CmoCh07G013510 vs. TrEMBL
Match: A0A0A0KYE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-51
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72
           MLRHRLL SLRTRGGAA G+SRWTSPGHEE+PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 121
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh07G013510 vs. TrEMBL
Match: T2DNS9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G256600g PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-49
Identity = 96/118 (81.36%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MP PTPFATAS  LR R+L SLRTRGGA +G SRWTSPGHEE PKGYLFNRTP PPGQSR
Sbjct: 1   MPLPTPFATASATLRRRILQSLRTRGGAESGPSRWTSPGHEEHPKGYLFNRTPLPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAH+KALERL++EN   + + SSE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHEKALERLKIENALAANNDSSE 118

[Close]

BLAST of CmoCh07G013510 vs. TrEMBL
Match: A0A0S3SUH4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G334700 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-49
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MP  TPFATAS  +R R+L SLRTRGGA +G SRWTSPGHEE+PKGYLFNRTPPPPGQ+R
Sbjct: 1   MPPATPFATASATIRRRVLQSLRTRGGAESGPSRWTSPGHEERPKGYLFNRTPPPPGQAR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
            WEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAH+KALERL++EN   S + SSE
Sbjct: 61  NWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHEKALERLKIENALASNNDSSE 118

[Close]

BLAST of CmoCh07G013510 vs. TAIR10
Match: AT3G57785.1 (AT3G57785.1 unknown protein)

HSP 1 Score: 173.3 bits (438), Expect = 8.9e-44
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           M S  P   A+  LR+R+    R+ G  +TG SRW +PGHEE+PKGY  NRTPPPPGQSR
Sbjct: 1   MASTKPLIVAAKTLRNRI--HFRS-GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of CmoCh07G013510 vs. TAIR10
Match: AT2G42310.1 (AT2G42310.1 unknown protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-42
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPS      A+  LR+R+       G  + G SRW +PGHEE+PKGY  NRTPP PGQSR
Sbjct: 1   MPSTQSLTVAAKTLRNRIFSR---SGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of CmoCh07G013510 vs. NCBI nr
Match: gi|802600701|ref|XP_012073026.1| (PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas])

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-53
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPSP PF TAS MLR RL  SLRTRGG A G SRWTSPGHEE+PKGYLFNRTPPP GQSR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of CmoCh07G013510 vs. NCBI nr
Match: gi|313586599|gb|ADR71310.1| (hypothetical protein 32 [Hevea brasiliensis])

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-53
Identity = 102/118 (86.44%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MPS  PF TAS+MLR RL  SLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSQQPFTTASSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of CmoCh07G013510 vs. NCBI nr
Match: gi|659130326|ref|XP_008465110.1| (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 8.3e-52
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72
           MLRHR L SLRTRGGAA G+SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 121
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh07G013510 vs. NCBI nr
Match: gi|449466101|ref|XP_004150765.1| (PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-51
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72
           MLRHRLL SLRTRGGAA G+SRWTSPGHEE+PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 121
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh07G013510 vs. NCBI nr
Match: gi|951021593|ref|XP_014512713.1| (PREDICTED: uncharacterized protein LOC106771273 [Vigna radiata var. radiata])

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-50
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 1


Query: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60
           MP  TPFATAS  +R R+L SLRTRGGA +G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPPATPFATASATIRRRVLQSLRTRGGAESGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAH+KALERL++EN   S + SSE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHEKALERLKIENALASNNDSSE 118

The following BLAST results are available for this feature:

BLAST of CmoCh07G013510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G013510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KZT1_JATCU	1.8e-53	86.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1	[more]
I3NMS3_HEVBR	3.1e-53	86.44	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A0A0KYE7_CUCSA	1.3e-51	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1	[more]
T2DNS9_PHAVU	2.1e-49	81.36	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G256600g PE=2 SV=1	[more]
A0A0S3SUH4_PHAAN	3.5e-49	79.66	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G334700 PE=...	[more]

BLAST of CmoCh07G013510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57785.1	8.9e-44	71.55	unknown protein	[more]
AT2G42310.1	1.3e-42	68.97	unknown protein	[more]

BLAST of CmoCh07G013510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802600701\|ref\|XP_012073026.1\|	2.6e-53	86.44	PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]	[more]
gi\|313586599\|gb\|ADR71310.1\|	4.4e-53	86.44	hypothetical protein 32 [Hevea brasiliensis]	[more]
gi\|659130326\|ref\|XP_008465110.1\|	8.3e-52	92.59	PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo]	[more]
gi\|449466101\|ref\|XP_004150765.1\|	1.9e-51	92.59	PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus]	[more]
gi\|951021593\|ref\|XP_014512713.1\|	6.0e-50	81.36	PREDICTED: uncharacterized protein LOC106771273 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G013510.1	CmoCh07G013510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..110 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G013510	CmaCh07G013060	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G013510	Cla008083	Watermelon (97103) v1	cmowmB819
CmoCh07G013510	Csa4G173560	Cucumber (Chinese Long) v2	cmocuB857
CmoCh07G013510	MELO3C026725	Melon (DHL92) v3.5.1	cmomeB794
CmoCh07G013510	ClCG04G000490	Watermelon (Charleston Gray)	cmowcgB771
CmoCh07G013510	CSPI04G10840	Wild cucumber (PI 183967)	cmocpiB865
CmoCh07G013510	Lsi01G019110	Bottle gourd (USVL1VR-Ls)	cmolsiB780
CmoCh07G013510	Cp4.1LG19g00710	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G013510	Cp4.1LG10g11740	Cucurbita pepo (Zucchini)	cmocpeB803
CmoCh07G013510	MELO3C026725.2	Melon (DHL92) v3.6.1	cmomedB898
CmoCh07G013510	CsaV3_4G011920	Cucumber (Chinese Long) v3	cmocucB1008
CmoCh07G013510	Cla97C04G068840	Watermelon (97103) v2	cmowmbB869
CmoCh07G013510	Bhi03G002154	Wax gourd	cmowgoB1068
CmoCh07G013510	CsGy4G010430	Cucumber (Gy14) v2	cgybcmoB546
CmoCh07G013510	Carg12733	Silver-seed gourd	carcmoB0395
CmoCh07G013510	Carg22469	Silver-seed gourd	carcmoB0275

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G013510	CmoCh03G000840	Cucurbita moschata (Rifu)	cmocmoB461

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G013510	Cucurbita maxima (Rimu)	cmacmoB674
CmoCh07G013510	Bottle gourd (USVL1VR-Ls)	cmolsiB778
CmoCh07G013510	Melon (DHL92) v3.6.1	cmomedB897