MELO3C026725 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026725
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase subunit beta
Location	chr8 : 17250557 .. 17251355 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGTCCATTAACCACAAGGTCTCAGTATAACGCGACTGAACAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCGAAACGCCCTCGCCGACGCCGACAAGTGTCTGAAATATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTTATTTTGATTCCTCCGTTGAAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTCCTGGCTCCTGTGGAGCTTCAATAACTGGTTTATTTTTAATCATTAACTTCGGACATATTTGACGTAAATGTCAAGTATTTAAGAATTTTAACTTTCTGCTATGTTTCAATTCAGCTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTGCTGGAAGTCTTATGACATTGATTTTCGTG

mRNA sequence

TCTTGTCCATTAACCACAAGGTCTCAGTATAACGCGACTGAACAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCGAAACGCCCTCGCCGACGCCGACAAGTGTCTGAAATATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTTATTTTGATTCCTCCGTTGAAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTCCTGGCTCCTGTGGAGCTTCAATAACTGGTTTATTTTTAATCATTAACTTCGGACATATTTGACGTAAATGTCAAGTATTTAAGAATTTTAACTTTCTGCTATGTTTCAATTCAGCTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTGCTGGAAGTCTTATGACATTGATTTTCGTG

Coding sequence (CDS)

ATGCTCCGACACCGCTTTCTCTCTTCACTCCGCACCCGTGGTGGAGCCGCCGCCGGACGGAGCCGGTGGACCAGTCCCGGTCACGAGGAACACCCCAAGGGCTATCTTTTCAATCGGACACCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTAATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTTGAGCGCCTTGAGATGGAGAAGCTGGGTATATCTGGCTCTGGATCATCTGAATCTGATTGA

Protein sequence

MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD*

Homology

[Close]

BLAST of MELO3C026725 vs. TrEMBL
Match: A0A0A0KYE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725 vs. TrEMBL
Match: I3NMS3_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGGAAAG SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of MELO3C026725 vs. TrEMBL
Match: A0A067KZT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.8e-50
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGG AAG SRWTSPGHEE PKGYLFNRTPPP GQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of MELO3C026725 vs. TrEMBL
Match: A9PBM3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05190g PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-47
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR  S+LRTRGGA AG SRW SPGHEE PKG+  NRTPPPPG+SRKWEDWELPCY+T
Sbjct: 9   MLRHRISSALRTRGGAKAGPSRWKSPGHEEQPKGHFLNRTPPPPGESRKWEDWELPCYIT 68

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERL+MEKLG+SGS  SE
Sbjct: 69  SFLTIVILGVGLNAKPDLTIETWAHQKALERLQMEKLGLSGSADSE 114

[Close]

BLAST of MELO3C026725 vs. TrEMBL
Match: M5VRM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013695mg PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-46
Identity = 90/108 (83.33%), Postives = 98/108 (90.74%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R + +LRTRGG+A G SRWTSPGHEE PKGYLFNRTP  PGQ+RKWEDWELPCYVT
Sbjct: 1   MLRQRLIQTLRTRGGSATGPSRWTSPGHEEQPKGYLFNRTPLSPGQTRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE+E+ G+S +GSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEIEQAGLSVAGSSESD 108

[Close]

BLAST of MELO3C026725 vs. TAIR10
Match: AT3G57785.1 (AT3G57785.1 unknown protein)

HSP 1 Score: 166.4 bits (420), Expect = 9.9e-42
Identity = 74/91 (81.32%), Postives = 77/91 (84.62%), Query Frame = 1


Query: 14  GGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHEE PKGY  NRTPPPPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           AKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of MELO3C026725 vs. TAIR10
Match: AT2G42310.1 (AT2G42310.1 unknown protein)

HSP 1 Score: 166.4 bits (420), Expect = 9.9e-42
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 1


Query: 2   LRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVTS 61
           LR+R  S     G  +AG SRW +PGHEE PKGY  NRTPP PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFSR---SGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of MELO3C026725 vs. NCBI nr
Match: gi|659130326|ref|XP_008465110.1| (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-57
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725 vs. NCBI nr
Match: gi|449466101|ref|XP_004150765.1| (PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of MELO3C026725 vs. NCBI nr
Match: gi|313586599|gb|ADR71310.1| (hypothetical protein 32 [Hevea brasiliensis])

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGGAAAG SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of MELO3C026725 vs. NCBI nr
Match: gi|802600701|ref|XP_012073026.1| (PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas])

HSP 1 Score: 205.3 bits (521), Expect = 5.4e-50
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLR R  SSLRTRGG AAG SRWTSPGHEE PKGYLFNRTPPP GQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of MELO3C026725 vs. NCBI nr
Match: gi|657999365|ref|XP_008392118.1| (PREDICTED: uncharacterized protein LOC103454289 [Malus domestica])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 1


Query: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR + +LRTRGG+A G SRWTSPGHEE PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLVQALRTRGGSATGPSRWTSPGHEEQPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE+E+  +S +GS ESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEIEQAALSVAGSGESD 108

The following BLAST results are available for this feature:

BLAST of MELO3C026725 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE7_CUCSA	1.5e-54	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1	[more]
I3NMS3_HEVBR	1.3e-50	91.51	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A067KZT1_JATCU	3.8e-50	90.57	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1	[more]
A9PBM3_POPTR	1.8e-47	84.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05190g PE=2 SV=1	[more]
M5VRM2_PRUPE	1.5e-46	83.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013695mg PE=4 SV=1	[more]

BLAST of MELO3C026725 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57785.1	9.9e-42	81.32	unknown protein	[more]
AT2G42310.1	9.9e-42	75.73	unknown protein	[more]

BLAST of MELO3C026725 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130326\|ref\|XP_008465110.1\|	3.5e-57	100.00	PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo]	[more]
gi\|449466101\|ref\|XP_004150765.1\|	2.1e-54	97.22	PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus]	[more]
gi\|313586599\|gb\|ADR71310.1\|	1.9e-50	91.51	hypothetical protein 32 [Hevea brasiliensis]	[more]
gi\|802600701\|ref\|XP_012073026.1\|	5.4e-50	90.57	PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]	[more]
gi\|657999365\|ref\|XP_008392118.1\|	1.7e-48	85.19	PREDICTED: uncharacterized protein LOC103454289 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46594	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026725T1	MELO3C026725T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46594	MU46594	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..96 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026725	Cla008083	Watermelon (97103) v1	mewmB588
MELO3C026725	ClCG04G000490	Watermelon (Charleston Gray)	mewcgB526
MELO3C026725	Cla97C04G068840	Watermelon (97103) v2	mewmbB534
MELO3C026725	Bhi03G002154	Wax gourd	mewgoB642
MELO3C026725	CmaCh07G013060	Cucurbita maxima (Rimu)	cmameB810
MELO3C026725	CmoCh07G013510	Cucurbita moschata (Rifu)	cmomeB794
MELO3C026725	CmoCh03G000840	Cucurbita moschata (Rifu)	cmomeB601
MELO3C026725	Lsi01G019110	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C026725	Cp4.1LG10g11740	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C026725	Cp4.1LG19g00710	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C026725	Carg22469	Silver-seed gourd	carmeB0195
MELO3C026725	Carg12733	Silver-seed gourd	carmeB0288

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026725	Cucurbita maxima (Rimu)	cmameB613