Cucsa.164380 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.164380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Location	scaffold01148 : 274103 .. 274837 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCAAAACGCCCTCGCCCACGCCGACTAGTGTCTGAAATATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTGATTCCTCCGCTGAAAAGGGGTTTCGGATATATGTTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTTCTACATGTTTTTGCTGGCTCCTTTGGAGATTCAATAACTGGTTTATTTTTAATTGTTAGCTTCGGACATATTTGACGTTGTAAATGTCAAGTGTTTAAGAATTTTAACTTTCTGCTATGTTATTCAGTTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTTTCTGGAAATCTTATGACATTGATTTTCGTGGAA

mRNA sequence

ATCGCCCGCACAGTCGCTGAAATCGAAGGATCAACCCAAAACGCCCTCGCCCACGCCGACTAGTGTCTGAAATATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTGATTCCTCCGCTGAAAAGGGGTTTCGGATATATGTTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTTCTACATGTTTTTGCTGGCTCCTTTGGAGATTCAATAACTGGTTTATTTTTAATTGTTAGCTTCGGACATATTTGACGTTGTAAATGTCAAGTGTTTAAGAATTTTAACTTTCTGCTATGTTATTCAGTTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTTTCTGGAAATCTTATGACATTGATTTTCGTGGAA

Coding sequence (CDS)

ATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGA

Protein sequence

MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD*

Homology

[Close]

BLAST of Cucsa.164380 vs. TrEMBL
Match: A0A0A0KYE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of Cucsa.164380 vs. TrEMBL
Match: I3NMS3_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL SSLRTRGGAAAG SRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of Cucsa.164380 vs. TrEMBL
Match: A0A067KZT1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL SSLRTRGG AAG SRWTSPGHEERPKGYLFNRTP P GQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of Cucsa.164380 vs. TrEMBL
Match: M5VRM2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013695mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.0e-48
Identity = 92/108 (85.19%), Postives = 101/108 (93.52%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL+ +LRTRGG+A G SRWTSPGHEE+PKGYLFNRTPL PGQ+RKWEDWELPCYVT
Sbjct: 1   MLRQRLIQTLRTRGGSATGPSRWTSPGHEEQPKGYLFNRTPLSPGQTRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE+E+ G+S +GSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEIEQAGLSVAGSSESD 108

[Close]

BLAST of Cucsa.164380 vs. TrEMBL
Match: A9P8B8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05570g PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-47
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR+ S+LRTRGGA++G  RWTSPGHEE+PKGYLFNRTPLPPGQ RKWEDWELPCY+T
Sbjct: 9   MLRHRISSALRTRGGASSG--RWTSPGHEEQPKGYLFNRTPLPPGQPRKWEDWELPCYIT 68

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE EKLG+SGS  SE
Sbjct: 69  SFLTIVILGVGLNAKPDLTIETWAHQKALERLETEKLGLSGSADSE 112

[Close]

BLAST of Cucsa.164380 vs. TAIR10
Match: AT2G42310.1 (AT2G42310.1 unknown protein)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-41
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 2   LRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTS 61
           LR+R+ S     G  +AG SRW +PGHEERPKGY  NRTP  PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFSR---SGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of Cucsa.164380 vs. TAIR10
Match: AT3G57785.1 (AT3G57785.1 unknown protein)

HSP 1 Score: 164.5 bits (415), Expect = 3.7e-41
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 1


Query: 14  GGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHEERPKGY  NRTP PPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           AKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

[Close]

BLAST of Cucsa.164380 vs. NCBI nr
Match: gi|449466101|ref|XP_004150765.1| (PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of Cucsa.164380 vs. NCBI nr
Match: gi|659130326|ref|XP_008465110.1| (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of Cucsa.164380 vs. NCBI nr
Match: gi|313586599|gb|ADR71310.1| (hypothetical protein 32 [Hevea brasiliensis])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL SSLRTRGGAAAG SRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of Cucsa.164380 vs. NCBI nr
Match: gi|802600701|ref|XP_012073026.1| (PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas])

HSP 1 Score: 204.9 bits (520), Expect = 7.1e-50
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL SSLRTRGG AAG SRWTSPGHEERPKGYLFNRTP P GQSRKWEDWELPCY+T
Sbjct: 13  MLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 107
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of Cucsa.164380 vs. NCBI nr
Match: gi|658057478|ref|XP_008364518.1| (PREDICTED: uncharacterized protein LOC103428200 [Malus domestica])

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-49
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLR RL+ +LRTRGG+A G SRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRQRLVQALRTRGGSATGPSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLE+E+ G+S +GS+ESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEIEQAGLSVAGSAESD 108

The following BLAST results are available for this feature:

BLAST of Cucsa.164380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE7_CUCSA	2.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G173560 PE=4 SV=1	[more]
I3NMS3_HEVBR	1.7e-50	92.45	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A067KZT1_JATCU	4.9e-50	91.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06813 PE=4 SV=1	[more]
M5VRM2_PRUPE	6.0e-48	85.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013695mg PE=4 SV=1	[more]
A9P8B8_POPTR	1.8e-47	86.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05570g PE=2 SV=1	[more]

BLAST of Cucsa.164380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42310.1	2.2e-41	75.73	unknown protein	[more]
AT3G57785.1	3.7e-41	81.32	unknown protein	[more]

BLAST of Cucsa.164380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449466101\|ref\|XP_004150765.1\|	3.0e-56	100.00	PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus]	[more]
gi\|659130326\|ref\|XP_008465110.1\|	2.1e-54	97.22	PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo]	[more]
gi\|313586599\|gb\|ADR71310.1\|	2.4e-50	92.45	hypothetical protein 32 [Hevea brasiliensis]	[more]
gi\|802600701\|ref\|XP_012073026.1\|	7.1e-50	91.51	PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]	[more]
gi\|658057478\|ref\|XP_008364518.1\|	4.6e-49	87.04	PREDICTED: uncharacterized protein LOC103428200 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.164380.1	Cucsa.164380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31339	FAMILY NOT NAMED	coord: 1..96 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.164380	Csa4G173560	Cucumber (Chinese Long) v2	cgycuB246
Cucsa.164380	CSPI04G10840	Wild cucumber (PI 183967)	cgycpiB253
Cucsa.164380	Cp4.1LG10g11740	Cucurbita pepo (Zucchini)	cgycpeB0451
Cucsa.164380	Cp4.1LG19g00710	Cucurbita pepo (Zucchini)	cgycpeB0452
Cucsa.164380	MELO3C026725.2	Melon (DHL92) v3.6.1	cgymedB282
Cucsa.164380	CsaV3_4G011920	Cucumber (Chinese Long) v3	cgycucB260
Cucsa.164380	Carg22469	Silver-seed gourd	carcgyB0233
Cucsa.164380	Carg12733	Silver-seed gourd	carcgyB0332

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None