MELO3C025738 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025738
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S12
Locationchr11 : 25603320 .. 25605552 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCGGTGAGGATTGGCTTAACAAAAGAACCCTACAGTATAAAAAGGGGCGAAGGAGACTCTAGGGTTTCATTTGCACACGGTGCGGCGGCGTCATCCAACCTAGCTTCGTCTTTGCCGGTTCCGGAGATCCTCAACTCACATTCACCATGGGGTATGTACTTTTTCCTTCTTCCTATTTTGTTCCCCTTATTTGTTTATAGTGATGAATCTTCTAGGGAAGGAAGTCCACAAGTAATCGAGATTTGAATGGCTTAATTGGATTCAACGCATTTGATAGATTGATAAATCAGTAGTTACTTTACAGGACGAGAATGGTTTGTATTAGCTTATCGTAGATGATTAAATATAATGAACGCCTTAGCAATTATTAAGAAGGATGGTGGACTCTCTTGTTGCTGTGTTGTCAATTCGAAATGTTTTGTGTTTTGTTATTGTCATTGGTTATTGCAAGGAGCGCGATCTCTTGATTAGTTTTGTTTGAGATAATGTCGATTTGTTTCGTTTCTCTCTCAAATTTATGTTTTGTTTTGTTACTATCGTTGCTAGATATCGGAGTAACACACTTTGTAGCTATTTATGGTTTTAGATATGAATATGCACTTAGATTTAATGTGAGCAAGTTGGTTTCTTTGATTCTAATATGATTTCACGTTTTTTTTTACAACGATGAGTGGATTTTGCTTGTTGTTTGACTGAAAAACAATTGAGATTGTTCACCATTCAACAAGTTGGCTATGCTCAGTACAAGGATTGTCGATGGTATTCGTATCCTTGTGATTTAGAGAAATACAATTGGTACGATTCTAGGATTTTTCTGGATCTCACAGGTTAACTGGGACGTTTGAGATGTGAATACTTTTCAAATGTTTTATTTTAGTTAATAGCCTTAAATCTAGAGGAAAATTTGATGAGGCTTTTAGGGAATTGGGAAAAAGGTTCATGTTTTTATGTTTTATGTTTTGGTGCAAATGGAAGTTGTATTCTCTTCGTTAAGTAGTAGTTATGTCTTACAGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATGTAAGATGATTTTATTTTATTTGTACTGTGCTTTTCTGGGGCTTACTTTGCAAAAACGTATTTAATATGTAATTTTCTGGTGCAACGTGCAGTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGTAAGTATTCAAGGGAAGCTTGGGATTTGATCATGGGAATTTTGGTTACTATTATCAAGATTGTTCTCTATTTTTTCAATAATATATGTATTGGCATCCCCAGGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAAGCTCCTCAGTTTTCCAAGATAGATTATGTTGCTATTTCCTCCAATTATTCTCCCTGAAGCAGTTAATGAGCAATTGATGCACACTTTCCCTCTATCCCTAGTTAAGTTAGATTACTCGGTTGACTGATAGAAACTTGTGCACCCAACCTTTTTGTTGAGACATGATAAAGCATAACTTTCTTTGCGAACAGAACAGATTCTGTTATGGTTAATTTGAGTGTAATACATCATCCCCTTCCCTTTCCATCAAATGCCATAAGTTTTGTTCTAGAATGATTCTGTTGATTCTAGTGCGAGTCTCTAGCTTTCACACTAATATTTTCAATTATCAGTAAGGAATTGTAGTGCTTAAGAGCTGTGATGTGCTATAGATTCATCTTTTATTTACAGAGATTGTCAAATGGGTCATTAAGAACTAGTATCAACCATTCATTAAACTTCTTTGTTAGCATTCTGAGTCGGATTGTTCTGGTTGTGCTTGGGATGGCTAAGTAATTTAGTCATTCCCTTATTGCTCTGGTCTTTCCTGATCCACAGATATGTTATCCTTGTTGCTGGAGGACACTGTTCCAGGCTTGTTCTTAATTACAACCCATTG

mRNA sequence

ATTTCGGTGAGGATTGGCTTAACAAAAGAACCCTACAGTATAAAAAGGGGCGAAGGAGACTCTAGGGTTTCATTTGCACACGGTGCGGCGGCGTCATCCAACCTAGCTTCGTCTTTGCCGGTTCCGGAGATCCTCAACTCACATTCACCATGGGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAAGCTCCTCAGTTTTCCAAGATAGATTATGTTGCTATTTCCTCCAATTATTCTCCCTGAAGCAGTTAATGAGCAATTGATGCACACTTTCCCTCTATCCCTAGTTAAGTTAGATTACTCGGTTGACTGATAGAAACTTGTGCACCCAACCTTTTTGTTGAGACATGATAAAGCATAACTTTCTTTGCGAACAGAACAGATTCTGTTATGGTTAATTTGAGTGTAATACATCATCCCCTTCCCTTTCCATCAAATGCCATAAGTTTTGTTCTAGAATGATTCTGTTGATTCTAGTGCGAGTCTCTAGCTTTCACACTAATATTTTCAATTATCAGTAAGGAATTGTAGTGCTTAAGAGCTGTGATGTGCTATAGATTCATCTTTTATTTACAGAGATTGTCAAATGGGTCATTAAGAACTAGTATCAACCATTCATTAAACTTCTTTGTTAGCATTCTGAGTCGGATTGTTCTGGTTGTGCTTGGGATGGCTAAGTAATTTAGTCATTCCCTTATTGCTCTGGTCTTTCCTGATCCACAGATATGTTATCCTTGTTGCTGGAGGACACTGTTCCAGGCTTGTTCTTAATTACAACCCATTG

Coding sequence (CDS)

ATGGGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAA

Protein sequence

MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*
Homology
[Close]
BLAST of MELO3C025738 vs. Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 7.6e-76
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.4e-75
Identity = 138/142 (97.18%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-73
Identity = 137/142 (96.48%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 134/142 (94.37%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-63
Identity = 116/143 (81.12%), Postives = 125/143 (87.41%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 60
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVSGVSLLALFKEKKEKPRS 143
           KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of MELO3C025738 vs. TrEMBL
Match: A0A0A0KCM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496500 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.4e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TrEMBL
Match: A0A0V0H0T5_SOLCH (Putative 40S ribosomal protein S23-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TrEMBL
Match: V4RTD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029532mg PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TrEMBL
Match: Q38HT5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TrEMBL
Match: A0A059A7I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TAIR10
Match: AT5G02960.1 (AT5G02960.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 275.8 bits (704), Expect = 1.5e-74
Identity = 137/142 (96.48%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TAIR10
Match: AT3G09680.1 (AT3G09680.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 266.9 bits (681), Expect = 7.0e-72
Identity = 134/142 (94.37%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738 vs. NCBI nr
Match: gi|449440067|ref|XP_004137806.1| (PREDICTED: 40S ribosomal protein S23 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. NCBI nr
Match: gi|568215572|ref|NP_001274976.1| (uncharacterized protein LOC102577739 [Solanum tuberosum])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. NCBI nr
Match: gi|661889986|emb|CDP06706.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 42  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 101

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 102 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 161

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 162 VVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of MELO3C025738 vs. NCBI nr
Match: gi|255565826|ref|XP_002523902.1| (PREDICTED: 40S ribosomal protein S23 isoform X2 [Ricinus communis])

HSP 1 Score: 286.6 bits (732), Expect = 2.4e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738 vs. NCBI nr
Match: gi|802539987|ref|XP_012073769.1| (PREDICTED: 40S ribosomal protein S23-like [Jatropha curcas])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKL+SHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

The following BLAST results are available for this feature:
BLAST of MELO3C025738 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS23_FRAAN7.6e-7697.8940S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1[more]
RS23_EUPES6.4e-7597.1840S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1[more]
RS232_ARATH2.7e-7396.4840S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2[more]
RS231_ARATH1.2e-7094.3740S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2[more]
RS23_LUMRU3.3e-6381.1240S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1[more]
BLAST of MELO3C025738 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCM2_CUCSA3.4e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496500 PE=3 SV=1[more]
A0A0V0H0T5_SOLCH7.6e-7599.30Putative 40S ribosomal protein S23-like OS=Solanum chacoense PE=3 SV=1[more]
V4RTD8_9ROSI7.6e-7599.30Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029532mg PE=3 SV=1[more]
Q38HT5_SOLTU7.6e-7599.30Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1[more]
A0A059A7I0_EUCGR7.6e-7599.30Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1[more]
BLAST of MELO3C025738 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02960.11.5e-7496.48 Ribosomal protein S12/S23 family protein[more]
AT3G09680.17.0e-7294.37 Ribosomal protein S12/S23 family protein[more]
ATCG00065.13.0e-0636.26ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.0e-0636.26ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.13.0e-0636.26ATCG00905.1 ribosomal protein S12C[more]
BLAST of MELO3C025738 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440067|ref|XP_004137806.1|4.9e-75100.00PREDICTED: 40S ribosomal protein S23 [Cucumis sativus][more]
gi|568215572|ref|NP_001274976.1|1.1e-7499.30uncharacterized protein LOC102577739 [Solanum tuberosum][more]
gi|661889986|emb|CDP06706.1|1.1e-7499.30unnamed protein product [Coffea canephora][more]
gi|255565826|ref|XP_002523902.1|2.4e-7499.30PREDICTED: 40S ribosomal protein S23 isoform X2 [Ricinus communis][more]
gi|802539987|ref|XP_012073769.1|3.2e-7498.59PREDICTED: 40S ribosomal protein S23-like [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46529melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025738T1MELO3C025738T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46529MU46529transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C025738Csa3G736840Cucumber (Chinese Long) v2cumeB181
MELO3C025738Csa6G289760Cucumber (Chinese Long) v2cumeB428
MELO3C025738Cla000541Watermelon (97103) v1mewmB107
MELO3C025738Cla017842Watermelon (97103) v1mewmB091
MELO3C025738ClCG10G020550Watermelon (Charleston Gray)mewcgB080
MELO3C025738ClCG02G020860Watermelon (Charleston Gray)mewcgB089
MELO3C025738Cla97C02G046900Watermelon (97103) v2mewmbB091
MELO3C025738Cla97C10G203750Watermelon (97103) v2mewmbB086
MELO3C025738Bhi11G001807Wax gourdmewgoB092
MELO3C025738Bhi10G000487Wax gourdmewgoB128
MELO3C025738CSPI06G16160Wild cucumber (PI 183967)cpimeB422
MELO3C025738CSPI03G32950Wild cucumber (PI 183967)cpimeB175
MELO3C025738Cucsa.052660Cucumber (Gy14) v1cgymeB034
MELO3C025738Cucsa.307150Cucumber (Gy14) v1cgymeB503
MELO3C025738CmaCh20G004640Cucurbita maxima (Rimu)cmameB489
MELO3C025738CmoCh06G003500Cucurbita moschata (Rifu)cmomeB739
MELO3C025738CmoCh20G004980Cucurbita moschata (Rifu)cmomeB481
MELO3C025738Lsi10G013040Bottle gourd (USVL1VR-Ls)lsimeB055
MELO3C025738Lsi03G020520Bottle gourd (USVL1VR-Ls)lsimeB241
MELO3C025738Cp4.1LG03g01850Cucurbita pepo (Zucchini)cpemeB553
MELO3C025738Cp4.1LG16g05540Cucurbita pepo (Zucchini)cpemeB256
MELO3C025738CsGy6G015680Cucumber (Gy14) v2cgybmeB370
MELO3C025738CsGy3G030710Cucumber (Gy14) v2cgybmeB150
MELO3C025738Carg01004Silver-seed gourdcarmeB0158
MELO3C025738Carg03263Silver-seed gourdcarmeB0340
MELO3C025738CsaV3_3G035560Cucumber (Chinese Long) v3cucmeB177
MELO3C025738CsaV3_6G021530Cucumber (Chinese Long) v3cucmeB434
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C025738MELO3C009315Melon (DHL92) v3.5.1memeB048
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025738Cucurbita maxima (Rimu)cmameB190
MELO3C025738Cucurbita maxima (Rimu)cmameB387
MELO3C025738Cucurbita maxima (Rimu)cmameB535
MELO3C025738Cucurbita moschata (Rifu)cmomeB177
MELO3C025738Cucurbita moschata (Rifu)cmomeB379
MELO3C025738Cucurbita moschata (Rifu)cmomeB525
MELO3C025738Wild cucumber (PI 183967)cpimeB010
MELO3C025738Cucumber (Chinese Long) v2cumeB012
MELO3C025738Watermelon (Charleston Gray)mewcgB117
MELO3C025738Watermelon (97103) v1mewmB095
MELO3C025738Cucurbita pepo (Zucchini)cpemeB668
MELO3C025738Bottle gourd (USVL1VR-Ls)lsimeB173
MELO3C025738Cucumber (Gy14) v2cgybmeB009
MELO3C025738Silver-seed gourdcarmeB0307
MELO3C025738Silver-seed gourdcarmeB0447
MELO3C025738Cucumber (Chinese Long) v3cucmeB009
MELO3C025738Watermelon (97103) v2mewmbB120
MELO3C025738Wax gourdmewgoB142
MELO3C025738Wax gourdmewgoB145