MELO3C025738T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C025738T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S12
Locationchr11 : 25603320 .. 25605552 (-)
Sequence length1176
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCGGTGAGGATTGGCTTAACAAAAGAACCCTACAGTATAAAAAGGGGCGAAGGAGACTCTAGGGTTTCATTTGCACACGGTGCGGCGGCGTCATCCAACCTAGCTTCGTCTTTGCCGGTTCCGGAGATCCTCAACTCACATTCACCATGGGGTATGTACTTTTTCCTTCTTCCTATTTTGTTCCCCTTATTTGTTTATAGTGATGAATCTTCTAGGGAAGGAAGTCCACAAGTAATCGAGATTTGAATGGCTTAATTGGATTCAACGCATTTGATAGATTGATAAATCAGTAGTTACTTTACAGGACGAGAATGGTTTGTATTAGCTTATCGTAGATGATTAAATATAATGAACGCCTTAGCAATTATTAAGAAGGATGGTGGACTCTCTTGTTGCTGTGTTGTCAATTCGAAATGTTTTGTGTTTTGTTATTGTCATTGGTTATTGCAAGGAGCGCGATCTCTTGATTAGTTTTGTTTGAGATAATGTCGATTTGTTTCGTTTCTCTCTCAAATTTATGTTTTGTTTTGTTACTATCGTTGCTAGATATCGGAGTAACACACTTTGTAGCTATTTATGGTTTTAGATATGAATATGCACTTAGATTTAATGTGAGCAAGTTGGTTTCTTTGATTCTAATATGATTTCACGTTTTTTTTTACAACGATGAGTGGATTTTGCTTGTTGTTTGACTGAAAAACAATTGAGATTGTTCACCATTCAACAAGTTGGCTATGCTCAGTACAAGGATTGTCGATGGTATTCGTATCCTTGTGATTTAGAGAAATACAATTGGTACGATTCTAGGATTTTTCTGGATCTCACAGGTTAACTGGGACGTTTGAGATGTGAATACTTTTCAAATGTTTTATTTTAGTTAATAGCCTTAAATCTAGAGGAAAATTTGATGAGGCTTTTAGGGAATTGGGAAAAAGGTTCATGTTTTTATGTTTTATGTTTTGGTGCAAATGGAAGTTGTATTCTCTTCGTTAAGTAGTAGTTATGTCTTACAGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATGTAAGATGATTTTATTTTATTTGTACTGTGCTTTTCTGGGGCTTACTTTGCAAAAACGTATTTAATATGTAATTTTCTGGTGCAACGTGCAGTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGTAAGTATTCAAGGGAAGCTTGGGATTTGATCATGGGAATTTTGGTTACTATTATCAAGATTGTTCTCTATTTTTTCAATAATATATGTATTGGCATCCCCAGGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAAGCTCCTCAGTTTTCCAAGATAGATTATGTTGCTATTTCCTCCAATTATTCTCCCTGAAGCAGTTAATGAGCAATTGATGCACACTTTCCCTCTATCCCTAGTTAAGTTAGATTACTCGGTTGACTGATAGAAACTTGTGCACCCAACCTTTTTGTTGAGACATGATAAAGCATAACTTTCTTTGCGAACAGAACAGATTCTGTTATGGTTAATTTGAGTGTAATACATCATCCCCTTCCCTTTCCATCAAATGCCATAAGTTTTGTTCTAGAATGATTCTGTTGATTCTAGTGCGAGTCTCTAGCTTTCACACTAATATTTTCAATTATCAGTAAGGAATTGTAGTGCTTAAGAGCTGTGATGTGCTATAGATTCATCTTTTATTTACAGAGATTGTCAAATGGGTCATTAAGAACTAGTATCAACCATTCATTAAACTTCTTTGTTAGCATTCTGAGTCGGATTGTTCTGGTTGTGCTTGGGATGGCTAAGTAATTTAGTCATTCCCTTATTGCTCTGGTCTTTCCTGATCCACAGATATGTTATCCTTGTTGCTGGAGGACACTGTTCCAGGCTTGTTCTTAATTACAACCCATTG

mRNA sequence

ATTTCGGTGAGGATTGGCTTAACAAAAGAACCCTACAGTATAAAAAGGGGCGAAGGAGACTCTAGGGTTTCATTTGCACACGGTGCGGCGGCGTCATCCAACCTAGCTTCGTCTTTGCCGGTTCCGGAGATCCTCAACTCACATTCACCATGGGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAAGCTCCTCAGTTTTCCAAGATAGATTATGTTGCTATTTCCTCCAATTATTCTCCCTGAAGCAGTTAATGAGCAATTGATGCACACTTTCCCTCTATCCCTAGTTAAGTTAGATTACTCGGTTGACTGATAGAAACTTGTGCACCCAACCTTTTTGTTGAGACATGATAAAGCATAACTTTCTTTGCGAACAGAACAGATTCTGTTATGGTTAATTTGAGTGTAATACATCATCCCCTTCCCTTTCCATCAAATGCCATAAGTTTTGTTCTAGAATGATTCTGTTGATTCTAGTGCGAGTCTCTAGCTTTCACACTAATATTTTCAATTATCAGTAAGGAATTGTAGTGCTTAAGAGCTGTGATGTGCTATAGATTCATCTTTTATTTACAGAGATTGTCAAATGGGTCATTAAGAACTAGTATCAACCATTCATTAAACTTCTTTGTTAGCATTCTGAGTCGGATTGTTCTGGTTGTGCTTGGGATGGCTAAGTAATTTAGTCATTCCCTTATTGCTCTGGTCTTTCCTGATCCACAGATATGTTATCCTTGTTGCTGGAGGACACTGTTCCAGGCTTGTTCTTAATTACAACCCATTG

Coding sequence (CDS)

ATGGGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGAAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAATTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTCGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTTGCTCTCTTCAAGGAAAAGAAGGAGAAGCCAAGATCTTAA

Protein sequence

MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*
Homology
[Close]
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 7.6e-76
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.4e-75
Identity = 138/142 (97.18%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 2.7e-73
Identity = 137/142 (96.48%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 134/142 (94.37%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-63
Identity = 116/143 (81.12%), Postives = 125/143 (87.41%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 60
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVSGVSLLALFKEKKEKPRS 143
           KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of MELO3C025738T1 vs. TrEMBL
Match: A0A0A0KCM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496500 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.4e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TrEMBL
Match: A0A0V0H0T5_SOLCH (Putative 40S ribosomal protein S23-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TrEMBL
Match: V4RTD8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029532mg PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TrEMBL
Match: Q38HT5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TrEMBL
Match: A0A059A7I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 7.6e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TAIR10
Match: AT5G02960.1 (AT5G02960.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 275.8 bits (704), Expect = 1.5e-74
Identity = 137/142 (96.48%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TAIR10
Match: AT3G09680.1 (AT3G09680.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 266.9 bits (681), Expect = 7.0e-72
Identity = 134/142 (94.37%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738T1 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738T1 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of MELO3C025738T1 vs. NCBI nr
Match: gi|449440067|ref|XP_004137806.1| (PREDICTED: 40S ribosomal protein S23 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 4.9e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. NCBI nr
Match: gi|568215572|ref|NP_001274976.1| (uncharacterized protein LOC102577739 [Solanum tuberosum])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. NCBI nr
Match: gi|661889986|emb|CDP06706.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 42  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 101

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 102 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 161

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 162 VVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of MELO3C025738T1 vs. NCBI nr
Match: gi|255565826|ref|XP_002523902.1| (PREDICTED: 40S ribosomal protein S23 isoform X2 [Ricinus communis])

HSP 1 Score: 286.6 bits (732), Expect = 2.4e-74
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of MELO3C025738T1 vs. NCBI nr
Match: gi|802539987|ref|XP_012073769.1| (PREDICTED: 40S ribosomal protein S23-like [Jatropha curcas])

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKL+SHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

The following BLAST results are available for this feature:
BLAST of MELO3C025738T1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS23_FRAAN7.6e-7697.8940S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1[more]
RS23_EUPES6.4e-7597.1840S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1[more]
RS232_ARATH2.7e-7396.4840S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2[more]
RS231_ARATH1.2e-7094.3740S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2[more]
RS23_LUMRU3.3e-6381.1240S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1[more]
BLAST of MELO3C025738T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCM2_CUCSA3.4e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G496500 PE=3 SV=1[more]
A0A0V0H0T5_SOLCH7.6e-7599.30Putative 40S ribosomal protein S23-like OS=Solanum chacoense PE=3 SV=1[more]
V4RTD8_9ROSI7.6e-7599.30Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029532mg PE=3 SV=1[more]
Q38HT5_SOLTU7.6e-7599.30Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1[more]
A0A059A7I0_EUCGR7.6e-7599.30Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1[more]
BLAST of MELO3C025738T1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02960.11.5e-7496.48 Ribosomal protein S12/S23 family protein[more]
AT3G09680.17.0e-7294.37 Ribosomal protein S12/S23 family protein[more]
ATCG00065.13.0e-0636.26ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.0e-0636.26ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.13.0e-0636.26ATCG00905.1 ribosomal protein S12C[more]
BLAST of MELO3C025738T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440067|ref|XP_004137806.1|4.9e-75100.00PREDICTED: 40S ribosomal protein S23 [Cucumis sativus][more]
gi|568215572|ref|NP_001274976.1|1.1e-7499.30uncharacterized protein LOC102577739 [Solanum tuberosum][more]
gi|661889986|emb|CDP06706.1|1.1e-7499.30unnamed protein product [Coffea canephora][more]
gi|255565826|ref|XP_002523902.1|2.4e-7499.30PREDICTED: 40S ribosomal protein S23 isoform X2 [Ricinus communis][more]
gi|802539987|ref|XP_012073769.1|3.2e-7498.59PREDICTED: 40S ribosomal protein S23-like [Jatropha curcas][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C025738MELO3C025738gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C025738T1MELO3C025738T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C025738T1.cds4MELO3C025738T1.cds4CDS
MELO3C025738T1.cds3MELO3C025738T1.cds3CDS
MELO3C025738T1.cds2MELO3C025738T1.cds2CDS
MELO3C025738T1.cds1MELO3C025738T1.cds1CDS