Cp4.1LG03g01850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g01850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S23
LocationCp4.1LG03 : 816231 .. 818155 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCCTTGAAGCTTAGTTAGGGTTTTGGTGCTGCTCCTCCATCTACAGTCGAAGAACCAGTTGTCTCTGCAAACATGGGGTAAGATAGTTCATTTGATCGTTTTGTGATTTCTACTTGCTTGGATCGGCTTTGAAAATGATTTACTTTCTTTACTGTCGTTTTTTTTTCCTACAATCACATCCGTTTTTAGTATGAATACATGGAGTATGGGACTAGAATTGATTTTTGTTACAATGAGTTGGATTATTTTTGGATGTTTAACCTATCTTGTATGAATATGGTCGAAGGAGTGAATGATTCTTAGGAGTTTTTGCACTTTTAGTTATAATGGATACTTGTTAGAATTTCATCTGATTTGCAATTACTAGTAGATTTTTTTTTGACGCGCAAGTATTTGAATGAGTTAAGAATTCTGTAATGGCGAGTAAAATCTATAGCCATTTGGAAAACTCCTGTCGAAGCGCGGGTTGTGGTTTTGGACCTGGTTTTGATCGATTGATGAATCCAACAGGAAGACACGAGGTATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAATCTTATAAGAAGTCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCCAAGGGCATTGTGTTGGAAAAGATGTAAGATCTCAAGCATACTTTTTGTTATCTTCAGAATTTTTTCAAAAGGGAGTTGCGAGCATACTCGGAAAATATAATGCATTTCATCTAAGTTGCCCTTTCTCATTCCTTACATTAGTTTTATTGTGTGATTTTGTCATAATAGATTCTATCCAAGCACTTCAGTCAGAGTCACCTGATTGATTTTGATGTTGGGAGCTCCTATTTCTCCCATTTGATAGTTAGATGTATTTTATTTATCATAGTCGATTCGACGACCCAACACGACAAGTGACTGTCACCCAACTTGATTTTAATCTTGGTAGTAACATCAGATGTTATTGAGTTCTTAGATGTAGTGTCCCGATTGATGTTTTCTGCTGGTTCTCTCTGAGACTCACTGACCTTTTTTTTTCCTTCCATTTATTCTCTTCACTCTAAATATTGGTCAGTTCATTCATACGTAATGTATATTGTTATGTAAACTGCTCTTTGAGTTTTGCTTTGCTATTTTTAAATGTTTGGTACCTAAATGAGCAATGGTAATCTGATTTCAGAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTAGAAAATGTGCCAGGGTCCAACTCATCAAGAACGGGAAAAAGATTGCTGCATTCGTACCCAACGATGGGTGCCTGAATTATATAGAAGAAAATGTAAGTCTGCACCCTCTCTCCCCCTTAAAAAAAGAGATGGGAAGCTTTGAAACTGATATGACAACTGTGATTGCAGGATGAAGTGTTGATTGCTGGATTTGGACGTAAAGGACATGCGGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTCTCTGGGGTGTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAAGTTTGCTTGGTAGAGCTTGTCAGCTTATTTCAGATCTTGATTATTCGTTGTTATGGACTATTATGTAGTTATTGGCTCCCTACTTGCAGTCTGATTTTTGACATCGTTTGGCTTTTTAGAATTCCTTCCATTTTGCTCTGAAATATTAATATATCAACACCCATGTCGAGCTTTAATTGAATTCATTCTGCATTGTCAGGCTACTTTGATTCCCAACATGATAATTGGTGTTCATGTTGGTAGTTTGATTCCCAAGCTAGTGAAGTAACTCTTCTAGGTAGATTTTGATTATTTTGACAGATTTAGATTGGATCAAGGGGAGATTTTGATTGAGCTGTTTTGACAACAAATACAATGTTCTTATGTTTGATCTTTGG

mRNA sequence

TATCCTTGAAGCTTAGTTAGGGTTTTGGTGCTGCTCCTCCATCTACAGTCGAAGAACCAGTTGTCTCTGCAAACATGGGGAAGACACGAGGTATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAATCTTATAAGAAGTCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCCAAGGGCATTGTGTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTAGAAAATGTGCCAGGGTCCAACTCATCAAGAACGGGAAAAAGATTGCTGCATTCGTACCCAACGATGGGTGCCTGAATTATATAGAAGAAAATGATGAAGTGTTGATTGCTGGATTTGGACGTAAAGGACATGCGGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTCTCTGGGGTGTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAAGTTTGCTTGGTAGAGCTTGTCAGCTTATTTCAGATCTTGATTATTCGTTGTTATGGACTATTATGTAGTTATTGGCTCCCTACTTGCAGTCTGATTTTTGACATCGTTTGGCTTTTTAGAATTCCTTCCATTTTGCTCTGAAATATTAATATATCAACACCCATGTCGAGCTTTAATTGAATTCATTCTGCATTGTCAGGCTACTTTGATTCCCAACATGATAATTGGTGTTCATGTTGGTAGTTTGATTCCCAAGCTAGTGAAGTAACTCTTCTAGGTAGATTTTGATTATTTTGACAGATTTAGATTGGATCAAGGGGAGATTTTGATTGAGCTGTTTTGACAACAAATACAATGTTCTTATGTTTGATCTTTGG

Coding sequence (CDS)

ATGGGGAAGACACGAGGTATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAATCTTATAAGAAGTCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGGTCTTCTCATGCCAAGGGCATTGTGTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTAGAAAATGTGCCAGGGTCCAACTCATCAAGAACGGGAAAAAGATTGCTGCATTCGTACCCAACGATGGGTGCCTGAATTATATAGAAGAAAATGATGAAGTGTTGATTGCTGGATTTGGACGTAAAGGACATGCGGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTCTCTGGGGTGTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAA

Protein sequence

MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Homology
[Close]
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.4e-74
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-73
Identity = 139/142 (97.89%), Postives = 139/142 (97.89%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 270.8 bits (691), Expect = 8.6e-72
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-69
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.1e-62
Identity = 116/143 (81.12%), Postives = 127/143 (88.81%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAK 60
           MGK RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAK
Sbjct: 1   MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60

Query: 61  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 120
           QPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120

Query: 121 KVVKVSGVSLLALFKEKKEKPRS 143
           KVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 121 KVVKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match: Q38HT5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match: A0A022RRU5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015865mg PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match: A0A068UE32_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023642001 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 42  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 101

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 102 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 161

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 162 VVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match: A0A059A7I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match: A0A165WUG8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014963 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match: AT5G02960.1 (AT5G02960.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 270.8 bits (691), Expect = 4.8e-73
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match: AT3G09680.1 (AT3G09680.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 261.9 bits (668), Expect = 2.2e-70
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match: ATCG00905.1 (ATCG00905.1 ribosomal protein S12C)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 

Query: 34  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 93
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 94  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 124
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match: gi|568215572|ref|NP_001274976.1| (uncharacterized protein LOC102577739 [Solanum tuberosum])

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match: gi|661889986|emb|CDP06706.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 42  MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 101

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 102 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 161

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 162 VVKVSGVSLLALFKEKKEKPRS 183

[Close]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match: gi|449440067|ref|XP_004137806.1| (PREDICTED: 40S ribosomal protein S23 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 4.6e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match: gi|976925642|gb|KVI09540.1| (Nucleic acid-binding, OB-fold [Cynara cardunculus var. scolymus])

HSP 1 Score: 281.6 bits (719), Expect = 7.8e-73
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match: gi|593687743|ref|XP_007144531.1| (hypothetical protein PHAVU_007G163700g [Phaseolus vulgaris])

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-72
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

Query: 1   MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGA RKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 48  MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 107

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 108 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 167

Query: 121 VVKVSGVSLLALFKEKKEKPRS 143
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 168 VVKVSGVSLLALFKEKKEKPRS 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g01850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS23_FRAAN1.4e-7498.5940S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1[more]
RS23_EUPES1.2e-7397.8940S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1[more]
RS232_ARATH8.6e-7296.4840S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2[more]
RS231_ARATH4.0e-6994.3740S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2[more]
RS23_LUMRU8.1e-6281.1240S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1[more]
BLAST of Cp4.1LG03g01850 vs. TrEMBL
Match NameE-valueIdentityDescription
Q38HT5_SOLTU1.4e-73100.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017593 PE=2 SV=1[more]
A0A022RRU5_ERYGU1.4e-73100.00Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015865mg PE=3 SV=1[more]
A0A068UE32_COFCA1.4e-73100.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023642001 PE=4 SV=1[more]
A0A059A7I0_EUCGR1.4e-73100.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03200 PE=3 SV=1[more]
A0A165WUG8_DAUCA1.4e-73100.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014963 PE=4 SV=1[more]
BLAST of Cp4.1LG03g01850 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02960.14.8e-7396.48 Ribosomal protein S12/S23 family protein[more]
AT3G09680.12.2e-7094.37 Ribosomal protein S12/S23 family protein[more]
ATCG00065.13.0e-0636.26ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.0e-0636.26ATCG01230.1 ribosomal protein S12B[more]
ATCG00905.13.0e-0636.26ATCG00905.1 ribosomal protein S12C[more]
BLAST of Cp4.1LG03g01850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|568215572|ref|NP_001274976.1|2.0e-73100.00uncharacterized protein LOC102577739 [Solanum tuberosum][more]
gi|661889986|emb|CDP06706.1|2.0e-73100.00unnamed protein product [Coffea canephora][more]
gi|449440067|ref|XP_004137806.1|4.6e-7399.30PREDICTED: 40S ribosomal protein S23 [Cucumis sativus][more]
gi|976925642|gb|KVI09540.1|7.8e-7399.30Nucleic acid-binding, OB-fold [Cynara cardunculus var. scolymus][more]
gi|593687743|ref|XP_007144531.1|1.0e-7299.30hypothetical protein PHAVU_007G163700g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006032Ribosomal_S12/S23
IPR005680Ribosomal_S23_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g01850.1Cp4.1LG03g01850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMsTIGR00982TIGR00982coord: 6..141
score: 5.0
IPR006032Ribosomal protein S12/S23PIRPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 16..142
score: 3.6
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..142
score: 2.4E
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 9..141
score: 5.8
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 59..66
scor
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 20..140
score: 5.9
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 20..140
score: 4.03
NoneNo IPR availablePANTHERPTHR11652:SF1640S RIBOSOMAL PROTEIN S23-1coord: 1..142
score: 2.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g01850Cucsa.307150Cucumber (Gy14) v1cgycpeB0801
Cp4.1LG03g01850CmaCh20G004640Cucurbita maxima (Rimu)cmacpeB571
Cp4.1LG03g01850CmaCh06G003560Cucurbita maxima (Rimu)cmacpeB830
Cp4.1LG03g01850CmoCh20G004980Cucurbita moschata (Rifu)cmocpeB522
Cp4.1LG03g01850CmoCh06G003500Cucurbita moschata (Rifu)cmocpeB783
Cp4.1LG03g01850Cla000541Watermelon (97103) v1cpewmB620
Cp4.1LG03g01850Cla017842Watermelon (97103) v1cpewmB597
Cp4.1LG03g01850Csa3G736840Cucumber (Chinese Long) v2cpecuB598
Cp4.1LG03g01850MELO3C025738Melon (DHL92) v3.5.1cpemeB553
Cp4.1LG03g01850MELO3C009315Melon (DHL92) v3.5.1cpemeB571
Cp4.1LG03g01850ClCG10G020550Watermelon (Charleston Gray)cpewcgB546
Cp4.1LG03g01850ClCG02G020860Watermelon (Charleston Gray)cpewcgB551
Cp4.1LG03g01850CSPI03G32950Wild cucumber (PI 183967)cpecpiB600
Cp4.1LG03g01850Lsi10G013040Bottle gourd (USVL1VR-Ls)cpelsiB487
Cp4.1LG03g01850MELO3C025738.2Melon (DHL92) v3.6.1cpemedB656
Cp4.1LG03g01850MELO3C009315.2Melon (DHL92) v3.6.1cpemedB678
Cp4.1LG03g01850CsaV3_3G035560Cucumber (Chinese Long) v3cpecucB0747
Cp4.1LG03g01850Bhi10G000487Wax gourdcpewgoB0807
Cp4.1LG03g01850Bhi11G001807Wax gourdcpewgoB0750
Cp4.1LG03g01850CsGy5G016690Cucumber (Gy14) v2cgybcpeB677
Cp4.1LG03g01850CsGy3G030710Cucumber (Gy14) v2cgybcpeB395
Cp4.1LG03g01850Carg12598Silver-seed gourdcarcpeB1391
Cp4.1LG03g01850Carg01004Silver-seed gourdcarcpeB0230
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g01850Cp4.1LG13g09860Cucurbita pepo (Zucchini)cpecpeB219
Cp4.1LG03g01850Cp4.1LG16g05540Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG03g01850Cp4.1LG08g11170Cucurbita pepo (Zucchini)cpecpeB487
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g01850Cucurbita pepo (Zucchini)cpecpeB092
Cp4.1LG03g01850Cucurbita pepo (Zucchini)cpecpeB416
Cp4.1LG03g01850Cucumber (Gy14) v1cgycpeB0100
Cp4.1LG03g01850Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g01850Cucurbita maxima (Rimu)cmacpeB883
Cp4.1LG03g01850Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g01850Cucurbita moschata (Rifu)cmocpeB588
Cp4.1LG03g01850Cucurbita moschata (Rifu)cmocpeB821
Cp4.1LG03g01850Bottle gourd (USVL1VR-Ls)cpelsiB491
Cp4.1LG03g01850Bottle gourd (USVL1VR-Ls)cpelsiB503
Cp4.1LG03g01850Watermelon (Charleston Gray)cpewcgB553
Cp4.1LG03g01850Watermelon (97103) v1cpewmB618
Cp4.1LG03g01850Melon (DHL92) v3.5.1cpemeB580
Cp4.1LG03g01850Cucumber (Gy14) v2cgybcpeB555
Cp4.1LG03g01850Melon (DHL92) v3.6.1cpemedB687
Cp4.1LG03g01850Silver-seed gourdcarcpeB0777
Cp4.1LG03g01850Cucumber (Chinese Long) v3cpecucB0770
Cp4.1LG03g01850Wax gourdcpewgoB0810