MELO3C025397 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025397
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein kinase family protein / ankyrin repeat family protein
Location	chr6 : 29539949 .. 29542065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGATACCGAGTGGATGGATAGAACCTCCAAGATTGCGAGAGCAAAAGCTCAGCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTCAAATTAGCTTCCCATTTTCTTGGTCTTCAGTCCAACCTTCGATGGCTCTCACCCCTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGGTTCTTTTACTAATTTCTCTCTTCTTTCTTTGTATTTTGCTTTGTGACTTTGATTGTTGAAGAGTGGTGTCTTTTGTTTAATTGCTGGTTTGGGCTGATTCTTATGGGTTTGGAGTTGAAATTGTTCTTACCCTCTGGCTGTTCTGTTTTCTTTTAAGTATTGTGAATTTTCAATGGCTCCTTTAGTGAAGATAGATGAAGAAATTTAAATTAGTAATTTTTCGTACCGATGACTCTCTTCCAGTGGTGTTAATGTCAAACTAACCTTTTCTTTACGTCATAAAGCACTTAATCGGTTGGAACTCAGTAGACGTCTCACTCATGTTTGTAGCCCTAACCTAATGCCATGGCAATCGAAATTTATATCGTATCCCTATTGCGATTATTAAACATCACCATAGGTGAGACATTCCTAACGTGATATACTGAGTTCTAGATGGTTAAGTGCTCTGACATTTCACATTAACGCCTCATCCGCACTGGTTAGTCGAAAGAAGAAGGTGTTTCTGTTATGAGATTGTGAGAAAGGACCTCCTTAAACATTATAACCAACCTCATAACTTGTGCATTTGTGTATCAAACTCTGCTTTCACATAAAGAAACTAAAACAAGGTATCACATTGCCGTTATGAAAAGTGCATAGAACTTCCTGCTTCCCTCAAACAAAACTTGCAAATATTACTGATTGGCCTTAGCCTTTAGGTAAGGGAAGAATCAAAAGTATTCCTTCATCCTTCTGCTTTAAAAATGTGCTAAATGACGTTGTCCATAGTTTAAAAACTCGACCAAATCGCATTTGTCTTACAGTCTCTCAACCCTTTTTAAGCACTCTCAGAGTCAATCCAAATAGATTCCTAGTTCCTAATATGTAACAAGAAGAGTGATACTATGAAAACCCACAAAAAACCCACAAACATGTGACTTGAGTTAAGATGACTCCCAATCCCACTGTATCAAGCTTTTCAAATAGAGGAATCACGATGAGATGAACAATAATATCCCAACGTGCTGCTATCCCAAATTAGATACAGAAGTCTACTTGTGGTGTTCTTAATCCAATAATTCATTATGAAATTCTTATATAATTTCTTAATGAGTATCTTAGAATTAATGTTACAACTTATCTCTTATTCTATATGATAGAATCTTAACATAAGTATTCATATTAAGAGCAAGATTATGTTGATACTTCTCGAATCATACCAAAAACTTGGAACCATGACATTAACTTCATTCGTGGAAACAAGTTTTGAAGGAAAAAGAAGGATTGACAAATGAACGTTATGGTTGTGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCAGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAGTTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACTTAACGAAGAAATTAAGGATTTTATTCTCAAATTTTCTGCTAAAAAGGCATGATTTTGGTTGGAAGTTGCTCTGTTTTGATAGGTTCTAGAAAGAGGTTGTTTAAGATTTGTATTTTCACTGCCTTCTGATGTTAATTATATTGTGTTAAATATAAGCCTGTCTTTATCAATTAGGGAATGGCTTCGAGATGTAAAATCTTGGTTATAGATGTTAGGTGTTTTGATGTTCTCGTTAACTTTAAAATGGTGTTTAATCTTTTAAAAGCGATGGAAATTGAATTATCAAGCGT

mRNA sequence

CCGGATACCGAGTGGATGGATAGAACCTCCAAGATTGCGAGAGCAAAAGCTCAGCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTCAAATTAGCTTCCCATTTTCTTGGTCTTCAGTCCAACCTTCGATGGCTCTCACCCCTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCAGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAGTTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACTTAACGAAGAAATTAAGGATTTTATTCTCAAATTTTCTGCTAAAAAGGCATGATTTTGGTTGGAAGTTGCTCTGTTTTGATAGGTTCTAGAAAGAGGTTGTTTAAGATTTGTATTTTCACTGCCTTCTGATGTTAATTATATTGTGTTAAATATAAGCCTGTCTTTATCAATTAGGGAATGGCTTCGAGATGTAAAATCTTGGTTATAGATGTTAGGTGTTTTGATGTTCTCGTTAACTTTAAAATGGTGTTTAATCTTTTAAAAGCGATGGAAATTGAATTATCAAGCGT

Coding sequence (CDS)

ATGGCTTCCCTCTCTTGTACTACCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTCAAATTAGCTTCCCATTTTCTTGGTCTTCAGTCCAACCTTCGATGGCTCTCACCCCTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCAGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAGTTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACTTAACGAAGAAATTAAGGATTTTATTCTCAAATTTTCTGCTAAAAAGGCATGA

Protein sequence

MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA*

Homology

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BLAST of MELO3C025397 vs. Swiss-Prot
Match: LTD_ARATH (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-55
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 3   SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L+S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of MELO3C025397 vs. Swiss-Prot
Match: LTD_ORYSI (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 106/175 (60.57%), Postives = 124/175 (70.86%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGP----SNGSRA--TC 60
           MAS+ CT  ++    S ++    + +       + L WL P  +      S   R   TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of MELO3C025397 vs. Swiss-Prot
Match: LTD_ORYSJ (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 106/175 (60.57%), Postives = 124/175 (70.86%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGP----SNGSRA--TC 60
           MAS+ CT  ++    S ++    + +       + L WL P  +      S   R   TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of MELO3C025397 vs. TrEMBL
Match: A0A0A0L309_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-87
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           EGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of MELO3C025397 vs. TrEMBL
Match: A0A0D2Q2S7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.7e-62
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+ CT  I  T +  NS P   KL+S FLG Q  L W  P  IGPSNGSR  CWF   
Sbjct: 1   MASIPCTFQIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++RA+NEEIKDFIL FS +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQKA 172

[Close]

BLAST of MELO3C025397 vs. TrEMBL
Match: U5GUL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.7e-61
Identity = 127/172 (73.84%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+  TT + L     +S+P   KL S FLGLQSN+ WL P  IGPSNGSRA CWF   
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DRA NEE KDFIL  S +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

[Close]

BLAST of MELO3C025397 vs. TrEMBL
Match: A0A0B0PFC4_GOSAR (Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.7e-61
Identity = 123/172 (71.51%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+ CT  I  + +  NS P   KL+S FLG Q  L W  P  IGPSNGSR  CWF   
Sbjct: 1   MASIPCTFQIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++RA+NEEI+DFIL FS +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQKA 172

[Close]

BLAST of MELO3C025397 vs. TrEMBL
Match: A9PCA3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.8e-60
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+  TT + L     +S+P   KL S FLGLQSN+ WL P  IGPSNGSRA CWF   
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEG GIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGDGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DRA NEE KDFIL  S +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

[Close]

BLAST of MELO3C025397 vs. TAIR10
Match: AT1G50900.1 (AT1G50900.1 Ankyrin repeat family protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-56
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 3   SLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L+S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of MELO3C025397 vs. NCBI nr
Match: gi|659126930|ref|XP_008463435.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 8.3e-90
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60
           MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of MELO3C025397 vs. NCBI nr
Match: gi|449470429|ref|XP_004152919.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           EGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of MELO3C025397 vs. NCBI nr
Match: gi|823131923|ref|XP_012460344.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii])

HSP 1 Score: 245.0 bits (624), Expect = 9.6e-62
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+ CT  I  T +  NS P   KL+S FLG Q  L W  P  IGPSNGSR  CWF   
Sbjct: 1   MASIPCTFQIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++RA+NEEIKDFIL FS +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQKA 172

[Close]

BLAST of MELO3C025397 vs. NCBI nr
Match: gi|566154888|ref|XP_006370666.1| (hypothetical protein POPTR_0001s44690g [Populus trichocarpa])

HSP 1 Score: 241.9 bits (616), Expect = 8.1e-61
Identity = 127/172 (73.84%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+  TT + L     +S+P   KL S FLGLQSN+ WL P  IGPSNGSRA CWF   
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DRA NEE KDFIL  S +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

[Close]

BLAST of MELO3C025397 vs. NCBI nr
Match: gi|728844189|gb|KHG23632.1| (lhcp translocation defect -like protein [Gossypium arboreum])

HSP 1 Score: 241.9 bits (616), Expect = 8.1e-61
Identity = 123/172 (71.51%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSFNSRPPF-KLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60
           MAS+ CT  I  + +  NS P   KL+S FLG Q  L W  P  IGPSNGSR  CWF   
Sbjct: 1   MASIPCTFQIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++RA+NEEI+DFIL FS +KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQKA 172

The following BLAST results are available for this feature:

BLAST of MELO3C025397 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTD_ARATH	3.9e-55	65.68	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1	[more]
LTD_ORYSI	3.0e-47	60.57	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1	[more]
LTD_ORYSJ	3.0e-47	60.57	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV...	[more]

BLAST of MELO3C025397 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309_CUCSA	1.2e-87	96.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1	[more]
A0A0D2Q2S7_GOSRA	6.7e-62	72.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1	[more]
U5GUL6_POPTR	5.7e-61	73.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1	[more]
A0A0B0PFC4_GOSAR	5.7e-61	71.51	Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 ...	[more]
A9PCA3_POPTR	2.8e-60	73.26	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of MELO3C025397 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50900.1	2.2e-56	65.68	Ankyrin repeat family protein	[more]

BLAST of MELO3C025397 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126930\|ref\|XP_008463435.1\|	8.3e-90	100.00	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]	[more]
gi\|449470429\|ref\|XP_004152919.1\|	1.7e-87	96.43	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]	[more]
gi\|823131923\|ref\|XP_012460344.1\|	9.6e-62	72.67	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii]	[more]
gi\|566154888\|ref\|XP_006370666.1\|	8.1e-61	73.84	hypothetical protein POPTR_0001s44690g [Populus trichocarpa]	[more]
gi\|728844189\|gb\|KHG23632.1\|	8.1e-61	71.51	lhcp translocation defect -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54046	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025397T1	MELO3C025397T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54046	MU54046	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 97..158 score: 1.
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 115..168 score: 10
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 90..160 score: 1.5
None	No IPR available	PANTHER	PTHR24151	FAMILY NOT NAMED	coord: 20..168 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025397	Csa3G078250	Cucumber (Chinese Long) v2	cumeB247
MELO3C025397	Cla005294	Watermelon (97103) v1	mewmB448
MELO3C025397	ClCG10G005560	Watermelon (Charleston Gray)	mewcgB412
MELO3C025397	Cla97C10G189790	Watermelon (97103) v2	mewmbB426
MELO3C025397	Bhi11G000502	Wax gourd	mewgoB499
MELO3C025397	CSPI03G05270	Wild cucumber (PI 183967)	cpimeB231
MELO3C025397	Cucsa.059810	Cucumber (Gy14) v1	cgymeB048
MELO3C025397	CmoCh16G009040	Cucurbita moschata (Rifu)	cmomeB283
MELO3C025397	Lsi05G006140	Bottle gourd (USVL1VR-Ls)	lsimeB370
MELO3C025397	Cp4.1LG00g00070	Cucurbita pepo (Zucchini)	cpemeB011
MELO3C025397	CsGy3G005350	Cucumber (Gy14) v2	cgybmeB201
MELO3C025397	Carg24815	Silver-seed gourd	carmeB0789
MELO3C025397	CsaV3_3G005280	Cucumber (Chinese Long) v3	cucmeB237

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025397	Cucurbita maxima (Rimu)	cmameB299
MELO3C025397	Cucurbita maxima (Rimu)	cmameB693
MELO3C025397	Cucurbita moschata (Rifu)	cmomeB684
MELO3C025397	Cucurbita pepo (Zucchini)	cpemeB413
MELO3C025397	Silver-seed gourd	carmeB0672