CmoCh16G009040 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCACAATCCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTGCCAGAGCAAAACCTCATCTTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGGTTCTTCTTTCTTCTTGTTCTGTGGATTTCTGTTTCTTGTTCTTCAGTTTCATTCCTGTTTTGGGGCTATTTCTGATGATTTGGAAGTTCAAATTGTTCTTTACACCTCCTGCGCTTCCATGTTCTTAATCCAAAATCTATTTCTGATGATTTTGGGGCTAGTTTTGATGTTCTTAATCCAATCAATCATTCATTAAAGCTAAGCTCAACTAGCTTATGGTAGTATGTCTTATACCTCTGAACTGAGCTTAACATCATTCCTAGAAACAAGTTTTAAAGGAAGAAACATTTTTGGTTGTGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGTAAGTGGCTCTGTTTTGGGATAGGCTTAGAAAGAGGTTTAAGCTTTGTATTTCACTGCCTTCTGATGTTAATCACAATATGGTACACTTGTTTTTGGAGTATTTTGAATGACTAGTAATGATCTTTGGCTTTCATTTTCTCTCAGAATGTTGATAAACATCATAGACAAGTTCAGAAAACAAG CCCACAATCCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTGCCAGAGCAAAACCTCATCTTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGTAAGTGGCTCTGTTTTGGGATAGGCTTAGAAAGAGGTTTAAGCTTTGTATTTCACTGCCTTCTGATGTTAATCACAATATGGTACACTTGTTTTTGGAGTATTTTGAATGACTAGTAATGATCTTTGGCTTTCATTTTCTCTCAGAATGTTGATAAACATCATAGACAAGTTCAGAAAACAAG ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA
BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ARATH (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 2.8e-53 Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 1
BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ORYSI (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45 Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1
BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ORYSJ (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45 Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0A0L309_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 9.3e-80 Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0D2Q2S7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60 Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0B0PFC4_GOSAR (Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 6.3e-60 Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TrEMBL
Match: U5GUL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59 Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TrEMBL
Match: V4TY14_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009689mg PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 5.3e-59 Identity = 122/172 (70.93%), Postives = 137/172 (79.65%), Query Frame = 1
BLAST of CmoCh16G009040 vs. TAIR10
Match: AT1G50900.1 (AT1G50900.1 Ankyrin repeat family protein) HSP 1 Score: 209.5 bits (532), Expect = 1.6e-54 Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 1
BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|449470429|ref|XP_004152919.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]) HSP 1 Score: 304.3 bits (778), Expect = 1.3e-79 Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 1
BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|659126930|ref|XP_008463435.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]) HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78 Identity = 150/168 (89.29%), Postives = 157/168 (93.45%), Query Frame = 1
BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|823131923|ref|XP_012460344.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii]) HSP 1 Score: 238.8 bits (608), Expect = 6.9e-60 Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|728844189|gb|KHG23632.1| (lhcp translocation defect -like protein [Gossypium arboreum]) HSP 1 Score: 238.4 bits (607), Expect = 9.0e-60 Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1
BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|566154888|ref|XP_006370666.1| (hypothetical protein POPTR_0001s44690g [Populus trichocarpa]) HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59 Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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