CmoCh16G009040 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G009040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lhcp translocation defect-like protein
Location	Cmo_Chr16 : 5402643 .. 5403758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACAATCCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTGCCAGAGCAAAACCTCATCTTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGGTTCTTCTTTCTTCTTGTTCTGTGGATTTCTGTTTCTTGTTCTTCAGTTTCATTCCTGTTTTGGGGCTATTTCTGATGATTTGGAAGTTCAAATTGTTCTTTACACCTCCTGCGCTTCCATGTTCTTAATCCAAAATCTATTTCTGATGATTTTGGGGCTAGTTTTGATGTTCTTAATCCAATCAATCATTCATTAAAGCTAAGCTCAACTAGCTTATGGTAGTATGTCTTATACCTCTGAACTGAGCTTAACATCATTCCTAGAAACAAGTTTTAAAGGAAGAAACATTTTTGGTTGTGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGTAAGTGGCTCTGTTTTGGGATAGGCTTAGAAAGAGGTTTAAGCTTTGTATTTCACTGCCTTCTGATGTTAATCACAATATGGTACACTTGTTTTTGGAGTATTTTGAATGACTAGTAATGATCTTTGGCTTTCATTTTCTCTCAGAATGTTGATAAACATCATAGACAAGTTCAGAAAACAAG

mRNA sequence

CCCACAATCCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTGCCAGAGCAAAACCTCATCTTCCTCTTACAAAACTTGCAAAAACTCAGCCATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGTAAGTGGCTCTGTTTTGGGATAGGCTTAGAAAGAGGTTTAAGCTTTGTATTTCACTGCCTTCTGATGTTAATCACAATATGGTACACTTGTTTTTGGAGTATTTTGAATGACTAGTAATGATCTTTGGCTTTCATTTTCTCTCAGAATGTTGATAAACATCATAGACAAGTTCAGAAAACAAG

Coding sequence (CDS)

ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA

Homology

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BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ARATH (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-53
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 1


Query: 3   SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN 62
           S SC + S+  S  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF   +N
Sbjct: 7   SFSC-APSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKN 66

Query: 63  ---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 122
              AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLA
Sbjct: 67  GVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLA 126

Query: 123 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           A+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Sbjct: 127 ATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQK 174

[Close]

BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ORYSI (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPI---AIGPSNGSRA---T 60
           MAS+ CT   ++   +S ++    +   +     + L W+ P    A+ P++ S     T
Sbjct: 1   MASIPCTF-QLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPT 60

Query: 61  CWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVD 120
           C+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVD
Sbjct: 61  CFFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVD 120

Query: 121 ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS 166
           ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Sbjct: 121 ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAAD-DTREFILGFA 167

[Close]

BLAST of CmoCh16G009040 vs. Swiss-Prot
Match: LTD_ORYSJ (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 105/172 (61.05%), Postives = 128/172 (74.42%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPI---AIGPSNGSRA---T 60
           MAS+ CT   ++   +S ++    +   +     + L W+ P    A+ P++ S     T
Sbjct: 1   MASIPCTF-QLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPT 60

Query: 61  CWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVD 120
           C+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVD
Sbjct: 61  CFFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVD 120

Query: 121 ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS 166
           ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Sbjct: 121 ILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAAD-DTREFILGFA 167

[Close]

BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0A0L309_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 9.3e-80
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167

[Close]

BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0D2Q2S7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+ CT   I  +   +NS P L KL S+FLG Q  L W  P  IGPSNGSR  CWF  
Sbjct: 1   MASIPCTF-QIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGAKYDVKD DGRTA++RA N+EIKDFIL FSV+K
Sbjct: 121 MLAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQK 171

[Close]

BLAST of CmoCh16G009040 vs. TrEMBL
Match: A0A0B0PFC4_GOSAR (Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.3e-60
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+ CT   I  S   +NS P L KL S+FLG Q  L W  P  IGPSNGSR  CWF  
Sbjct: 1   MASIPCTF-QIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGAKYDVKD DGRTA++RA N+EI+DFIL FSV+K
Sbjct: 121 MLAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQK 171

[Close]

BLAST of CmoCh16G009040 vs. TrEMBL
Match: U5GUL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+  T T + L+    +S+P L KL SQFLGLQSN+ W+ P  IGPSNGSRA CWF  
Sbjct: 1   MASILST-THLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ+RDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGA YD+KD DGRTA+DRA N+E KDFIL  SV K
Sbjct: 121 MLAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRK 170

[Close]

BLAST of CmoCh16G009040 vs. TrEMBL
Match: V4TY14_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009689mg PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.3e-59
Identity = 122/172 (70.93%), Postives = 137/172 (79.65%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+ C + SI+      NS+    K  SQFLG ++NL+   P  IGPSNGSRA CWF  
Sbjct: 1   MASIPCITASIHFVSKPSNSQSSCTKFSSQFLGTKNNLKCFRPSRIGPSNGSRAQCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AE AGIYGSQ RDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILL
Sbjct: 61  GKNGVDAENAGIYGSQKRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGA Y VKD DGRTA++RAP++EIKD ILNFSV+K
Sbjct: 121 MLAASEGDKPKIEELLRAGASYTVKDADGRTALERAPSEEIKDLILNFSVQK 172

[Close]

BLAST of CmoCh16G009040 vs. TAIR10
Match: AT1G50900.1 (AT1G50900.1 Ankyrin repeat family protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-54
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 1


Query: 3   SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN 62
           S SC + S+  S  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF   +N
Sbjct: 7   SFSC-APSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKN 66

Query: 63  ---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLA 122
              AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLA
Sbjct: 67  GVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLA 126

Query: 123 ASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           A+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Sbjct: 127 ATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQK 174

[Close]

BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|449470429|ref|XP_004152919.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-79
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167

[Close]

BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|659126930|ref|XP_008463435.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 150/168 (89.29%), Postives = 157/168 (93.45%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60
           MAS+SCT TSINL+P S NSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASLSCT-TSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Sbjct: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKK 167

[Close]

BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|823131923|ref|XP_012460344.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii])

HSP 1 Score: 238.8 bits (608), Expect = 6.9e-60
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+ CT   I  +   +NS P L KL S+FLG Q  L W  P  IGPSNGSR  CWF  
Sbjct: 1   MASIPCTF-QIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGAKYDVKD DGRTA++RA N+EIKDFIL FSV+K
Sbjct: 121 MLAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQK 171

[Close]

BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|728844189|gb|KHG23632.1| (lhcp translocation defect -like protein [Gossypium arboreum])

HSP 1 Score: 238.4 bits (607), Expect = 9.0e-60
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+ CT   I  S   +NS P L KL S+FLG Q  L W  P  IGPSNGSR  CWF  
Sbjct: 1   MASIPCTF-QIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGAKYDVKD DGRTA++RA N+EI+DFIL FSV+K
Sbjct: 121 MLAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQK 171

[Close]

BLAST of CmoCh16G009040 vs. NCBI nr
Match: gi|566154888|ref|XP_006370666.1| (hypothetical protein POPTR_0001s44690g [Populus trichocarpa])

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59
Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 1   MASVSCTSTSINLSPTSLNSRPPL-KLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL 60
           MAS+  T T + L+    +S+P L KL SQFLGLQSN+ W+ P  IGPSNGSRA CWF  
Sbjct: 1   MASILST-THLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKF 60

Query: 61  RQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 120
            +N   AEGAGIYGSQ+RDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILL
Sbjct: 61  GKNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILL 120

Query: 121 MLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 169
           MLAASEGDKPK+EELLRAGA YD+KD DGRTA+DRA N+E KDFIL  SV K
Sbjct: 121 MLAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRK 170

The following BLAST results are available for this feature:

BLAST of CmoCh16G009040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTD_ARATH	2.8e-53	65.09	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1	[more]
LTD_ORYSI	1.3e-45	61.05	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1	[more]
LTD_ORYSJ	1.3e-45	61.05	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV...	[more]

BLAST of CmoCh16G009040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309_CUCSA	9.3e-80	89.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1	[more]
A0A0D2Q2S7_GOSRA	4.8e-60	72.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1	[more]
A0A0B0PFC4_GOSAR	6.3e-60	72.67	Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 ...	[more]
U5GUL6_POPTR	1.1e-59	73.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1	[more]
V4TY14_9ROSI	5.3e-59	70.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009689mg PE=4 SV=1	[more]

BLAST of CmoCh16G009040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50900.1	1.6e-54	65.09	Ankyrin repeat family protein	[more]

BLAST of CmoCh16G009040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470429\|ref\|XP_004152919.1\|	1.3e-79	89.88	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]	[more]
gi\|659126930\|ref\|XP_008463435.1\|	3.3e-78	89.29	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]	[more]
gi\|823131923\|ref\|XP_012460344.1\|	6.9e-60	72.67	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii]	[more]
gi\|728844189\|gb\|KHG23632.1\|	9.0e-60	72.67	lhcp translocation defect -like protein [Gossypium arboreum]	[more]
gi\|566154888\|ref\|XP_006370666.1\|	1.5e-59	73.84	hypothetical protein POPTR_0001s44690g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009040.1	CmoCh16G009040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 114..156 score: 4.
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 116..152 score: 9
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 91..161 score: 5.6
None	No IPR available	PANTHER	PTHR24151	FAMILY NOT NAMED	coord: 21..168 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G009040	Cucsa.059810	Cucumber (Gy14) v1	cgycmoB0075
CmoCh16G009040	Cla005294	Watermelon (97103) v1	cmowmB289
CmoCh16G009040	Csa3G078250	Cucumber (Chinese Long) v2	cmocuB309
CmoCh16G009040	MELO3C025397	Melon (DHL92) v3.5.1	cmomeB283
CmoCh16G009040	ClCG10G005560	Watermelon (Charleston Gray)	cmowcgB274
CmoCh16G009040	CSPI03G05270	Wild cucumber (PI 183967)	cmocpiB317
CmoCh16G009040	Lsi05G006140	Bottle gourd (USVL1VR-Ls)	cmolsiB301
CmoCh16G009040	Cp4.1LG00g00070	Cucurbita pepo (Zucchini)	cmocpeB301
CmoCh16G009040	MELO3C025397.2	Melon (DHL92) v3.6.1	cmomedB322
CmoCh16G009040	CsaV3_3G005280	Cucumber (Chinese Long) v3	cmocucB0372
CmoCh16G009040	Cla97C10G189790	Watermelon (97103) v2	cmowmbB317
CmoCh16G009040	Bhi11G000502	Wax gourd	cmowgoB0406
CmoCh16G009040	CsGy3G005350	Cucumber (Gy14) v2	cgybcmoB303
CmoCh16G009040	Carg24815	Silver-seed gourd	carcmoB1069

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G009040	Silver-seed gourd	carcmoB0921
CmoCh16G009040	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G009040	Cucurbita moschata (Rifu)	cmocmoB290
CmoCh16G009040	Cucurbita maxima (Rimu)	cmacmoB324
CmoCh16G009040	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G009040	Cucurbita maxima (Rimu)	cmacmoB704
CmoCh16G009040	Melon (DHL92) v3.5.1	cmomeB293
CmoCh16G009040	Cucurbita pepo (Zucchini)	cmocpeB317
CmoCh16G009040	Bottle gourd (USVL1VR-Ls)	cmolsiB306