ClCG10G005560 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G005560
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein LHCP TRANSLOCATION DEFECT
Location	CG_Chr10 : 6875123 .. 6877129 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGGTTCTTTTACTGATTACTCCCTTCTTTCTTTGGATTTTGTGGCTTTCTTGTTATTGTCTTTGGGGACTGTGATTGTTTAAGAGCAGGTGTTTTTTGTTTCATTGCTGGTTTGGGGCTGATTCTTATGATTTTGGAAGTTGAAATTGTTCTTACCCTCTTGCTGTTTTTGTTTTCTTTTAGAAGTTTTGTGAATTCGTAAAGGCTCCTTAGTGAAGGAGTGAAGCTAGATGAATGGACTTAAATTGGGAGGCTTTTGTATGGATGACCTTTCTTAGCAGGGTTAATGGTTTTATGAAAATTAACCTTTTGCTTAGTCATAGAGCATGTTCTAGGCGACTAGGTGCTATATGACGTAAGTAAAAGATTAGTTTTTATTGGTTTTTGTAGGAGGGGGTCATTCTGCATTAACGTTGTTGGTTCAAGGCAATTTGTACAAAAATCTCTTTAAATTGGTTAGTCAAAATAAGAAACGCTTTGTGATATGAGATTGTGAGAAGGGCACCTTAAACGTTATAACCAACCTCATAACTTAGTGCATTTGTGTAACAAACTCTGCTCTCACATTAGGAAACTAAAACAAGGTGTTCCATTGCCACTATGAAAAGTGCATAGAACTTCCTACTTCCCTCAAACAAAACTTAGCAAACATTACTGATTTGCTGTAGCCTTTAGGTTAAGGGGAGAATCAAAAGTATTCCTTCATCCTTCTGCTCTTTTGCTTTGCAAATGTGCTGAATCACCTTGTCCATAGTTTAAAGACTCGAGCAAGCCACGTTTTCCTTACGGCCTCTCAGCACTTTTTTTAAGCATTCACAAAGTCCATCCAGACAGACTCCTAGTATGTAACAAGAAGAGAGAAATACACCATACGAACAATGAAAACCATTAAACATAATAGCTTGATTTGACTCATTGCATTAGTCATGACTTGAGATTTAAGATGACTCCCAATTGTATCAAGCTTCTCAAAGAGATGAATCATGATGAACAATAATATTCCAACATGTTCCTATCCCAAATTAGGTACAGAAGAAGTCTACTTTTAGTGTTCTTAGTCCAATGCCAATCATTCATCTCAACTAGTCTATGATAGCATGTCTTATATAATTAGTTAATGAGTATCATGGCATTAAAGTGACAACTTGGCACATATTCTATAAGATAGAATCTTAATCTAAGTACCCAAATTAAAAGTGAGATTATGTCGACACTTTTCGAGTCAATTGTGGATACCAAAAACTCTGAACCATGAGATTAACATCATTCCTAGAAACAAATTTTAAAGGAAAGTGAACATTTTGGTTGTGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTAATCATATTGTATTTAAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGTTTATAG

mRNA sequence

CACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTAATCATATTGTATTTAAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGTTTATAG

Coding sequence (CDS)

ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTAAATTCTCGCCCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGCACATATGACAAAATGGAGGCTCTGTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGGGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Protein sequence

MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Homology

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BLAST of ClCG10G005560 vs. Swiss-Prot
Match: LTD_ARATH (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-56
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 3   SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of ClCG10G005560 vs. Swiss-Prot
Match: LTD_ORYSJ (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 105/175 (60.00%), Postives = 125/175 (71.43%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPV---AIGPSNGSRA---TC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of ClCG10G005560 vs. Swiss-Prot
Match: LTD_ORYSI (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-47
Identity = 105/175 (60.00%), Postives = 125/175 (71.43%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPV---AIGPSNGSRA---TC 60
           MAS+ CT  ++    S ++    +         + L W+ P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of ClCG10G005560 vs. TrEMBL
Match: A0A0A0L309_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-84
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of ClCG10G005560 vs. TrEMBL
Match: A0A0D2Q2S7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-63
Identity = 127/172 (73.84%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+ CT  I  T + +NS P L KL S FLG Q +L W  P  IGPSNGSR  CWF F 
Sbjct: 1   MASIPCTFQIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++R  NEEIKDFIL FSV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQKA 172

[Close]

BLAST of ClCG10G005560 vs. TrEMBL
Match: A0A0B0PFC4_GOSAR (Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.0e-62
Identity = 125/172 (72.67%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+ CT  I  + + +NS P L KL S FLG Q +L W  P  IGPSNGSR  CWF F 
Sbjct: 1   MASIPCTFQIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++R  NEEI+DFIL FSV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQKA 172

[Close]

BLAST of ClCG10G005560 vs. TrEMBL
Match: U5GUL6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 127/172 (73.84%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+  TT + L     +S+P L KL S FLGLQS++ W+ P  IGPSNGSRA CWF F 
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DR  NEE KDFIL  SV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

[Close]

BLAST of ClCG10G005560 vs. TrEMBL
Match: A9PCA3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.6e-61
Identity = 126/172 (73.26%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+  TT + L     +S+P L KL S FLGLQS++ W+ P  IGPSNGSRA CWF F 
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEG GIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGDGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DR  NEE KDFIL  SV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

[Close]

BLAST of ClCG10G005560 vs. TAIR10
Match: AT1G50900.1 (AT1G50900.1 Ankyrin repeat family protein)

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-57
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 1


Query: 3   SLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           +EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of ClCG10G005560 vs. NCBI nr
Match: gi|449470429|ref|XP_004152919.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-84
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCT+SINLTPRS NSRPP KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of ClCG10G005560 vs. NCBI nr
Match: gi|659126930|ref|XP_008463435.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFRQ 60
           MASLSCTTSINLTPRS NSRPP KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of ClCG10G005560 vs. NCBI nr
Match: gi|823131923|ref|XP_012460344.1| (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii])

HSP 1 Score: 249.2 bits (635), Expect = 5.1e-63
Identity = 127/172 (73.84%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+ CT  I  T + +NS P L KL S FLG Q +L W  P  IGPSNGSR  CWF F 
Sbjct: 1   MASIPCTFQIPFTSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++R  NEEIKDFIL FSV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIKDFILGFSVQKA 172

[Close]

BLAST of ClCG10G005560 vs. NCBI nr
Match: gi|728844189|gb|KHG23632.1| (lhcp translocation defect -like protein [Gossypium arboreum])

HSP 1 Score: 246.1 bits (627), Expect = 4.3e-62
Identity = 125/172 (72.67%), Postives = 140/172 (81.40%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+ CT  I  + + +NS P L KL S FLG Q +L W  P  IGPSNGSR  CWF F 
Sbjct: 1   MASIPCTFQIPCSSKPVNSLPSLPKLSSKFLGSQKTLSWSRPSRIGPSNGSRTQCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG+YDKMEALL+Q+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGSYDKMEALLNQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YDVKD DGRTA++R  NEEI+DFIL FSV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAKYDVKDADGRTALERAVNEEIRDFILGFSVQKA 172

[Close]

BLAST of ClCG10G005560 vs. NCBI nr
Match: gi|566154888|ref|XP_006370666.1| (hypothetical protein POPTR_0001s44690g [Populus trichocarpa])

HSP 1 Score: 244.2 bits (622), Expect = 1.6e-61
Identity = 127/172 (73.84%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MASLSCTTSINLTPRSLNSRPPL-KLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNFR 60
           MAS+  TT + L     +S+P L KL S FLGLQS++ W+ P  IGPSNGSRA CWF F 
Sbjct: 1   MASILSTTHLTLASNPQSSQPFLPKLNSQFLGLQSNVGWLRPCRIGPSNGSRAKCWFKFG 60

Query: 61  QN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 120
           +N   AEGAGIYGSQ+RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALLSQ+IHPVDILLM
Sbjct: 61  KNGVDAEGAGIYGSQTRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLM 120

Query: 121 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA 169
           LAASEGDKPK+EELLRAGA YD+KD DGRTA+DR  NEE KDFIL  SV+KA
Sbjct: 121 LAASEGDKPKIEELLRAGAVYDIKDADGRTALDRA-NEETKDFILGLSVRKA 171

The following BLAST results are available for this feature:

BLAST of ClCG10G005560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTD_ARATH	2.7e-56	65.68	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1	[more]
LTD_ORYSJ	3.0e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica GN=LTD PE=2 SV...	[more]
LTD_ORYSI	3.0e-47	60.00	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica GN=LTD PE=3 SV=1	[more]

BLAST of ClCG10G005560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309_CUCSA	1.2e-84	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078250 PE=4 SV=1	[more]
A0A0D2Q2S7_GOSRA	3.5e-63	73.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G085700 PE=4 SV=1	[more]
A0A0B0PFC4_GOSAR	3.0e-62	72.67	Lhcp translocation defect-like protein OS=Gossypium arboreum GN=F383_07260 PE=4 ...	[more]
U5GUL6_POPTR	1.1e-61	73.84	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44690g PE=4 SV=1	[more]
A9PCA3_POPTR	5.6e-61	73.26	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of ClCG10G005560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50900.1	1.5e-57	65.68	Ankyrin repeat family protein	[more]

BLAST of ClCG10G005560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470429\|ref\|XP_004152919.1\|	1.8e-84	92.86	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]	[more]
gi\|659126930\|ref\|XP_008463435.1\|	3.4e-83	92.26	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]	[more]
gi\|823131923\|ref\|XP_012460344.1\|	5.1e-63	73.84	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Gossypium raimondii]	[more]
gi\|728844189\|gb\|KHG23632.1\|	4.3e-62	72.67	lhcp translocation defect -like protein [Gossypium arboreum]	[more]
gi\|566154888\|ref\|XP_006370666.1\|	1.6e-61	73.84	hypothetical protein POPTR_0001s44690g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0008150	biological_process
biological_process	GO:0006810	transport
biological_process	GO:0080167	response to karrikin
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G005560.1	ClCG10G005560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 98..151 score: 5.
IPR020683	Ankyrin repeat-containing domain	PROFILE	PS50297	ANK_REP_REGION	coord: 115..148 score: 9
IPR020683	Ankyrin repeat-containing domain	unknown	SSF48403	Ankyrin repeat	coord: 90..159 score: 7.3
None	No IPR available	PANTHER	PTHR24151	FAMILY NOT NAMED	coord: 20..168 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G005560	Csa3G078250	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G005560	MELO3C025397	Melon (DHL92) v3.5.1	mewcgB412
ClCG10G005560	Cla005294	Watermelon (97103) v1	wcgwmB052
ClCG10G005560	Cla97C10G189790	Watermelon (97103) v2	wcgwmbB038
ClCG10G005560	Bhi11G000502	Wax gourd	wcgwgoB080
ClCG10G005560	CSPI03G05270	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G005560	Cucsa.059810	Cucumber (Gy14) v1	cgywcgB049
ClCG10G005560	CmoCh16G009040	Cucurbita moschata (Rifu)	cmowcgB274
ClCG10G005560	Lsi05G006140	Bottle gourd (USVL1VR-Ls)	lsiwcgB318
ClCG10G005560	Cp4.1LG00g00070	Cucurbita pepo (Zucchini)	cpewcgB001
ClCG10G005560	CsGy3G005350	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G005560	MELO3C025397.2	Melon (DHL92) v3.6.1	medwcgB403
ClCG10G005560	Carg24815	Silver-seed gourd	carwcgB0766
ClCG10G005560	CsaV3_3G005280	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G005560	Silver-seed gourd	carwcgB0641
ClCG10G005560	Silver-seed gourd	carwcgB0881
ClCG10G005560	Watermelon (Charleston Gray)	wcgwcgB053
ClCG10G005560	Cucurbita maxima (Rimu)	cmawcgB013
ClCG10G005560	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G005560	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G005560	Cucurbita moschata (Rifu)	cmowcgB006
ClCG10G005560	Cucurbita moschata (Rifu)	cmowcgB615
ClCG10G005560	Cucurbita pepo (Zucchini)	cpewcgB349
ClCG10G005560	Cucurbita pepo (Zucchini)	cpewcgB692