MELO3C025230 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025230
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionThioredoxin
Locationchr8 : 26006973 .. 26011019 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCTTTCATTTTTACCACACCCAACGCGCCTTTGAACTCGAAGAAAAGTCAAAAAGTCCAAAATCTAGGGCAAATTCCATTTTCCGATTCCAAAATTCATAAATACAATTTGGGTTATTGCCAAAATTTTCCATTTTCCCTGTTTTCCGATCGTCATCGTGAACCTACTGTTTCTGGGGTTCAGTTCCCTCGTCTTATCCCCCTCCGATTTCACCATTTTTCGATTGCTTTCCTTCAAAATCAATATCCGGAACAATTTTCTTCCGCAAAACCGCGTGGGTTTTTTTTTTACTCCACAATTTATTGATGCCATCACCCCTCCACCGGCTACTGGATTGACTCGAGACTCCAATTCGGGGGTTCTTGAGGGTAATTTTCTGTTTCTTTGATCCGATTCTTCTCTACTCGGTTTTAATTATTCTTCATTAGTTTGTTTATGAATAGTATTCAGATGGGTTGCTGGGTCTTCTTTGATTCTATATTGTTGTCTGTCTATTTTGGGATGTCGAATTGGGGGAAAGTTGAGAAGTCTTTTTACCCATGATTTTATTCTGCTGCAGTTCCCTTTTTCTTTACTTAGGGAATCGTATTTCATTGCTTTACTATTGGTCTAAAGTAAGTTTGAATGATATGGTCATCGGTCCTTATCTATTTGTTAGTTGATTTACGAACCCAGAATTTGACAGGAGTGAGGTCCTTGCGGTTTGTTAGCGTTTTAACTTTTTAAGGTTATTATGTCACTGACAAAATTAGAGCTAGTCTTTTTTTGATGTCTCTTTCACAGAATTTATAACATATCTGTGAATATGAAATATCTAGAATAGACAAGGAGTTAAATGTCATGTTCTCTTCCCTTGACAACATATATTTTTTTCTTTTTTCAGGCTAACTTGTGATACGTAGAACACTTCAAAAATCTGTACTTGGACCTTCAAATGGGACTTTGCTTTAGTAAGGTAAGAGTCGGATAGCACTGTTAATCGGCACTGTTAATCTAGTGATGTTAGTTGAGTTGTGTTTGGTGGTTTGTGATGTTCGTGTTGTGTTGGTATCTGTACATGGAACTTCTTTTAAGCAATTGTGAAGCCTTAACAGAGTGTATCAAGAGTAATATGGAAGTTGTGAATTTGACATTGATGAAAGATGATTAAGGGGGAATGATTAATTGTCGACTATAAATGAACAGGCTAAAGAATTTGGCTAGGGCTTGGCTTTGTGGGGATCAGAAGAGGACTAGATATATTTGCTTGTCCTGTTAATTTGAATATTTGGTTTGTAAATTAGATTTGTTAATTTTCAATCTATTTAAAACAGTATTTGTATTGGGTAATAATATTCTGAAGGTTTTTCTTGGGTGCTGTAAAAATAAAGCCGTTACTTTTATTATCACCTCAATTATGTATGGATATTGGTGAAGGTGGTGCTTTATCATCATTAGCATTACACCAAAGGTTATCATTTATTGAATATTTGGCAGGAAATGTATAACTGCAGAAAATGCTATTTATATATGATTCAAGTCCTGACTTGATGGCTTCAGAAATTCCTCCAAATTTTTTTATTCTACCTGAGTTTGATCAGATTATCAGCATCTACTCTTTTTTTACCCTCTCTCCTTTTTATGTAATTTTTTTTATGATCCTATAAAATAAACCAGTTGTTGGAAAACTTGGCGGTAATTGTATTAGCTGTTATATAAATATTTGAAAGGGAAGAAAAAAAAAAATGTCTCTTTTCTGACATTTTGGTTTGCTGCTTGTTTTATGTGATTCTTAACAGTCATCTAACTGGGGTGTTATTATGTTCCCTGTTTCTAGTCCGAAACCAGAGACGATGACTCTGAGCATCATGTTGAGTTTGCTGCTGGAAATGTCCATCTAATCACAACCAAAGAATCTTGGGACCAAAAGTTGGAAGAAGCTAATACTAGCGGCAAAATTGTAAGATTAATAGTTTAGATTATTGAGTTATATGTTGGCAGTGCTTTATTTAATTTGTTTGGTCAACTGAGCAAATTAAAGAGAAAAAATCAATTGGAGAAAATTGAAATATTCAGTTGCTGTGCTATGTAGTCGCTGAAACTTTAAGGCCTGCTGTTGTTTCTAGATTAGTTCAAAGATTAATTAGGCCTGTTTTTCAGAAACCAAAGTAGTAGGAGAAAGAAACTCTTGCGCTTATGCAGTTATGTAGATGCCTATTTTGCTTTCCTCATAATTTTAAGGAATGCCATTGTTCTTGCTTCATGAACTTTGTTCATAATCATTCTTTGTTTTCCAAGTATTTGATGTCCGAGTGTTGGATAATGCTTTATTTGGTAGAAACTTCAGATAGTTGATTTAAATAGTTAAATAAGCCTTCGACGAAGGAGAGTCGGATGGTATGGTGTTGGCTTCATGGATTAAGGTTTGAGCTGGAGAAATACAGTTATAAAAACAAAACACTTGGACCTGTTACTGCAGTGCCCACCGATATTGGAATCATTTAAGACCTTTTTCTTTTTATTTGCATTTCATTTGGGTAACGAGAATCCTCAAAGACCTATGTGCATTGATATTTCCATCTTGATCATGAAATTAACTAAGGAGGGAATCAATAGCTTCCTTTTAGTATGTAGTCTATGATTCTATCTTAAAATTTGTTTTATAATTTTAGTACTCATGAGAAAATACTAATTTTACATTTTTAATTGTTCGACAAAATTGGAATGATATAAATAATTTAATAAATAGTTTGCTTTGTGTCATGCCTTTATTTTTTTGCTCAGTTCTATCATCTATGTAAGGGAGGCTGCCATGATTCTCTCTAGCTTTTGGTAATGAATATCTTTTGTCAAAATTCTAACACAATCGTACCTGCATGTGTTCCTTAACCCACTTTCAGCATTTTCATTTCATATGCCATGGGTTTAATCCTATCATAATTGAGATTATGGATCTGACAGGTGATAGCGAACTTCAGTGCAACTTGGTGTGGTCCTTGCAAGGTGGTTGCTCCATTCTACAGTGAATTGTCAGAGAAATACGAGTCTTTGATGTTCCTAGTAGTTGATGTTGATGAATTAACTGTGAGTAGTGAATTACAATATCATTTGACTTTGTTAACTCTTTTTGCTCATTCATCTAAACTCTTTTTAGACGTTGAACTGAAATTATCTTTGATATTCAATTGATGATATTACATTTTGTGGGGTGGGAGTTCAGGCATTTATGATATAGAAATGGTAGAGCAAGGTGGTCTGATAATATTTGTTCTTTTATGTTTGGAATGCCACATTCCTTGTCAATCCGTCCACAGCTCGATGGACAAGACACTCGCTACCTCTGCCATTGTACTAAAAGAAAAGGGAAAAGAGAAAGAAATTCCATGGTCCTTGCTATGAATTTAGCACTAAGCTAAGACTAGGATGACACAAAGGTCGAAGCATTTCATGTTCGATAAGTGTATTCTGTTGTTATGGAATGCCTTCTTAGAACTTTACTGAATTGGAGCTTGTCTATGCTTCTCATTTTGATATAATTCAATGCCCTTCCACATCACTTCATCATTAGATGTGTCATTAAGATGATAATTATATATGTTTGTTATAGGTTCGTTCTTTTTTGGTCTACAACATTTATCAGCATGCTTTGGTGTTTTTACAGGACTTCAGCACTTCTTGGGATATCAAAGCTACACCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTTGTCGGAGCGAATAAAATCGAACTAGAGAAGAAAATTATTGCAGTGGCAGATTCTCTCCCCCCTAATCGGATATGACTTCGGGTAAATACCATTTTAAAGTCCTTGAGTGTCTTCCCTGTATCATGAATGTATGATGTTGTTTCTTTGTATAATGCCTCTCTTTTAAGTGTAGACTATTAGTAATATTTATTTTTAATTATTGTGACTTCTTAGAAGCTTTCAAGTGCAAGAAAAAGAAATATATGAATGAAGCATGTGGGTTTTTTCCACAACGTTATAGGTTGTTATTATCTCATTCTTAATTTTAATAAGTATGTAAGTTTTTT

mRNA sequence

AAAGCTTTCATTTTTACCACACCCAACGCGCCTTTGAACTCGAAGAAAAGTCAAAAAGTCCAAAATCTAGGGCAAATTCCATTTTCCGATTCCAAAATTCATAAATACAATTTGGGTTATTGCCAAAATTTTCCATTTTCCCTGTTTTCCGATCGTCATCGTGAACCTACTGTTTCTGGGGTTCAGTTCCCTCGTCTTATCCCCCTCCGATTTCACCATTTTTCGATTGCTTTCCTTCAAAATCAATATCCGGAACAATTTTCTTCCGCAAAACCGCGTGGGTTTTTTTTTTACTCCACAATTTATTGATGCCATCACCCCTCCACCGGCTACTGGATTGACTCGAGACTCCAATTCGGGGGTTCTTGAGGGCTAACTTGTGATACGTAGAACACTTCAAAAATCTGTACTTGGACCTTCAAATGGGACTTTGCTTTAGTAAGTCCGAAACCAGAGACGATGACTCTGAGCATCATGTTGAGTTTGCTGCTGGAAATGTCCATCTAATCACAACCAAAGAATCTTGGGACCAAAAGTTGGAAGAAGCTAATACTAGCGGCAAAATTGTGATAGCGAACTTCAGTGCAACTTGGTGTGGTCCTTGCAAGGTGGTTGCTCCATTCTACAGTGAATTGTCAGAGAAATACGAGTCTTTGATGTTCCTAGTAGTTGATGTTGATGAATTAACTGACTTCAGCACTTCTTGGGATATCAAAGCTACACCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTTGTCGGAGCGAATAAAATCGAACTAGAGAAGAAAATTATTGCAGTGGCAGATTCTCTCCCCCCTAATCGGATATGACTTCGGGTAAATACCATTTTAAAGTCCTTGAGTGTCTTCCCTGTATCATGAATGTATGATGTTGTTTCTTTGTATAATGCCTCTCTTTTAAGTGTAGACTATTAGTAATATTTATTTTTAATTATTGTGACTTCTTAGAAGCTTTCAAGTGCAAGAAAAAGAAATATATGAATGAAGCATGTGGGTTTTTTCCACAACGTTATAGGTTGTTATTATCTCATTCTTAATTTTAATAAGTATGTAAGTTTTTT

Coding sequence (CDS)

ATGGGACTTTGCTTTAGTAAGTCCGAAACCAGAGACGATGACTCTGAGCATCATGTTGAGTTTGCTGCTGGAAATGTCCATCTAATCACAACCAAAGAATCTTGGGACCAAAAGTTGGAAGAAGCTAATACTAGCGGCAAAATTGTGATAGCGAACTTCAGTGCAACTTGGTGTGGTCCTTGCAAGGTGGTTGCTCCATTCTACAGTGAATTGTCAGAGAAATACGAGTCTTTGATGTTCCTAGTAGTTGATGTTGATGAATTAACTGACTTCAGCACTTCTTGGGATATCAAAGCTACACCTACCTTTTTCTTCCTCAAAGAAGGACAGCAAATCGACAAGCTTGTCGGAGCGAATAAAATCGAACTAGAGAAGAAAATTATTGCAGTGGCAGATTCTCTCCCCCCTAATCGGATATGA
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007154 cell communication
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0006457 protein folding
biological_process GO:0000103 sulfate assimilation
cellular_component GO:0005623 cell
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009536 plastid
cellular_component GO:0005575 cellular_component
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46685melon EST collection version 4.0transcribed_cluster
MU65116melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025230T3MELO3C025230T3mRNA
MELO3C025230T2MELO3C025230T2mRNA
MELO3C025230T1MELO3C025230T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46685MU46685transcribed_cluster
MU65116MU65116transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXINcoord: 11..135
score: 1.6
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 26..127
score: 1.7
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 20..127
score: 1.92
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 29..127
score: 1.1
IPR013766Thioredoxin domainPROFILEPS51352THIOREDOXIN_2coord: 17..132
score: 11
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 50..68
scor
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 96..107
score: 1.7E-5coord: 57..66
score: 1.7E-5coord: 49..57
score: 1.
NoneNo IPR availablePANTHERPTHR10438:SF240THIOREDOXIN H9coord: 11..135
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C025230Csa4G334700Cucumber (Chinese Long) v2cumeB267
MELO3C025230Cla012040Watermelon (97103) v1mewmB575
MELO3C025230ClCG04G006290Watermelon (Charleston Gray)mewcgB525
MELO3C025230ClCG11G005530Watermelon (Charleston Gray)mewcgB511
MELO3C025230Cla97C04G072870Watermelon (97103) v2mewmbB533
MELO3C025230Cla97C11G212460Watermelon (97103) v2mewmbB522
MELO3C025230Bhi03G001775Wax gourdmewgoB652
MELO3C025230CSPI04G16660Wild cucumber (PI 183967)cpimeB330
MELO3C025230Cucsa.130600Cucumber (Gy14) v1cgymeB210
MELO3C025230CmaCh03G002870Cucurbita maxima (Rimu)cmameB610
MELO3C025230CmaCh04G028520Cucurbita maxima (Rimu)cmameB709
MELO3C025230CmaCh07G012160Cucurbita maxima (Rimu)cmameB801
MELO3C025230CmoCh07G012570Cucurbita moschata (Rifu)cmomeB785
MELO3C025230CmoCh04G029800Cucurbita moschata (Rifu)cmomeB701
MELO3C025230CmoCh03G002970Cucurbita moschata (Rifu)cmomeB599
MELO3C025230Lsi03G002490Bottle gourd (USVL1VR-Ls)lsimeB276
MELO3C025230Lsi01G016250Bottle gourd (USVL1VR-Ls)lsimeB157
MELO3C025230Cp4.1LG19g01590Cucurbita pepo (Zucchini)cpemeB459
MELO3C025230Cp4.1LG10g07370Cucurbita pepo (Zucchini)cpemeB070
MELO3C025230CsGy4G015970Cucumber (Gy14) v2cgybmeB284
MELO3C025230Carg19523Silver-seed gourdcarmeB0627
MELO3C025230Carg12645Silver-seed gourdcarmeB0283
MELO3C025230Carg05926Silver-seed gourdcarmeB0025
MELO3C025230CsaV3_4G027270Cucumber (Chinese Long) v3cucmeB335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None