MELO3C024810 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024810
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_1
Location	chr7 : 18012580 .. 18012906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGATGAAGATGGAGAAGAGAGTGAGAAGCAGCAGCAAATGCAGACAAAGTTGAAGATGCTGATTTCATGGCTTCCATTGCTATGCAGAGGCAGCAACGGGACTGATGCGCCCATCCTCAGCATTGGAGAACGGCGAGAGTTGGAGTTGGGGTTGGAGGAGATGATAGGAACATTGCAACAAGATGAGCAAGAGCAAGTATTAGCTTTGTGGCTCCACAATTTCACTTACTCGTCCTTGTCCGATTGGCCAAACCTCCACGCGTCATACGCTCGGTGGTACAGTGCCTCTCGTAAGCTCTTGATCGACCGGGATCAGTAA

mRNA sequence

ATGGGAAAGGATGAAGATGGAGAAGAGAGTGAGAAGCAGCAGCAAATGCAGACAAAGTTGAAGATGCTGATTTCATGGCTTCCATTGCTATGCAGAGGCAGCAACGGGACTGATGCGCCCATCCTCAGCATTGGAGAACGGCGAGAGTTGGAGTTGGGGTTGGAGGAGATGATAGGAACATTGCAACAAGATGAGCAAGAGCAAGTATTAGCTTTGTGGCTCCACAATTTCACTTACTCGTCCTTGTCCGATTGGCCAAACCTCCACGCGTCATACGCTCGGTGGTACAGTGCCTCTCGTAAGCTCTTGATCGACCGGGATCAGTAA

Coding sequence (CDS)

ATGGGAAAGGATGAAGATGGAGAAGAGAGTGAGAAGCAGCAGCAAATGCAGACAAAGTTGAAGATGCTGATTTCATGGCTTCCATTGCTATGCAGAGGCAGCAACGGGACTGATGCGCCCATCCTCAGCATTGGAGAACGGCGAGAGTTGGAGTTGGGGTTGGAGGAGATGATAGGAACATTGCAACAAGATGAGCAAGAGCAAGTATTAGCTTTGTGGCTCCACAATTTCACTTACTCGTCCTTGTCCGATTGGCCAAACCTCCACGCGTCATACGCTCGGTGGTACAGTGCCTCTCGTAAGCTCTTGATCGACCGGGATCAGTAA

Protein sequence

MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTLQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ*

Homology

[Close]

BLAST of MELO3C024810 vs. TrEMBL
Match: A0A0A0KXY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 60
           MGKDED EES KQQQMQ KLKMLISWLPLLCRGS+GTDAPILSIGERRELELGLEEMIGT
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ 109
           LQQDEQEQVLALWLHNFTY S SDWPNLHASYARWYSASRKLLI +DQ
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQDQ 390

[Close]

BLAST of MELO3C024810 vs. TrEMBL
Match: A0A061E933_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 1


Query: 5   EDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTLQQD 64
           E+ EE  K+   QTKLKML SWLPLLCR SNGTDAP+LSI ER ELE  LEE I  L+Q+
Sbjct: 283 EETEEGNKENLRQTKLKMLTSWLPLLCRASNGTDAPVLSISERAELEKLLEETIEMLEQE 342

Query: 65  EQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           EQEQVL+LWLH+FT+S  SDWPNLH SYARW + SRKLL+
Sbjct: 343 EQEQVLSLWLHHFTHSPSSDWPNLHESYARWCTTSRKLLL 382

[Close]

BLAST of MELO3C024810 vs. TrEMBL
Match: A0A067ED32_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0173161mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-32
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 1


Query: 5   EDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTL-QQ 64
           E+ EE +K++Q +T  KML+SWLPLLCRGSNG D P++S+ ER ELE  LEE I  L Q+
Sbjct: 12  EEPEEGKKEEQRKTNKKMLVSWLPLLCRGSNGVDVPVMSLNERAELEKVLEETIDMLEQE 71

Query: 65  DEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           DEQEQVL+LWLH+FTY S +DWPNLHASYARWY+ASRK L+
Sbjct: 72  DEQEQVLSLWLHHFTYCSSADWPNLHASYARWYNASRKQLL 112

[Close]

BLAST of MELO3C024810 vs. TrEMBL
Match: B9IJF8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08030g PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 70/105 (66.67%), Postives = 88/105 (83.81%), Query Frame = 1


Query: 1   MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 60
           +G DE GE  +++ Q QTK+KML+SWLPLLCR SNGTDAP+LS+ ER ELE+ LEEMI  
Sbjct: 281 LGLDEAGE-GQREPQRQTKMKMLLSWLPLLCRASNGTDAPVLSMRERAELEIVLEEMIDM 340

Query: 61  LQ-QDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           L+ ++EQEQVL+LWLH+FTY+  SDWPNL ASYARW +ASR+LL+
Sbjct: 341 LEHEEEQEQVLSLWLHHFTYTPSSDWPNLRASYARWCTASRQLLL 384

[Close]

BLAST of MELO3C024810 vs. TrEMBL
Match: V4S9G6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028678mg PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 67/101 (66.34%), Postives = 83/101 (82.18%), Query Frame = 1


Query: 5   EDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTL-QQ 64
           E+ EE +K++Q +T  KML+SWLPLLCRGSNG + P++S+ ER ELE  LEE I  L Q+
Sbjct: 270 EEPEEGKKEEQRKTNKKMLVSWLPLLCRGSNGVNVPVMSLNERAELEKVLEETIDMLEQE 329

Query: 65  DEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           DEQEQVL+LWLH+FTY S +DWPNLHASYARWY+ASRK L+
Sbjct: 330 DEQEQVLSLWLHHFTYCSSADWPNLHASYARWYNASRKQLL 370

[Close]

BLAST of MELO3C024810 vs. TAIR10
Match: AT5G64230.1 (AT5G64230.1 unknown protein)

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-27
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 3   KDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTLQ 62
           K  + EE E+ +  + K KMLISW+PLLCR SNG D P+L   ER  LE  LE+MI  L+
Sbjct: 276 KGSEEEEGEEAKLREIKKKMLISWIPLLCRASNGADKPVLRSAERAYLEKVLEKMISELK 335

Query: 63  QDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           ++EQE+VL+LWLH++T+ + SDWP+L+ SY RW  +SR+LL+
Sbjct: 336 EEEQERVLSLWLHHYTHCASSDWPDLNGSYVRWCHSSRQLLL 377

[Close]

BLAST of MELO3C024810 vs. TAIR10
Match: AT3G19920.1 (AT3G19920.1 unknown protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 17  QTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTLQQDEQEQVLALWLHN 76
           Q   ++L +WLPL     NG   P+L+  ER E+E  +++ I TL   +QE +L  WL +
Sbjct: 330 QVTFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQD 389

Query: 77  FTYSSLSDWPNLHASYARWYSASRKLLI 105
           F+ S+ S+WPNL  +Y RW  ++R+L +
Sbjct: 390 FSVSA-SEWPNLQPAYDRWCHSTRQLFM 416

[Close]

BLAST of MELO3C024810 vs. NCBI nr
Match: gi|659125788|ref|XP_008462861.1| (PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 60
           MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT
Sbjct: 287 MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 346

Query: 61  LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ 109
           LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ
Sbjct: 347 LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ 394

[Close]

BLAST of MELO3C024810 vs. NCBI nr
Match: gi|449439003|ref|XP_004137277.1| (PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-49
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 60
           MGKDED EES KQQQMQ KLKMLISWLPLLCRGS+GTDAPILSIGERRELELGLEEMIGT
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDRDQ 109
           LQQDEQEQVLALWLHNFTY S SDWPNLHASYARWYSASRKLLI +DQ
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQDQ 390

[Close]

BLAST of MELO3C024810 vs. NCBI nr
Match: gi|568882126|ref|XP_006493890.1| (PREDICTED: uncharacterized protein LOC102621648 isoform X1 [Citrus sinensis])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 1


Query: 5   EDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTL-QQ 64
           E+ EE +K++Q +TK KML+SWLPLLCRGSNG D P++S+ ER ELE  LEE I  L Q+
Sbjct: 270 EEPEEGKKEEQRKTKKKMLVSWLPLLCRGSNGVDVPVMSLNERAELEKVLEETIDMLEQE 329

Query: 65  DEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           DEQEQVL+LWLH+FTY S +DWPNLHASYARWY+ASRK L+
Sbjct: 330 DEQEQVLSLWLHHFTYCSSADWPNLHASYARWYNASRKQLL 370

[Close]

BLAST of MELO3C024810 vs. NCBI nr
Match: gi|694434736|ref|XP_009344578.1| (PREDICTED: uncharacterized protein LOC103936468 [Pyrus x bretschneideri])

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 1   MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 60
           +GKDE  +E +K+Q  QTK++ML+SWLPLLCR SNGTD P+LSI ER ELE  LEE I  
Sbjct: 290 VGKDEADDEIKKEQHKQTKMQMLMSWLPLLCRASNGTDVPVLSIAERTELERVLEETIEM 349

Query: 61  LQQDE-QEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           L+ +E QE+VL+LWLH+FT+SS SDWPNLHASYARW + SRKLL+
Sbjct: 350 LEDEENQEKVLSLWLHHFTHSSFSDWPNLHASYARWCNTSRKLLL 394

[Close]

BLAST of MELO3C024810 vs. NCBI nr
Match: gi|641830011|gb|KDO49112.1| (hypothetical protein CISIN_1g0173161mg, partial [Citrus sinensis])

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-32
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 1


Query: 5   EDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGTL-QQ 64
           E+ EE +K++Q +T  KML+SWLPLLCRGSNG D P++S+ ER ELE  LEE I  L Q+
Sbjct: 12  EEPEEGKKEEQRKTNKKMLVSWLPLLCRGSNGVDVPVMSLNERAELEKVLEETIDMLEQE 71

Query: 65  DEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLI 105
           DEQEQVL+LWLH+FTY S +DWPNLHASYARWY+ASRK L+
Sbjct: 72  DEQEQVLSLWLHHFTYCSSADWPNLHASYARWYNASRKQLL 112

The following BLAST results are available for this feature:

BLAST of MELO3C024810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY7_CUCSA	1.1e-49	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1	[more]
A0A061E933_THECC	3.6e-32	70.00	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1	[more]
A0A067ED32_CITSI	3.6e-32	67.33	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0173161mg PE=4 ...	[more]
B9IJF8_POPTR	1.0e-31	66.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08030g PE=4 SV=1	[more]
V4S9G6_9ROSI	1.4e-31	66.34	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028678mg PE=4 SV=1	[more]

BLAST of MELO3C024810 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64230.1	3.1e-27	52.94	unknown protein	[more]
AT3G19920.1	1.3e-12	38.64	unknown protein	[more]

BLAST of MELO3C024810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125788\|ref\|XP_008462861.1\|	3.3e-55	100.00	PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo]	[more]
gi\|449439003\|ref\|XP_004137277.1\|	1.6e-49	92.59	PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus]	[more]
gi\|568882126\|ref\|XP_006493890.1\|	1.3e-32	68.32	PREDICTED: uncharacterized protein LOC102621648 isoform X1 [Citrus sinensis]	[more]
gi\|694434736\|ref\|XP_009344578.1\|	3.0e-32	66.67	PREDICTED: uncharacterized protein LOC103936468 [Pyrus x bretschneideri]	[more]
gi\|641830011\|gb\|KDO49112.1\|	5.1e-32	67.33	hypothetical protein CISIN_1g0173161mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024810T1	MELO3C024810T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 47..67 scor
None	No IPR available	PANTHER	PTHR31060	FAMILY NOT NAMED	coord: 8..104 score: 2.4
None	No IPR available	PANTHER	PTHR31060:SF4	SUBFAMILY NOT NAMED	coord: 8..104 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024810	Csa4G109030	Cucumber (Chinese Long) v2	cumeB315
MELO3C024810	Cla002479	Watermelon (97103) v1	mewmB498
MELO3C024810	ClCG10G009290	Watermelon (Charleston Gray)	mewcgB454
MELO3C024810	Cla97C10G192450	Watermelon (97103) v2	mewmbB464
MELO3C024810	CSPI04G09310	Wild cucumber (PI 183967)	cpimeB314
MELO3C024810	Cucsa.398170	Cucumber (Gy14) v1	cgymeB653
MELO3C024810	CmaCh16G002590	Cucurbita maxima (Rimu)	cmameB306
MELO3C024810	CmoCh16G002680	Cucurbita moschata (Rifu)	cmomeB296
MELO3C024810	Lsi03G009510	Bottle gourd (USVL1VR-Ls)	lsimeB270
MELO3C024810	Cp4.1LG14g04980	Cucurbita pepo (Zucchini)	cpemeB198
MELO3C024810	CsGy4G009060	Cucumber (Gy14) v2	cgybmeB273
MELO3C024810	Carg16790	Silver-seed gourd	carmeB0860
MELO3C024810	CsaV3_4G009470	Cucumber (Chinese Long) v3	cucmeB319

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024810	Cucurbita maxima (Rimu)	cmameB697
MELO3C024810	Cucurbita moschata (Rifu)	cmomeB689
MELO3C024810	Cucurbita pepo (Zucchini)	cpemeB419
MELO3C024810	Silver-seed gourd	carmeB0382