CmaCh16G002590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	1,8-cineole synthase, chloroplastic
Location	Cma_Chr16 : 1219270 .. 1219596 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

mRNA sequence

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

Coding sequence (CDS)

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

Protein sequence

MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHRHH

Homology

[Close]

BLAST of CmaCh16G002590 vs. TrEMBL
Match: A0A0A0KXY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-32
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+ KLKML SWL LLCRG +GTDAPILS GERRE+E  LEEMI T
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTY SSSD P+LHASY RWY+ SRKL +H+
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQ 388

[Close]

BLAST of CmaCh16G002590 vs. TrEMBL
Match: A0A0B0PW45_GOSAR (1,8-cineole synthase, chloroplastic OS=Gossypium arboreum GN=F383_15180 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 4   EEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQ 63
           + EA  E  R   +TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ IA LQ 
Sbjct: 264 DSEATEEGSR---QTKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTIAMLQH 323

Query: 64  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            +QEQVL+LWL HFTY  SSD P+LHASY RW TTSRKLF+
Sbjct: 324 EEQEQVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLFL 361

[Close]

BLAST of CmaCh16G002590 vs. TrEMBL
Match: A0A061E933_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MGKE-EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIA 60
           MG E EE E   +    +TKLKML SWL LLCR  NGTDAP+LS  ER E+E +LEE I 
Sbjct: 278 MGLEVEETEEGNKENLRQTKLKMLTSWLPLLCRASNGTDAPVLSISERAELEKLLEETIE 337

Query: 61  TLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            L+Q +QEQVL+LWL HFT+S SSD P+LH SY RW TTSRKL +
Sbjct: 338 MLEQEEQEQVLSLWLHHFTHSPSSDWPNLHESYARWCTTSRKLLL 382

[Close]

BLAST of CmaCh16G002590 vs. TrEMBL
Match: A0A0D2TPS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 8   ESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQE 67
           E+E   RQ  TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ +  LQ  +QE
Sbjct: 234 ETEEGSRQ--TKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTVDMLQHKEQE 293

Query: 68  QVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           QVL+LWL HFTY  SSD P+LHASY RW TTSRKL +
Sbjct: 294 QVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLLL 328

[Close]

BLAST of CmaCh16G002590 vs. TrEMBL
Match: A0A0D2S354_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 8   ESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQE 67
           E+E   RQ  TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ +  LQ  +QE
Sbjct: 271 ETEEGSRQ--TKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTVDMLQHKEQE 330

Query: 68  QVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           QVL+LWL HFTY  SSD P+LHASY RW TTSRKL +
Sbjct: 331 QVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLLL 365

[Close]

BLAST of CmaCh16G002590 vs. TAIR10
Match: AT5G64230.1 (AT5G64230.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 2   GKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATL 61
           G EEE   E + R  E K KML SW+ LLCR  NG D P+L + ER  +E VLE+MI+ L
Sbjct: 277 GSEEEEGEEAKLR--EIKKKMLISWIPLLCRASNGADKPVLRSAERAYLEKVLEKMISEL 336

Query: 62  QQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           ++ +QE+VL+LWL H+T+ +SSD PDL+ SY RW  +SR+L +
Sbjct: 337 KEEEQERVLSLWLHHYTHCASSDWPDLNGSYVRWCHSSRQLLL 377

[Close]

BLAST of CmaCh16G002590 vs. TAIR10
Match: AT3G19920.1 (AT3G19920.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-10
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 17  ETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQEQVLALWLLH 76
           +   ++L +WL L     NG   P+L+  ER EVE  +++ I+TL   DQE +L  WL  
Sbjct: 330 QVTFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQD 389

Query: 77  FTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           F+  S+S+ P+L  +Y RW  ++R+LF+
Sbjct: 390 FSV-SASEWPNLQPAYDRWCHSTRQLFM 416

[Close]

BLAST of CmaCh16G002590 vs. NCBI nr
Match: gi|659125788|ref|XP_008462861.1| (PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 6.0e-33
Identity = 75/106 (70.75%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+TKLKML SWL LLCRG NGTDAPILS GERRE+E  LEEMI T
Sbjct: 287 MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 346

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTYSS SD P+LHASY RWY+ SRKL + R
Sbjct: 347 LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDR 392

[Close]

BLAST of CmaCh16G002590 vs. NCBI nr
Match: gi|449439003|ref|XP_004137277.1| (PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-32
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+ KLKML SWL LLCRG +GTDAPILS GERRE+E  LEEMI T
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTY SSSD P+LHASY RWY+ SRKL +H+
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQ 388

[Close]

BLAST of CmaCh16G002590 vs. NCBI nr
Match: gi|728849619|gb|KHG29062.1| (1,8-cineole synthase, chloroplastic [Gossypium arboreum])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 4   EEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQ 63
           + EA  E  R   +TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ IA LQ 
Sbjct: 264 DSEATEEGSR---QTKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTIAMLQH 323

Query: 64  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            +QEQVL+LWL HFTY  SSD P+LHASY RW TTSRKLF+
Sbjct: 324 EEQEQVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLFL 361

[Close]

BLAST of CmaCh16G002590 vs. NCBI nr
Match: gi|590688377|ref|XP_007042930.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MGKE-EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIA 60
           MG E EE E   +    +TKLKML SWL LLCR  NGTDAP+LS  ER E+E +LEE I 
Sbjct: 278 MGLEVEETEEGNKENLRQTKLKMLTSWLPLLCRASNGTDAPVLSISERAELEKLLEETIE 337

Query: 61  TLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            L+Q +QEQVL+LWL HFT+S SSD P+LH SY RW TTSRKL +
Sbjct: 338 MLEQEEQEQVLSLWLHHFTHSPSSDWPNLHESYARWCTTSRKLLL 382

[Close]

BLAST of CmaCh16G002590 vs. NCBI nr
Match: gi|658026782|ref|XP_008348814.1| (PREDICTED: uncharacterized protein LOC103411982 [Malus domestica])

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 5   EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATL-QQ 64
           +E + E +++  +TK++ML SWL LLCR  NGTD P+LS GER E+E VLEE I  L ++
Sbjct: 297 DETDDESKKQHKQTKMQMLMSWLPLLCRASNGTDVPVLSIGERAELERVLEETIEMLEEE 356

Query: 65  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHRH 108
            DQE+VL+LWL HFT+ SSSD P+LHASY RW   SRKL +H H
Sbjct: 357 EDQEKVLSLWLHHFTHCSSSDWPNLHASYARWCNASRKLLLHHH 400

The following BLAST results are available for this feature:

BLAST of CmaCh16G002590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY7_CUCSA	6.0e-32	68.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1	[more]
A0A0B0PW45_GOSAR	1.1e-25	63.37	1,8-cineole synthase, chloroplastic OS=Gossypium arboreum GN=F383_15180 PE=4 SV=...	[more]
A0A061E933_THECC	2.4e-25	61.90	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1	[more]
A0A0D2TPS8_GOSRA	2.1e-24	62.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1	[more]
A0A0D2S354_GOSRA	2.1e-24	62.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1	[more]

BLAST of CmaCh16G002590 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64230.1	5.0e-22	51.46	unknown protein	[more]
AT3G19920.1	9.9e-10	37.50	unknown protein	[more]

BLAST of CmaCh16G002590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125788\|ref\|XP_008462861.1\|	6.0e-33	70.75	PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo]	[more]
gi\|449439003\|ref\|XP_004137277.1\|	8.6e-32	68.87	PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus]	[more]
gi\|728849619\|gb\|KHG29062.1\|	1.6e-25	63.37	1,8-cineole synthase, chloroplastic [Gossypium arboreum]	[more]
gi\|590688377\|ref\|XP_007042930.1\|	3.5e-25	61.90	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|658026782\|ref\|XP_008348814.1\|	1.7e-24	57.69	PREDICTED: uncharacterized protein LOC103411982 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002590.1	CmaCh16G002590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31060	FAMILY NOT NAMED	coord: 6..107 score: 7.0
None	No IPR available	PANTHER	PTHR31060:SF4	SUBFAMILY NOT NAMED	coord: 6..107 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002590	MELO3C024810	Melon (DHL92) v3.5.1	cmameB306
CmaCh16G002590	CmoCh16G002680	Cucurbita moschata (Rifu)	cmacmoB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002590	Silver-seed gourd	carcmaB0406
CmaCh16G002590	Silver-seed gourd	carcmaB0526
CmaCh16G002590	Silver-seed gourd	carcmaB1207
CmaCh16G002590	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G002590	Cucumber (Chinese Long) v3	cmacucB0389
CmaCh16G002590	Watermelon (97103) v2	cmawmbB332
CmaCh16G002590	Watermelon (97103) v2	cmawmbB352
CmaCh16G002590	Wax gourd	cmawgoB0410
CmaCh16G002590	Wax gourd	cmawgoB0440
CmaCh16G002590	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002590	Cucumber (Gy14) v1	cgycmaB0196
CmaCh16G002590	Cucumber (Gy14) v1	cgycmaB1101
CmaCh16G002590	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002590	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002590	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G002590	Wild cucumber (PI 183967)	cmacpiB339
CmaCh16G002590	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G002590	Cucumber (Chinese Long) v2	cmacuB334
CmaCh16G002590	Melon (DHL92) v3.5.1	cmameB304
CmaCh16G002590	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G002590	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G002590	Watermelon (97103) v1	cmawmB293
CmaCh16G002590	Watermelon (97103) v1	cmawmB313
CmaCh16G002590	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002590	Cucurbita pepo (Zucchini)	cmacpeB346
CmaCh16G002590	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002590	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G002590	Bottle gourd (USVL1VR-Ls)	cmalsiB323
CmaCh16G002590	Cucumber (Gy14) v2	cgybcmaB493
CmaCh16G002590	Cucumber (Gy14) v2	cgybcmaB495
CmaCh16G002590	Melon (DHL92) v3.6.1	cmamedB355
CmaCh16G002590	Melon (DHL92) v3.6.1	cmamedB357