CmaCh16G002590.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002590.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	1,8-cineole synthase, chloroplastic
Location	Cma_Chr16 : 1219270 .. 1219596 (+)
Sequence length	327

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

mRNA sequence

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

Coding sequence (CDS)

ATGGGAAAGGAAGAAGAAGCAGAGAGTGAGAGACGGCGGCGGCAGATGGAAACCAAGCTGAAGATGCTGAATTCATGGCTTGCATTGCTATGCAGAGGCATCAACGGGACTGATGCGCCCATTCTAAGCACCGGGGAACGCCGAGAGGTGGAGTCGGTGTTGGAGGAGATGATAGCCACACTGCAACAAAACGATCAAGAACAAGTCTTGGCTCTGTGGCTCCTCCATTTCACTTACTCCTCCTCCTCCGACAGGCCCGACCTCCATGCCTCCTATACTCGCTGGTACACCACCTCTCGTAAGCTCTTCGTCCACCGACATCACTAA

Protein sequence

MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHRHH

Homology

[Close]

BLAST of CmaCh16G002590.1 vs. TrEMBL
Match: A0A0A0KXY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-32
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+ KLKML SWL LLCRG +GTDAPILS GERRE+E  LEEMI T
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTY SSSD P+LHASY RWY+ SRKL +H+
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQ 388

[Close]

BLAST of CmaCh16G002590.1 vs. TrEMBL
Match: A0A0B0PW45_GOSAR (1,8-cineole synthase, chloroplastic OS=Gossypium arboreum GN=F383_15180 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 4   EEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQ 63
           + EA  E  R   +TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ IA LQ 
Sbjct: 264 DSEATEEGSR---QTKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTIAMLQH 323

Query: 64  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            +QEQVL+LWL HFTY  SSD P+LHASY RW TTSRKLF+
Sbjct: 324 EEQEQVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLFL 361

[Close]

BLAST of CmaCh16G002590.1 vs. TrEMBL
Match: A0A061E933_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-25
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MGKE-EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIA 60
           MG E EE E   +    +TKLKML SWL LLCR  NGTDAP+LS  ER E+E +LEE I 
Sbjct: 278 MGLEVEETEEGNKENLRQTKLKMLTSWLPLLCRASNGTDAPVLSISERAELEKLLEETIE 337

Query: 61  TLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            L+Q +QEQVL+LWL HFT+S SSD P+LH SY RW TTSRKL +
Sbjct: 338 MLEQEEQEQVLSLWLHHFTHSPSSDWPNLHESYARWCTTSRKLLL 382

[Close]

BLAST of CmaCh16G002590.1 vs. TrEMBL
Match: A0A0D2TPS8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 8   ESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQE 67
           E+E   RQ  TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ +  LQ  +QE
Sbjct: 234 ETEEGSRQ--TKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTVDMLQHKEQE 293

Query: 68  QVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           QVL+LWL HFTY  SSD P+LHASY RW TTSRKL +
Sbjct: 294 QVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLLL 328

[Close]

BLAST of CmaCh16G002590.1 vs. TrEMBL
Match: A0A0D2S354_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-24
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 8   ESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQE 67
           E+E   RQ  TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ +  LQ  +QE
Sbjct: 271 ETEEGSRQ--TKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTVDMLQHKEQE 330

Query: 68  QVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           QVL+LWL HFTY  SSD P+LHASY RW TTSRKL +
Sbjct: 331 QVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLLL 365

[Close]

BLAST of CmaCh16G002590.1 vs. TAIR10
Match: AT5G64230.1 (AT5G64230.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.0e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 2   GKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATL 61
           G EEE   E + R  E K KML SW+ LLCR  NG D P+L + ER  +E VLE+MI+ L
Sbjct: 277 GSEEEEGEEAKLR--EIKKKMLISWIPLLCRASNGADKPVLRSAERAYLEKVLEKMISEL 336

Query: 62  QQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           ++ +QE+VL+LWL H+T+ +SSD PDL+ SY RW  +SR+L +
Sbjct: 337 KEEEQERVLSLWLHHYTHCASSDWPDLNGSYVRWCHSSRQLLL 377

[Close]

BLAST of CmaCh16G002590.1 vs. TAIR10
Match: AT3G19920.1 (AT3G19920.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-10
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 17  ETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQNDQEQVLALWLLH 76
           +   ++L +WL L     NG   P+L+  ER EVE  +++ I+TL   DQE +L  WL  
Sbjct: 330 QVTFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQD 389

Query: 77  FTYSSSSDRPDLHASYTRWYTTSRKLFV 105
           F+  S+S+ P+L  +Y RW  ++R+LF+
Sbjct: 390 FSV-SASEWPNLQPAYDRWCHSTRQLFM 416

[Close]

BLAST of CmaCh16G002590.1 vs. NCBI nr
Match: gi|659125788|ref|XP_008462861.1| (PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 6.0e-33
Identity = 75/106 (70.75%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+TKLKML SWL LLCRG NGTDAPILS GERRE+E  LEEMI T
Sbjct: 287 MGKDEDGEESEKQQQMQTKLKMLISWLPLLCRGSNGTDAPILSIGERRELELGLEEMIGT 346

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTYSS SD P+LHASY RWY+ SRKL + R
Sbjct: 347 LQQDEQEQVLALWLHNFTYSSLSDWPNLHASYARWYSASRKLLIDR 392

[Close]

BLAST of CmaCh16G002590.1 vs. NCBI nr
Match: gi|449439003|ref|XP_004137277.1| (PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-32
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MGKEEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIAT 60
           MGK+E+ E   +++QM+ KLKML SWL LLCRG +GTDAPILS GERRE+E  LEEMI T
Sbjct: 283 MGKDEDEEESVKQQQMQMKLKMLISWLPLLCRGSSGTDAPILSIGERRELELGLEEMIGT 342

Query: 61  LQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHR 107
           LQQ++QEQVLALWL +FTY SSSD P+LHASY RWY+ SRKL +H+
Sbjct: 343 LQQDEQEQVLALWLHNFTYLSSSDWPNLHASYARWYSASRKLLIHQ 388

[Close]

BLAST of CmaCh16G002590.1 vs. NCBI nr
Match: gi|728849619|gb|KHG29062.1| (1,8-cineole synthase, chloroplastic [Gossypium arboreum])

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 4   EEEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATLQQ 63
           + EA  E  R   +TK+KML SWL LLCRG NGTD P+LS  ER E+E +LE+ IA LQ 
Sbjct: 264 DSEATEEGSR---QTKMKMLTSWLPLLCRGSNGTDMPVLSLSERAELEKILEDTIAMLQH 323

Query: 64  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            +QEQVL+LWL HFTY  SSD P+LHASY RW TTSRKLF+
Sbjct: 324 EEQEQVLSLWLHHFTYCPSSDWPNLHASYARWCTTSRKLFL 361

[Close]

BLAST of CmaCh16G002590.1 vs. NCBI nr
Match: gi|590688377|ref|XP_007042930.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 1   MGKE-EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIA 60
           MG E EE E   +    +TKLKML SWL LLCR  NGTDAP+LS  ER E+E +LEE I 
Sbjct: 278 MGLEVEETEEGNKENLRQTKLKMLTSWLPLLCRASNGTDAPVLSISERAELEKLLEETIE 337

Query: 61  TLQQNDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFV 105
            L+Q +QEQVL+LWL HFT+S SSD P+LH SY RW TTSRKL +
Sbjct: 338 MLEQEEQEQVLSLWLHHFTHSPSSDWPNLHESYARWCTTSRKLLL 382

[Close]

BLAST of CmaCh16G002590.1 vs. NCBI nr
Match: gi|658026782|ref|XP_008348814.1| (PREDICTED: uncharacterized protein LOC103411982 [Malus domestica])

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 5   EEAESERRRRQMETKLKMLNSWLALLCRGINGTDAPILSTGERREVESVLEEMIATL-QQ 64
           +E + E +++  +TK++ML SWL LLCR  NGTD P+LS GER E+E VLEE I  L ++
Sbjct: 297 DETDDESKKQHKQTKMQMLMSWLPLLCRASNGTDVPVLSIGERAELERVLEETIEMLEEE 356

Query: 65  NDQEQVLALWLLHFTYSSSSDRPDLHASYTRWYTTSRKLFVHRH 108
            DQE+VL+LWL HFT+ SSSD P+LHASY RW   SRKL +H H
Sbjct: 357 EDQEKVLSLWLHHFTHCSSSDWPNLHASYARWCNASRKLLLHHH 400

The following BLAST results are available for this feature:

BLAST of CmaCh16G002590.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002590.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY7_CUCSA	6.0e-32	68.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G109030 PE=4 SV=1	[more]
A0A0B0PW45_GOSAR	1.1e-25	63.37	1,8-cineole synthase, chloroplastic OS=Gossypium arboreum GN=F383_15180 PE=4 SV=...	[more]
A0A061E933_THECC	2.4e-25	61.90	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007464 PE=4 SV=1	[more]
A0A0D2TPS8_GOSRA	2.1e-24	62.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1	[more]
A0A0D2S354_GOSRA	2.1e-24	62.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G142400 PE=4 SV=1	[more]

BLAST of CmaCh16G002590.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64230.1	5.0e-22	51.46	unknown protein	[more]
AT3G19920.1	9.9e-10	37.50	unknown protein	[more]

BLAST of CmaCh16G002590.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125788\|ref\|XP_008462861.1\|	6.0e-33	70.75	PREDICTED: uncharacterized protein LOC103501143 [Cucumis melo]	[more]
gi\|449439003\|ref\|XP_004137277.1\|	8.6e-32	68.87	PREDICTED: uncharacterized protein LOC101222931 [Cucumis sativus]	[more]
gi\|728849619\|gb\|KHG29062.1\|	1.6e-25	63.37	1,8-cineole synthase, chloroplastic [Gossypium arboreum]	[more]
gi\|590688377\|ref\|XP_007042930.1\|	3.5e-25	61.90	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|658026782\|ref\|XP_008348814.1\|	1.7e-24	57.69	PREDICTED: uncharacterized protein LOC103411982 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G002590	CmaCh16G002590	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002590.1	CmaCh16G002590.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002590.1.exon.1	CmaCh16G002590.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G002590.1.CDS.1	CmaCh16G002590.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31060	FAMILY NOT NAMED	coord: 6..107 score: 7.0
None	No IPR available	PANTHER	PTHR31060:SF4	SUBFAMILY NOT NAMED	coord: 6..107 score: 7.0