MELO3C024616 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024616
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Dedicator of cytokinesis protein 3
Location	chr8 : 7505755 .. 7506303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATCCAAGCTTAATTGTGAGAGGAATTATATAGATATCCAATATATATAAAATATATCGTCAAATTAGTTTATAATTTGAAAGATGACTCTTGGATTGGGGATTATTGGTGGCCTTCAGATTGAAGCTTCAGTGCAGAAAGTAATTGTTGACGTAATTATTCCGCTTGTGCTTAATCATATCCGGCTTGTACTTAGAATTGATGCCGAAATTGAAGGTGTTGTGGATGTTGTGTGTGAGGGTGGGCTAGGTGGCAAAATATATATCCTTAAGTTGAAGATAAAGGTCAGAATTGGTGGTGTTTATGTTAGTAAGTTGGCTGTGGTTAAAGTCAATTTTCCACCCTTCGGCGTTCCATACCTTGTCTCTTTCGAGTATGTTGAAGAAATCAACATCTAAAAACCAAGAAATCATGCTATGTATAATGAAGATGGTGCTTTCTTATGTATCATTTTCATCTCTTATATATATCCATCAATAAATATGTAAAACCTCTCTTCAAGAATGCAGTAGGGGATATTTCAGTTTATACTATATTTTTACTTTTT

mRNA sequence

ATCATCCAAGCTTAATTGTGAGAGGAATTATATAGATATCCAATATATATAAAATATATCGTCAAATTAGTTTATAATTTGAAAGATGACTCTTGGATTGGGGATTATTGGTGGCCTTCAGATTGAAGCTTCAGTGCAGAAAGTAATTGTTGACGTAATTATTCCGCTTGTGCTTAATCATATCCGGCTTGTACTTAGAATTGATGCCGAAATTGAAGGTGTTGTGGATGTTGTGTGTGAGGGTGGGCTAGGTGGCAAAATATATATCCTTAAGTTGAAGATAAAGGTCAGAATTGGTGGTGTTTATGTTAGTAAGTTGGCTGTGGTTAAAGTCAATTTTCCACCCTTCGGCGTTCCATACCTTGTCTCTTTCGAGTATGTTGAAGAAATCAACATCTAAAAACCAAGAAATCATGCTATGTATAATGAAGATGGTGCTTTCTTATGTATCATTTTCATCTCTTATATATATCCATCAATAAATATGTAAAACCTCTCTTCAAGAATGCAGTAGGGGATATTTCAGTTTATACTATATTTTTACTTTTT

Coding sequence (CDS)

ATGACTCTTGGATTGGGGATTATTGGTGGCCTTCAGATTGAAGCTTCAGTGCAGAAAGTAATTGTTGACGTAATTATTCCGCTTGTGCTTAATCATATCCGGCTTGTACTTAGAATTGATGCCGAAATTGAAGGTGTTGTGGATGTTGTGTGTGAGGGTGGGCTAGGTGGCAAAATATATATCCTTAAGTTGAAGATAAAGGTCAGAATTGGTGGTGTTTATGTTAGTAAGTTGGCTGTGGTTAAAGTCAATTTTCCACCCTTCGGCGTTCCATACCTTGTCTCTTTCGAGTATGTTGAAGAAATCAACATCTAA

Protein sequence

MTLGLGIIGGLQIEASVQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGKIYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVEEINI*

Homology

[Close]

BLAST of MELO3C024616 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.8e-20
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           MTLG+GI GGLQI         + D+++  V+ H + VL+IDA  EG++D   E GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVEEINI 105
            Y LKLKIKVRIG  YV K+ +VK+ FP  G P +VSFEY+EEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of MELO3C024616 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-19
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           MTLG+GI GGLQI         + D+++  V+ H + VL+IDA  EG +D   E GL GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVEEINI 105
            YILKLK+KVRIG  YV K+ +VK+ FP  G P +VSFEY+EEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of MELO3C024616 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           M++G+GI G LQI         + D+++  V+ H + VL+IDA  EG +D   E G+ GK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVE 101
            Y  KLK+K+++G  YV K  +VK+ FP  G+P +VSFEY+E
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of MELO3C024616 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           MTLG+GI GGLQI         + D+++  V+ H + VL+IDA  EG++D   E GL GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVEEINI 105
            Y LKLKIKVRIG  YV K+ +VK+ FP  G P +VSFEY+EEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of MELO3C024616 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           MTLG+GI GGLQI         + D+++  V+ H + VL+IDA  EG +D   E GL GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVEEINI 105
            YILKLK+KVRIG  YV K+ +VK+ FP  G P +VSFEY+EEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of MELO3C024616 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-14
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 1


Query: 1   MTLGLGIIGGLQIEAS--VQKVIVDVIIPLVLNHIRLVLRIDAEIEGVVDVVCEGGLGGK 60
           M++G+GI G LQI         + D+++  V+ H + VL+IDA  EG +D   E G+ GK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  IYILKLKIKVRIGGVYVSKLAVVKVNFPPFGVPYLVSFEYVE 101
            Y  KLK+K+++G  YV K  +VK+ FP  G+P +VSFEY+E
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

The following BLAST results are available for this feature:

BLAST of MELO3C024616 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFK8_CUCSA	8.8e-20	53.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1	[more]
A0A0A0KKQ8_CUCSA	4.3e-19	52.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1	[more]
A0A0A0KFL5_CUCSA	3.2e-14	43.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1	[more]

BLAST of MELO3C024616 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193134\|gb\|KGN48338.1\|	1.3e-19	53.77	hypothetical protein Csa_6G483240 [Cucumis sativus]	[more]
gi\|700193132\|gb\|KGN48336.1\|	6.2e-19	52.83	hypothetical protein Csa_6G483230 [Cucumis sativus]	[more]
gi\|700193139\|gb\|KGN48343.1\|	4.6e-14	43.14	hypothetical protein Csa_6G483250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54522	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024616T1	MELO3C024616T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54522	MU54522	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024616	Csa6G483230	Cucumber (Chinese Long) v2	cumeB508
MELO3C024616	CSPI06G26210	Wild cucumber (PI 183967)	cpimeB513
MELO3C024616	Cucsa.100760	Cucumber (Gy14) v1	cgymeB132
MELO3C024616	CsGy6G025790	Cucumber (Gy14) v2	cgybmeB446
MELO3C024616	CsaV3_6G041470	Cucumber (Chinese Long) v3	cucmeB521

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024616	Watermelon (97103) v2	mewmbB516
MELO3C024616	Wax gourd	mewgoB654
MELO3C024616	Cucurbita maxima (Rimu)	cmameB609
MELO3C024616	Cucurbita maxima (Rimu)	cmameB799
MELO3C024616	Cucurbita moschata (Rifu)	cmomeB598
MELO3C024616	Cucurbita moschata (Rifu)	cmomeB783
MELO3C024616	Cucumber (Chinese Long) v2	cumeB504
MELO3C024616	Watermelon (Charleston Gray)	mewcgB516
MELO3C024616	Watermelon (97103) v1	mewmB571
MELO3C024616	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C024616	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C024616	Bottle gourd (USVL1VR-Ls)	lsimeB150
MELO3C024616	Silver-seed gourd	carmeB0242