CsaV3_6G041470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 24135330 .. 24135922 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGAGAGAGAGGTAAGTGTGATGGAGTGTATATAAAGAGGAGTGAAGAGTTAAGTAGAGATCATAGAAGTTTGTGAGAGAATTAGACTTATATATATCATATCAAATTAGCTTATAATTTGAAAGATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAAAAACCATGATTATGCTATGTATAATGAAAATGGTGCTTTCTCTCTTATATATCTATCAATAAATATGTAAAACCGATCTCTGTTTAAGAATGCAATATTGGATGTTTTAATTTACATTATATTTCGACTTTCTTAATGTCTATCTTCTTCT

mRNA sequence

ATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAA

Coding sequence (CDS)

ATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAA

Protein sequence

MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV
Homology
[Close]
BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_6G483235 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 8.0e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60
           MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY
Sbjct: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60

Query: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV
Sbjct: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]
BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KGN48338.1 (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  V+ HCQS+ QID  FEG++ G+ E+G NGKTYTL+LK+K +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKLKIKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EIN+
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]
BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KGN48336.1 (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 0 

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  VI HCQS+ QID  FEG + G  E+G NGKTY L+LKLK +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EI++
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]
BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KGN48343.1 (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 8  SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67
          S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 10 SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69

Query: 68 DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 98
           KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 70 IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 99

[Close]
BLAST of CsaV3_6G041470 vs. TrEMBL
Match: tr|A0A0A0KIX9|A0A0A0KIX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60
           MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY
Sbjct: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60

Query: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV
Sbjct: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]
BLAST of CsaV3_6G041470 vs. TrEMBL
Match: tr|A0A0A0KFK8|A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.8e-22
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  V+ HCQS+ QID  FEG++ G+ E+G NGKTYTL+LK+K +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKLKIKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EIN+
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]
BLAST of CsaV3_6G041470 vs. TrEMBL
Match: tr|A0A0A0KKQ8|A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.6e-21
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 0 

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  VI HCQS+ QID  FEG + G  E+G NGKTY L+LKLK +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EI++
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]
BLAST of CsaV3_6G041470 vs. TrEMBL
Match: tr|A0A0A0KFL5|A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 8  SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67
          S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 10 SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69

Query: 68 DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 98
           KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 70 IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 99

The following BLAST results are available for this feature:
BLAST of CsaV3_6G041470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48337.18.0e-55100.00hypothetical protein Csa_6G483235 [Cucumis sativus][more]
KGN48338.11.2e-2152.63hypothetical protein Csa_6G483240 [Cucumis sativus][more]
KGN48336.11.3e-2052.63hypothetical protein Csa_6G483230 [Cucumis sativus][more]
KGN48343.12.7e-1851.11hypothetical protein Csa_6G483250 [Cucumis sativus][more]
BLAST of CsaV3_6G041470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIX9|A0A0A0KIX9_CUCSA5.3e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1[more]
tr|A0A0A0KFK8|A0A0A0KFK8_CUCSA7.8e-2252.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
tr|A0A0A0KKQ8|A0A0A0KKQ8_CUCSA8.6e-2152.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
tr|A0A0A0KFL5|A0A0A0KFL5_CUCSA1.8e-1851.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041470.1CsaV3_6G041470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G041470Cucsa.100760Cucumber (Gy14) v1cgycucB126
CsaV3_6G041470CsGy6G025780Cucumber (Gy14) v2cgybcucB298
CsaV3_6G041470Cla008422Watermelon (97103) v1cucwmB527
CsaV3_6G041470MELO3C024616Melon (DHL92) v3.5.1cucmeB521
CsaV3_6G041470ClCG01G015290Watermelon (Charleston Gray)cucwcgB455
CsaV3_6G041470MELO3C024616.2Melon (DHL92) v3.6.1cucmedB509
CsaV3_6G041470Cla97C01G014250Watermelon (97103) v2cucwmbB430
CsaV3_6G041470Bhi03G001032Wax gourdcucwgoB643
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G041470Cucurbita pepo (Zucchini)cpecucB0618
CsaV3_6G041470Wild cucumber (PI 183967)cpicucB363
CsaV3_6G041470Bottle gourd (USVL1VR-Ls)cuclsiB462