Cla97C01G014250 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G014250
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr01 : 28018939 .. 28019250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTACGGGGGGAAGCATTTCTGGGAGTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACCTAGCTGTTAAGATAGTGGCTGATTATTGCAATAAAAATAGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGGAAAACATACACCCTGACTCTGAAGCTGAAGGTCAAGGTCGGTGACGTTTATGTACTTAAGATCTTTAGGGTTGTAGTGTTTGTTCCGTACATCGGCATTCCTTACGCCGTATCTTTCGAATATGTCGAAGACGTCAGCATCTAA

mRNA sequence

ATGACTCTTACGGGGGGAAGCATTTCTGGGAGTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACCTAGCTGTTAAGATAGTGGCTGATTATTGCAATAAAAATAGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGGAAAACATACACCCTGACTCTGAAGCTGAAGGTCAAGGTCGGTGACGTTTATGTACTTAAGATCTTTAGGGTTGTAGTGTTTGTTCCGTACATCGGCATTCCTTACGCCGTATCTTTCGAATATGTCGAAGACGTCAGCATCTAA

Coding sequence (CDS)

ATGACTCTTACGGGGGGAAGCATTTCTGGGAGTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACCTAGCTGTTAAGATAGTGGCTGATTATTGCAATAAAAATAGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGGAAAACATACACCCTGACTCTGAAGCTGAAGGTCAAGGTCGGTGACGTTTATGTACTTAAGATCTTTAGGGTTGTAGTGTTTGTTCCGTACATCGGCATTCCTTACGCCGTATCTTTCGAATATGTCGAAGACGTCAGCATCTAA

Protein sequence

MTLTGGSISGSVSVDVLDKFVLDLAVKIVADYCNKNRIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVGDVYVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI

Homology

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BLAST of Cla97C01G014250 vs. NCBI nr
Match: KGN48338.1 (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 8.8e-14
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MTLTGGSISGS---VSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNG 60
           MTL G  ISG    V +D+ D  + DL V+ V  +C    +I+A+   ++DG +E G NG
Sbjct: 1   MTL-GIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNG 60

Query: 61  KTYTLTLKLKVKVGDVYVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           KTYTL LK+KV++GD YV+KI  V +F P++G P  VSFEY+E+++I
Sbjct: 61  KTYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of Cla97C01G014250 vs. NCBI nr
Match: KGN48336.1 (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 12  VSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVG 71
           V +D+ D  + DL V+ V  +C    +I+A+    +DG +E G NGKTY L LKLKV++G
Sbjct: 14  VPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVRIG 73

Query: 72  DVYVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           D YV+KI  V +F P++G P  VSFEY+E++SI
Sbjct: 74  DAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of Cla97C01G014250 vs. NCBI nr
Match: KGN48343.1 (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 5   GGSISGSVSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTL 64
           GGS+   V +D+ D  + DL V+ V  +C    +I+A+    +DG +E G NGKTY+  L
Sbjct: 8   GGSLQ-IVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 67

Query: 65  KLKVKVGDVYVLKIFRVVVFVPYIGIPYAVSFEYVE 100
           KLK+KVGD YV+K   V +F P+IG+P  VSFEY+E
Sbjct: 68  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of Cla97C01G014250 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_6G483235 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 14  VDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVGDV 73
           VD  D+ +++  V +V ++C   ++I+     ++ G  E GPNGKTYTL LKLK KVGD 
Sbjct: 14  VDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDR 73

Query: 74  YVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           YVLKI  +  F P  G P  +SFE  +++++
Sbjct: 74  YVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]

BLAST of Cla97C01G014250 vs. TrEMBL
Match: tr|A0A0A0KFK8|A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MTLTGGSISGS---VSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNG 60
           MTL G  ISG    V +D+ D  + DL V+ V  +C    +I+A+   ++DG +E G NG
Sbjct: 1   MTL-GIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNG 60

Query: 61  KTYTLTLKLKVKVGDVYVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           KTYTL LK+KV++GD YV+KI  V +F P++G P  VSFEY+E+++I
Sbjct: 61  KTYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of Cla97C01G014250 vs. TrEMBL
Match: tr|A0A0A0KKQ8|A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 12  VSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVG 71
           V +D+ D  + DL V+ V  +C    +I+A+    +DG +E G NGKTY L LKLKV++G
Sbjct: 14  VPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVRIG 73

Query: 72  DVYVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           D YV+KI  V +F P++G P  VSFEY+E++SI
Sbjct: 74  DAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of Cla97C01G014250 vs. TrEMBL
Match: tr|A0A0A0KFL5|A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-12
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 5   GGSISGSVSVDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTL 64
           GGS+   V +D+ D  + DL V+ V  +C    +I+A+    +DG +E G NGKTY+  L
Sbjct: 8   GGSLQ-IVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 67

Query: 65  KLKVKVGDVYVLKIFRVVVFVPYIGIPYAVSFEYVE 100
           KLK+KVGD YV+K   V +F P+IG+P  VSFEY+E
Sbjct: 68  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of Cla97C01G014250 vs. TrEMBL
Match: tr|A0A0A0KIX9|A0A0A0KIX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 14  VDVLDKFVLDLAVKIVADYCNK-NRIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVGDV 73
           VD  D+ +++  V +V ++C   ++I+     ++ G  E GPNGKTYTL LKLK KVGD 
Sbjct: 14  VDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDR 73

Query: 74  YVLKIFRVVVFVPYIGIPYAVSFEYVEDVSI 104
           YVLKI  +  F P  G P  +SFE  +++++
Sbjct: 74  YVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

The following BLAST results are available for this feature:

BLAST of Cla97C01G014250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48338.1	8.8e-14	46.73	hypothetical protein Csa_6G483240 [Cucumis sativus]	[more]
KGN48336.1	4.4e-13	47.31	hypothetical protein Csa_6G483230 [Cucumis sativus]	[more]
KGN48343.1	8.3e-12	46.88	hypothetical protein Csa_6G483250 [Cucumis sativus]	[more]
KGN48337.1	1.1e-08	41.76	hypothetical protein Csa_6G483235 [Cucumis sativus]	[more]

BLAST of Cla97C01G014250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFK8\|A0A0A0KFK8_CUCSA	5.8e-14	46.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1	[more]
tr\|A0A0A0KKQ8\|A0A0A0KKQ8_CUCSA	2.9e-13	47.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1	[more]
tr\|A0A0A0KFL5\|A0A0A0KFL5_CUCSA	5.5e-12	46.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1	[more]
tr\|A0A0A0KIX9\|A0A0A0KIX9_CUCSA	7.4e-09	41.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1	[more]

BLAST of Cla97C01G014250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G014250 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G014250.1	Cla97C01G014250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G014250	Cla008423	Watermelon (97103) v1	wmwmbB244
Cla97C01G014250	Csa6G483230	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G014250	ClCG01G015290	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G014250	CSPI06G26250	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G014250	Cucsa.100780	Cucumber (Gy14) v1	cgywmbB127
Cla97C01G014250	CsGy6G025780	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G014250	CsaV3_6G041470	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G014250	Bhi03G001032	Wax gourd	wgowmbB399

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G014250	Silver-seed gourd	carwmbB0239
Cla97C01G014250	Silver-seed gourd	carwmbB0839
Cla97C01G014250	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G014250	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G014250	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G014250	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G014250	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G014250	Melon (DHL92) v3.6.1	medwmbB508
Cla97C01G014250	Melon (DHL92) v3.5.1	mewmbB516