Csa6G483230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G483230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 22095838 .. 22096430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAGTTAAGTAGAGATCATAGAAGTTTGTGAGAGAATTAGACTTATATATATTCAATATATATAACATATCAAATTAGCTTATAAGAAAGATGACTCTTGGAATCGGGATTGGTGGTGGCCTTCAAATTGTTCCATTGGATCTATCGGACAATACCCTTTGTGATTTACTTGTTCAGCATGTGATTAAGCACTGTCAGAGTGTACTTCAAATTGACGCCACCTTTGAAGGTTTTATAGATGGTTCGATTGAGATTGGGCTGAATGGCAAAACATATATCCTTAAGTTGAAGTTAAAGGTCAGAATTGGTGATGCTTATGTTGTTAAGATCGTTCTGGTTAAACTCTTTTTCCCATTCGTTGGCTTTCCCAGCGTTGTGTCTTTCGAGTATCTTGAAGAAATCAGCATCTAGAAACCATGAAATCATGCTATGGATAATGAAAATGGTGCTTTCTTATGCATCATTTCCATCTCTCTTACCTATCTATCAATAAATATGTAAAACTGGTCTCTCTTTAACAATGCAATAAGAGATGTTTTTATTTACAAAGTATATTCAAACCTCTTAACGTTGTCTCTTTTTTTTTTTTTT

mRNA sequence

ATGACTCTTGGAATCGGGATTGGTGGTGGCCTTCAAATTGTTCCATTGGATCTATCGGACAATACCCTTTGTGATTTACTTGTTCAGCATGTGATTAAGCACTGTCAGAGTGTACTTCAAATTGACGCCACCTTTGAAGGTTTTATAGATGGTTCGATTGAGATTGGGCTGAATGGCAAAACATATATCCTTAAGTTGAAGTTAAAGGTCAGAATTGGTGATGCTTATGTTGTTAAGATCGTTCTGGTTAAACTCTTTTTCCCATTCGTTGGCTTTCCCAGCGTTGTGTCTTTCGAGTATCTTGAAGAAATCAGCATCTAG

Coding sequence (CDS)

ATGACTCTTGGAATCGGGATTGGTGGTGGCCTTCAAATTGTTCCATTGGATCTATCGGACAATACCCTTTGTGATTTACTTGTTCAGCATGTGATTAAGCACTGTCAGAGTGTACTTCAAATTGACGCCACCTTTGAAGGTTTTATAGATGGTTCGATTGAGATTGGGCTGAATGGCAAAACATATATCCTTAAGTTGAAGTTAAAGGTCAGAATTGGTGATGCTTATGTTGTTAAGATCGTTCTGGTTAAACTCTTTTTCCCATTCGTTGGCTTTCCCAGCGTTGTGTCTTTCGAGTATCTTGAAGAAATCAGCATCTAG

Protein sequence

MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI*

Homology

[Close]

BLAST of Csa6G483230 vs. TrEMBL
Match: A0A0A0KKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of Csa6G483230 vs. TrEMBL
Match: A0A0A0KFK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.7e-48
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           MTLGIGI GGLQIVPLDLSDNTLCDLLVQHV+KHCQSVLQIDATFEG IDG IEIGLNGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           TY LKLK+KVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI+I
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of Csa6G483230 vs. TrEMBL
Match: A0A0A0KFL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-42
Identity = 82/102 (80.39%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           M++G+GIGG LQIVP+DLSDNTLCDLLVQHV+KHCQ+VLQIDAT+EGFIDGSIEIG+NGK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 103
           TY  KLKLK+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of Csa6G483230 vs. TrEMBL
Match: A0A0A0KIX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 12  QIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVR 71
           QI+P+D SD +L +  V  VI HCQS+ QID  FEG + G  E+G NGKTY L+LKLK +
Sbjct: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69

Query: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           +GD YV+KI ++K F P  G PS++SFE  +EI++
Sbjct: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]

BLAST of Csa6G483230 vs. NCBI nr
Match: gi|700193132|gb|KGN48336.1| (hypothetical protein Csa_6G483230 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]

BLAST of Csa6G483230 vs. NCBI nr
Match: gi|700193134|gb|KGN48338.1| (hypothetical protein Csa_6G483240 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 3.8e-48
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           MTLGIGI GGLQIVPLDLSDNTLCDLLVQHV+KHCQSVLQIDATFEG IDG IEIGLNGK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           TY LKLK+KVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEI+I
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]

BLAST of Csa6G483230 vs. NCBI nr
Match: gi|700193139|gb|KGN48343.1| (hypothetical protein Csa_6G483250 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-42
Identity = 82/102 (80.39%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60
           M++G+GIGG LQIVP+DLSDNTLCDLLVQHV+KHCQ+VLQIDAT+EGFIDGSIEIG+NGK
Sbjct: 1   MSVGMGIGGSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGK 60

Query: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLE 103
           TY  KLKLK+++GDAYV+K VLVK+FFPF+G PS+VSFEYLE
Sbjct: 61  TYSFKLKLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]

BLAST of Csa6G483230 vs. NCBI nr
Match: gi|700193133|gb|KGN48337.1| (hypothetical protein Csa_6G483235 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 12  QIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVR 71
           QI+P+D SD +L +  V  VI HCQS+ QID  FEG + G  E+G NGKTY L+LKLK +
Sbjct: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69

Query: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 107
           +GD YV+KI ++K F P  G PS++SFE  +EI++
Sbjct: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

The following BLAST results are available for this feature:

BLAST of Csa6G483230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKQ8_CUCSA	1.2e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483230 PE=4 SV=1	[more]
A0A0A0KFK8_CUCSA	2.7e-48	93.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483240 PE=4 SV=1	[more]
A0A0A0KFL5_CUCSA	1.7e-42	80.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483250 PE=4 SV=1	[more]
A0A0A0KIX9_CUCSA	1.2e-19	52.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483235 PE=4 SV=1	[more]

BLAST of Csa6G483230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193132\|gb\|KGN48336.1\|	1.7e-51	100.00	hypothetical protein Csa_6G483230 [Cucumis sativus]	[more]
gi\|700193134\|gb\|KGN48338.1\|	3.8e-48	93.40	hypothetical protein Csa_6G483240 [Cucumis sativus]	[more]
gi\|700193139\|gb\|KGN48343.1\|	2.4e-42	80.39	hypothetical protein Csa_6G483250 [Cucumis sativus]	[more]
gi\|700193133\|gb\|KGN48337.1\|	1.7e-19	52.63	hypothetical protein Csa_6G483235 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G483230.1	Csa6G483230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G483230	Cla008422	Watermelon (97103) v1	cuwmB502
Csa6G483230	MELO3C024616	Melon (DHL92) v3.5.1	cumeB508
Csa6G483230	ClCG01G015290	Watermelon (Charleston Gray)	cuwcgB432
Csa6G483230	MELO3C024616.2	Melon (DHL92) v3.6.1	cumedB487
Csa6G483230	Cla97C01G014250	Watermelon (97103) v2	cuwmbB412
Csa6G483230	Bhi03G001032	Wax gourd	cuwgoB622
Csa6G483230	CSPI06G26210	Wild cucumber (PI 183967)	cpicuB313
Csa6G483230	CsGy6G025780	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G483230	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G483230	Silver-seed gourd	carcuB0267
Csa6G483230	Silver-seed gourd	carcuB0826
Csa6G483230	Cucumber (Gy14) v1	cgycuB121
Csa6G483230	Cucurbita maxima (Rimu)	cmacuB681
Csa6G483230	Cucurbita moschata (Rifu)	cmocuB670
Csa6G483230	Cucurbita moschata (Rifu)	cmocuB865
Csa6G483230	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G483230	Cucurbita pepo (Zucchini)	cpecuB503