MELO3C023320 (gene) Melon (DHL92) v3.5.1

NameMELO3C023320
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSpectrin alpha chain, erythrocytic 1
Locationchr11 : 1406096 .. 1408220 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTCCCTCAAATCATACATAAGGAAGCTTCGTTTGGGTCTATGCTCTTAGGAAAAACAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAAGAAGACCCAACTTTGAAAAAACATATAAAAGTGGTCATATTAATTATTAAGGTTGTTTCTACTTTCTATCATATTTTTGGGAATCATGTTTCTTAAGTACAAGCTTAGCTTCATCTTCATCCTCCTCCTCTCAACCTCTTTTTTATCCTCCATTTGCATTGCAGGTTGGTTTCTTCTTTCTATGTCTCTTAATTTGTTTGTTTTAAATTTCACTAGACATTATATTCTTCAACCTAAAAGCAACAAAAATGAACTGTATCATCATGAAATTTTTTTAGAAAAACGTACCACGACCGCCATCTTTTCTAGTAGTGTTTGTTCATATGTAAGGAGTTTATTAGAAATATATGAAAAAACGCATGTTTTTAGTCGGTGGTAGGATTTATAGAATACATACACATTATCTTAAGTATATAAAGTGATAGTTAATTTAGTGTATCTTCTTGATTAATGCATATTTTCAAAAACTACTTCTTTATAGTATATATTACTTTGTTATTTTCATTCGATTTGAATTGTAGGTTATAAAATCAAAATGAACTTAATTCAAACATAATTAACATGTATTTTTTAATGAAATAATTAGATTTGTAATCGACGAGGAAAATGAACCGTAATGATTAGAACCATGTTAGTTTCTAAACAAAATATTATTAATTTGCATGCGTATACTATGTAAGTGTGGTGCGAATTAAGAATATAACTTTTATAGTTAATAAGTTTTGCTTTTTTTCTTCTTTATTTTCATTCTTTTTATTGGTAACTGAGCTGTTAACTTTTTTAATGGATGATTTTTAGTCCATAATGGTTTGGAATTGTTACAATAATGATCCAACACACTTTTTAATTCTTTAAAATCGATTTAGGGTTTTAATTCATATCATTAAAATTAAATAATTTTTACGGTTTCAAAATTGCTTACAAATATTAAAACGTATTTTTCAAGTTAAAATGATATGTGATATTCTTTTTCTTTATAGGACGACCATCTAAGTTGGTTCCTGAGGTTGTTGCTAACGGTGGAGTTGTGCATGAGGTTTGTATTTCTTAGTTTTCTTTTTAAAAATTTTAATTTTCTTTTGCTTAGTTTAGAATCAAATTAATGGGTTTACTCTACTTGAATATCATAATATAGTCTAATTAATCAGAGATCGCTTAAAAAAAATTGTTTGAGTTGTATTCTTAATGAAATAAGTATGTTCGTTAGGAGTAAAATTTATATAAAATGACTTAATTAATGTATAATAATAATCAGGTTAATTTTAATATGAATAATTGAAGTTGTGATCGAGTTGGGTAAATTATATATTAACAATATGACTTGAGAATTAAGTGGGTGTTTGGAATGTGTAGAAGTTTAATTTCGAGGTTGATCAATATCTCACCATGTTTTCTTCCTTGTCAGCCGATTTCAATTCGCAAGCTACCATAGCTCGTTGCTTCTGTCACTCAATTACACTAGATCTTCAATTTTAGAACACAATAATAAGTTTTCCTTGTGAATGTTTTCGTTGTTTTCTTTAAAAGAGAAAACTTGACTTTCATTTTCAAACGATTGAGAACCAAATGATTATTGAAGAATCAAACATGAGCAATAATTATTGTTCAGTAAAGTTTCGAACGTAATATATTTATCAGGATGCAAAGAGGAAGACAAGAGGTGATGAAATGGAAGACATCATCCATGAAAGACTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCAGCCCCAGCCTTTGTTAAGCCTCCTTTCAAGCTCATCCCCAACTGATAAGGGCAGAACAAATAAATATCATCACCAACATGGGAGTAACCTTATAAACATATATAAATAATAAGAAAAAAAATATCATCTGTTTCATATATATATATATAGTATAAGTATAATATATATGTATTAATCATATATAATATATTGTATAATATATGGTCATAGACTCACATATATATATATGAATATAAAGCCTTTGTAATGTTTTGCTTGAGTTACTAAGTACTATATATATATATATATATATATATATA

mRNA sequence

AATGTCCCTCAAATCATACATAAGGAAGCTTCGTTTGGGTCTATGCTCTTAGGAAAAACAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAAGAAGACCCAACTTTGAAAAAACATATAAAAGTGGTCATATTAATTATTAAGGTTGTTTCTACTTTCTATCATATTTTTGGGAATCATGTTTCTTAAGTACAAGCTTAGCTTCATCTTCATCCTCCTCCTCTCAACCTCTTTTTTATCCTCCATTTGCATTGCAGGACGACCATCTAAGTTGGTTCCTGAGGTTGTTGCTAACGGTGGAGTTGTGCATGAGGATGCAAAGAGGAAGACAAGAGGTGATGAAATGGAAGACATCATCCATGAAAGACTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCAGCCCCAGCCTTTGTTAAGCCTCCTTTCAAGCTCATCCCCAACTGATAAGGGCAGAACAAATAAATATCATCACCAACATGGGAGTAACCTTATAAACATATATAAATAATAAGAAAAAAAATATCATCTGTTTCATATATATATATATAGTATAAGTATAATATATATGTATTAATCATATATAATATATTGTATAATATATGGTCATAGACTCACATATATATATATGAATATAAAGCCTTTGTAATGTTTTGCTTGAGTTACTAAGTACTATATATATATATATATATATATATATA

Coding sequence (CDS)

ATGTTTCTTAAGTACAAGCTTAGCTTCATCTTCATCCTCCTCCTCTCAACCTCTTTTTTATCCTCCATTTGCATTGCAGGACGACCATCTAAGTTGGTTCCTGAGGTTGTTGCTAACGGTGGAGTTGTGCATGAGGATGCAAAGAGGAAGACAAGAGGTGATGAAATGGAAGACATCATCCATGAAAGACTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCAGCCCCAGCCTTTGTTAAGCCTCCTTTCAAGCTCATCCCCAACTGA

Protein sequence

MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIHERLLRVNTKDYGRYDPAPAFVKPPFKLIPN*
BLAST of MELO3C023320 vs. TrEMBL
Match: A0A0A0LJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.7e-40
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII 60
          MFLKYKLSFIFILLLSTSFLS+ICIAGRPSKLVPEVVA GGVVHED KRKTRG EME+II
Sbjct: 1  MFLKYKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRG-EMEEII 60

Query: 61 HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
          HERLLRVNTKDYGRYDP+PAFVKPPFKLIPN
Sbjct: 61 HERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of MELO3C023320 vs. TrEMBL
Match: M5VMD3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1

Query: 2  FLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIH 61
          F+ +    I  LL+S SFLS+   AGR SK V ++      + E+   +    +   IIH
Sbjct: 3  FMFFNKFSILFLLISASFLSASFAAGRSSKFVNKLAEEVDAIPEETLGRPLNHKEAAIIH 62

Query: 62 ERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
          ERLLR NT+DYGRYDPAPA VKPPFKLIPN
Sbjct: 63 ERLLRANTRDYGRYDPAPALVKPPFKLIPN 92

BLAST of MELO3C023320 vs. TrEMBL
Match: A0A061E6N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006837 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 10 IFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIHERLLRVNT 69
          + + LL+++FL S  +A RPSK V ++        ED    T        +HERLLR NT
Sbjct: 10 VLLFLLASAFLLSTSLAARPSKFVNKLAEEVDAAFEDGGEATS-------VHERLLRANT 69

Query: 70 KDYGRYDPAPAFVKPPFKLIPN 92
          KDYGRYDP+PA VKPPFKLIPN
Sbjct: 70 KDYGRYDPSPAIVKPPFKLIPN 84

BLAST of MELO3C023320 vs. TrEMBL
Match: G7LEJ0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_8g037800 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-13
Identity = 48/95 (50.53%), Postives = 57/95 (60.00%), Query Frame = 1

Query: 1  MFLKYKLSFIFIL----LLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEM 60
          MFLK K + +F+L    LL+TSF      AGR S  +     +   VHE   +    +E 
Sbjct: 4  MFLK-KFTLLFLLISGSLLTTSF------AGRASNFIRISNEDVNAVHEVTTKMAMNEEE 63

Query: 61 EDIIHERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
             IHERLLR NTKDYGRYDP+P F KPPFKLIPN
Sbjct: 64 VRSIHERLLRANTKDYGRYDPSPTFSKPPFKLIPN 91

BLAST of MELO3C023320 vs. TrEMBL
Match: V7ALQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-12
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1

Query: 8  SFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIHERLLRV 67
          +F  + LL ++ L S   A R SK++     +   + E   RK    E    IHER+LR 
Sbjct: 9  NFTLLFLLLSASLPSTSFAARRSKVMRNFTKDVNAIEEGTSRKALNKEEVSSIHERVLRA 68

Query: 68 NTKDYGRYDPAPAFVKPPFKLIPN 92
          NTKDYGRYDP+P+  KPPFKLIPN
Sbjct: 69 NTKDYGRYDPSPSLSKPPFKLIPN 92

BLAST of MELO3C023320 vs. TAIR10
Match: AT4G34600.1 (AT4G34600.1 unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 40/93 (43.01%), Postives = 48/93 (51.61%), Query Frame = 1

Query: 6  KLSFIFILLLSTSFLSSICIAGRPSKLV-------PEVVANGGVVHEDAKRKTRGDEMED 65
          KL FI  LL+S S  + +C AGR S L+       PEVV     +HE             
Sbjct: 9  KLGFIIFLLVSASAFA-LCSAGRSSILIYSQEDDHPEVVERR--IHE------------- 68

Query: 66 IIHERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
            HER+LR+N++DYG   P P  V+PPFKLIPN
Sbjct: 69 --HERILRMNSRDYGHSSPKPKLVRPPFKLIPN 83

BLAST of MELO3C023320 vs. TAIR10
Match: AT2G16385.1 (AT2G16385.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = 1

Query: 6  KLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIHERLL 65
          KL FIF+++ +++   S+  AGRPS  V          H+    +    E     HERLL
Sbjct: 10 KLGFIFMIVSASAL--SVSFAGRPSIFV----------HKKINLREEMVERSMHEHERLL 69

Query: 66 RVNTKDYGRYDPAPAFVKPPFKLIPN 92
          R+NTKDYG   P+P   +PPFKLIPN
Sbjct: 70 RMNTKDYGNNSPSPRLERPPFKLIPN 83

BLAST of MELO3C023320 vs. NCBI nr
Match: gi|659122106|ref|XP_008460971.1| (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

Query: 1  MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII 60
          MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII
Sbjct: 1  MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII 60

Query: 61 HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
          HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN
Sbjct: 61 HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 91

BLAST of MELO3C023320 vs. NCBI nr
Match: gi|778669410|ref|XP_011649242.1| (PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII 60
          MFLKYKLSFIFILLLSTSFLS+ICIAGRPSKLVPEVVA GGVVHED KRKTRG EME+II
Sbjct: 1  MFLKYKLSFIFILLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRG-EMEEII 60

Query: 61 HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
          HERLLRVNTKDYGRYDP+PAFVKPPFKLIPN
Sbjct: 61 HERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of MELO3C023320 vs. NCBI nr
Match: gi|645262827|ref|XP_008236940.1| (PREDICTED: uncharacterized protein LOC103335693 [Prunus mume])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 1

Query: 6  KLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIHERLL 65
          K S +F LL+S SFLS+   AGR SK V ++      + E+   K    +   IIHERLL
Sbjct: 8  KFSILF-LLISASFLSASFAAGRSSKFVNKLAKEVDAIPEETLGKPLNHKEAAIIHERLL 67

Query: 66 RVNTKDYGRYDPAPAFVKPPFKLIPN 92
          R NT+DYGRYDPAPA VKPPFKLIPN
Sbjct: 68 RANTRDYGRYDPAPALVKPPFKLIPN 92

BLAST of MELO3C023320 vs. NCBI nr
Match: gi|694395279|ref|XP_009372978.1| (PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri])

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-15
Identity = 53/91 (58.24%), Postives = 58/91 (63.74%), Query Frame = 1

Query: 1   MFLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDII 60
           MFLK K S +F LL+S SF SS   AGR SK V ++        E+   K    E    I
Sbjct: 23  MFLK-KFSILF-LLISASFFSSSFAAGRKSKFVNKLAKEVDANTEEMLGKPLNHEEVARI 82

Query: 61  HERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
           HERLLR NTKDYGRYDPAPA VKPPFKLIPN
Sbjct: 83  HERLLRANTKDYGRYDPAPALVKPPFKLIPN 111

BLAST of MELO3C023320 vs. NCBI nr
Match: gi|595794117|ref|XP_007200807.1| (hypothetical protein PRUPE_ppa025448mg [Prunus persica])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 1

Query: 2  FLKYKLSFIFILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDIIH 61
          F+ +    I  LL+S SFLS+   AGR SK V ++      + E+   +    +   IIH
Sbjct: 3  FMFFNKFSILFLLISASFLSASFAAGRSSKFVNKLAEEVDAIPEETLGRPLNHKEAAIIH 62

Query: 62 ERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 92
          ERLLR NT+DYGRYDPAPA VKPPFKLIPN
Sbjct: 63 ERLLRANTRDYGRYDPAPALVKPPFKLIPN 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LJ22_CUCSA8.7e-4093.41Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1[more]
M5VMD3_PRUPE2.6e-1551.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1[more]
A0A061E6N6_THECC1.1e-1351.22Uncharacterized protein OS=Theobroma cacao GN=TCM_006837 PE=4 SV=1[more]
G7LEJ0_MEDTR9.1e-1350.53Transmembrane protein, putative OS=Medicago truncatula GN=MTR_8g037800 PE=2 SV=1[more]
V7ALQ6_PHAVU2.6e-1246.43Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G34600.11.7e-1043.01 unknown protein[more]
AT2G16385.12.2e-1041.86 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659122106|ref|XP_008460971.1|4.9e-44100.00PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo][more]
gi|778669410|ref|XP_011649242.1|1.3e-3993.41PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus][more]
gi|645262827|ref|XP_008236940.1|2.1e-1555.81PREDICTED: uncharacterized protein LOC103335693 [Prunus mume][more]
gi|694395279|ref|XP_009372978.1|2.8e-1558.24PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri][more]
gi|595794117|ref|XP_007200807.1|3.7e-1551.11hypothetical protein PRUPE_ppa025448mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023320T1MELO3C023320T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35290FAMILY NOT NAMEDcoord: 1..91
score: 1.5
NoneNo IPR availablePANTHERPTHR35290:SF2SUBFAMILY NOT NAMEDcoord: 1..91
score: 1.5

The following gene(s) are paralogous to this gene:

None