CmaCh20G008300 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G008300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAspartate carbamoyltransferase
LocationCma_Chr20 : 3954348 .. 3956751 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATAACTCATACATAAGAGGAAGCATCATTTGGTTCTATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTGGGTTTTTCGACGCTTTTGCTTATTTGAAAGTGTCAGAGATTTCGTAATTGTAGTACATGTTTCGTTATGAACTCAACCTCGTTTTTATCCACCATCTGTACTGCAAGTGGGCTTTCGATGTTTTCATTTATTTTGGAAGTGCTAAAGGTTTCTAAGTCGTACATGTTTCATTGTGAACTCGCCCATGTTTTTATCTACCATTTAGCATGTGGGTTTTCGACGTTTTTGTTTATTTTGTGATTTTGTGTAACAGTCAAAACTCACCGCTAGTAGATATTGTTTGTTTTATTCCGTTATGTATCGACGTTAGCCTCACGATTTTAAAACGCGTTTATTATGGAGAGATTTCCACACTCTTATCTATTAACGATGAGCTTGAGCTGTTACAAATGATATAGAGCCAGACACCGGGCGGTATGCCAATATAGGTGGATTGTGAGATCCCATGTTAGTTAGAGAGGGGAATGTGAAAATCTCTCCCTAGCAAACGTGTTTTAAAACTATAAGGCTAACAACGATACGTAATGAGCTAAAACGGACAATATTTACTAGTGGTAGACTTGGAATGTTATATTTTGAATATAACTAGACTGATTTCAATTATTTATCGAAACGACTCTCAAATATGTCACGTTATACAATTTCTAAGCCCAAACCAACTCGAGGTGTTAATTGAAAGTGTATAGACAATTTTTAAAAGCTACTTTGATTTGGATTGTTACTTTTTCATTTGAGAAAAAAGTAAAGCAAAACAAAAACAAAAATTTATTCAAACATGTTGTTTCCGACAACTAAAGAGTATCTTATTTGCATGCGTAGTATATGTTATTCGTGTAAATTAAGGAGAGAAATAAGGTCTGTTCTTTTTTGAAAAAATTACTGATTTTTTAATGTAAAAGTAAAAGTAAGTTCTTTATAAGCACTTTTTATTTTTTCTTGTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGTTTGTATTTATATTAAATCCAAAGTTTAATTGTTTGGGTAACCCACTTGAGTGACTCGTAACGAAATAGTTGTGTTCGGGATGGTTGAAAGTTATATGAAACTTATTTGTGATAATTTGGTCTAAAATTTTTGTTATGAATAACCAAAATTATACCGTGAAGGTGTAAGTTAGATTAATGGTATGACATGACAAATGGATGTTTTGAAACGGGTAGGTCTAAAGCCTGAGTAGTAAGTCTCTCGCTCGGTTATAGAAACCCTAACGTTCAACGGGCCTCTTTTTGTCAATATTTTTGTTGTTTTAGATTGGAGGTAGAAACACATCTAAATTTTTAATCAAAATTAAAAGATAAAAACTACATCTTTTTAGATTTTAAAGATCGACGTGGTTTTATGAAAACATTGATATAAGGTAGATAATAAAAACGAAACTTGGTAGTAGGTAGGGGTGTTCATATGACTCAAGAGCCTGATCAACTCTGAAGGTTGATTTTGGTTAGATTTCTTCTTTTTAGATTTGGGTTTGATTGGATTTTTGGAAAACTGAAAAAATTCGAGTAAGTTCACGGATTGACATTATTTTGGTCAGGTCAATCCAACTCAAGTGGGTTGGGTTTGGTTCGATTGGGAACTCTATTCGGGTTATTATGGTCATCAACCCAACCAACTCGAAATTTTGTGTTGGTTCAAAAAACAATTTCCAACCCAATTTGTGTATACTCGTATCGATAAAAGTCGTATTTATAAGCTTAAATTTCAAAAACCATATATTTATGAGATTACCCAAACCCTAACTAACTTCGATAAAGCTTTGAACTTGATCATCAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGGGAAAAAAAACAAAAGAATCCACCACCAATATGGGCTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATATTATATGTATAATATATATAGTATATACTATGGTCACAGACTTAGATATATATATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATTTTGGAATAGGTTACCTTATCATTATAGTAG

mRNA sequence

TCTATAACTCATACATAAGAGGAAGCATCATTTGGTTCTATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGGGAAAAAAAACAAAAGAATCCACCACCAATATGGGCTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATATTATATGTATAATATATATAGTATATACTATGGTCACAGACTTAGATATATATATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATTTTGGAATAGGTTACCTTATCATTATAGTAG

Coding sequence (CDS)

ATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAA

Protein sequence

MLFGKTRRRRRKTYFEKHSQIIIKVVSIILGIMFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0A0LJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 1

Query: 33  MFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED-V 92
           MF KYKL F+F  LLLSTSF STICIAGRPSKLV EVV   GVVHE  KR TR EME+ +
Sbjct: 1   MFLKYKLSFIFI-LLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRGEMEEII 60

Query: 93  HERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
           HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Sbjct: 61  HERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0S3S8R9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-13
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 41  FVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRV 100
           F+  FLL+S SF S    A R SK +      V  + EG  RK   ++E+  +HERLLR 
Sbjct: 10  FILLFLLISASFLSP-SFAARRSKDIRNFTKDVNAIQEGTPRKALNKEEVRSIHERLLRA 69

Query: 101 NTKDYGRYDPSPSFVKPPFKLIPN 121
           NTKDYGRYDPSPS  KPPFKLIPN
Sbjct: 70  NTKDYGRYDPSPSLSKPPFKLIPN 92

BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0L9V2J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-13
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 41  FVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRV 100
           F+  FLL+S SF S    A R SK +      V  + EG  RK   ++E+  +HERLLR 
Sbjct: 10  FILLFLLISASFLSP-SFAARRSKDIRNFTKDVNAIQEGTPRKALNKEEVRSIHERLLRA 69

Query: 101 NTKDYGRYDPSPSFVKPPFKLIPN 121
           NTKDYGRYDPSPS  KPPFKLIPN
Sbjct: 70  NTKDYGRYDPSPSLSKPPFKLIPN 92

BLAST of CmaCh20G008300 vs. TrEMBL
Match: V7ALQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1

Query: 41  FVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRV 100
           F   FLLLS S  ST   A R SK++      V  + EG  RK   ++E+  +HER+LR 
Sbjct: 10  FTLLFLLLSASLPST-SFAARRSKVMRNFTKDVNAIEEGTSRKALNKEEVSSIHERVLRA 69

Query: 101 NTKDYGRYDPSPSFVKPPFKLIPN 121
           NTKDYGRYDPSPS  KPPFKLIPN
Sbjct: 70  NTKDYGRYDPSPSLSKPPFKLIPN 92

BLAST of CmaCh20G008300 vs. TrEMBL
Match: M5VMD3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-12
Identity = 49/95 (51.58%), Postives = 58/95 (61.05%), Query Frame = 1

Query: 30  LGIMFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVH---EVVNGVVHEGRKRT-TRDE 89
           +G MFF     F   FLL+S SF S    AGR SK V+   E V+ +  E   R     E
Sbjct: 1   MGFMFFNK---FSILFLLISASFLSASFAAGRSSKFVNKLAEEVDAIPEETLGRPLNHKE 60

Query: 90  MEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
              +HERLLR NT+DYGRYDP+P+ VKPPFKLIPN
Sbjct: 61  AAIIHERLLRANTRDYGRYDPAPALVKPPFKLIPN 92

BLAST of CmaCh20G008300 vs. TAIR10
Match: AT2G16385.1 (AT2G16385.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1

Query: 38  KLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVN 97
           KLGF+F  +++S S  S +  AGRPS  VH+ +N      R+      M + HERLLR+N
Sbjct: 10  KLGFIF--MIVSASALS-VSFAGRPSIFVHKKINL-----REEMVERSMHE-HERLLRMN 69

Query: 98  TKDYGRYDPSPSFVKPPFKLIPN 121
           TKDYG   PSP   +PPFKLIPN
Sbjct: 70  TKDYGNNSPSPRLERPPFKLIPN 83

BLAST of CmaCh20G008300 vs. TAIR10
Match: AT4G34600.1 (AT4G34600.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1

Query: 30  LGIMFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTT 89
           +G++    KLGF+ F L+ +++F   +C AGR S L++       EVV   +HE      
Sbjct: 1   MGLLPLVKKLGFIIFLLVSASAF--ALCSAGRSSILIYSQEDDHPEVVERRIHE------ 60

Query: 90  RDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
                  HER+LR+N++DYG   P P  V+PPFKLIPN
Sbjct: 61  -------HERILRMNSRDYGHSSPKPKLVRPPFKLIPN 83

BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|778669410|ref|XP_011649242.1| (PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 1

Query: 33  MFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED-V 92
           MF KYKL F+F  LLLSTSF STICIAGRPSKLV EVV   GVVHE  KR TR EME+ +
Sbjct: 1   MFLKYKLSFIFI-LLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRGEMEEII 60

Query: 93  HERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
           HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Sbjct: 61  HERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|659122106|ref|XP_008460971.1| (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27
Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 1

Query: 33  MFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED- 92
           MF KYKL F+F  LLLSTSF S+ICIAGRPSKLV EVV   GVVHE  KR TR DEMED 
Sbjct: 1   MFLKYKLSFIFI-LLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMEDI 60

Query: 93  VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
           +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Sbjct: 61  IHERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 91

BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|1021556140|ref|XP_016169461.1| (PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1

Query: 45  FLLLSTSFFSTICIAGRPSKLVHEVVNGV--VHEGRKRTTRDEMEDVHERLLRVNTKDYG 104
           FLL+S S FST   AGR S+ +++V   V  + EG      +E+  +HERLLR NT+DYG
Sbjct: 14  FLLISVSLFST-SFAGRRSEFMNKVAADVSAIQEGTSVNEEEEVSIIHERLLRANTRDYG 73

Query: 105 RYDPSPSFVKPPFKLIPN 121
           RYDPSP+F KPPFKLIPN
Sbjct: 74  RYDPSPTFSKPPFKLIPN 90

BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|694395279|ref|XP_009372978.1| (PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1

Query: 33  MFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGVVHEGR----KRTTRDEMED 92
           M F +   F   FLL+S SFFS+   AGR SK V+++   V         K    +E+  
Sbjct: 20  MAFMFLKKFSILFLLISASFFSSSFAAGRKSKFVNKLAKEVDANTEEMLGKPLNHEEVAR 79

Query: 93  VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
           +HERLLR NTKDYGRYDP+P+ VKPPFKLIPN
Sbjct: 80  IHERLLRANTKDYGRYDPAPALVKPPFKLIPN 111

BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|658058319|ref|XP_008364964.1| (PREDICTED: uncharacterized protein LOC103428626 [Malus domestica])

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1

Query: 33  MFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGVVHEGR----KRTTRDEMED 92
           M F +   F   FLL+S SFFS+   AGR SK V+++   V         K    +E+  
Sbjct: 20  MAFMFLKMFSILFLLISASFFSSSFAAGRKSKFVNKLAKEVDANTEEMLGKPLNHEEVAR 79

Query: 93  VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 121
           +HERLLR NTKDYGRYDP+P+ VKPPFKLIPN
Sbjct: 80  IHERLLRSNTKDYGRYDPAPALVKPPFKLIPN 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ22_CUCSA2.0e-2880.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1[more]
A0A0S3S8R9_PHAAN6.9e-1354.76Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=... [more]
A0A0L9V2J1_PHAAN6.9e-1354.76Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1[more]
V7ALQ6_PHAVU2.6e-1254.76Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1[more]
M5VMD3_PRUPE3.4e-1251.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G16385.15.3e-1249.40 unknown protein[more]
AT4G34600.12.6e-1139.80 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778669410|ref|XP_011649242.1|2.9e-2880.22PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus][more]
gi|659122106|ref|XP_008460971.1|1.9e-2779.35PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo][more]
gi|1021556140|ref|XP_016169461.1|1.5e-1356.41PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis][more]
gi|694395279|ref|XP_009372978.1|2.0e-1351.09PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri][more]
gi|658058319|ref|XP_008364964.1|4.5e-1351.09PREDICTED: uncharacterized protein LOC103428626 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G008300.1CmaCh20G008300.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35290FAMILY NOT NAMEDcoord: 33..120
score: 5.2
NoneNo IPR availablePANTHERPTHR35290:SF2SUBFAMILY NOT NAMEDcoord: 33..120
score: 5.2

The following gene(s) are paralogous to this gene:

None