CmaCh20G008300 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTATAACTCATACATAAGAGGAAGCATCATTTGGTTCTATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTGGGTTTTTCGACGCTTTTGCTTATTTGAAAGTGTCAGAGATTTCGTAATTGTAGTACATGTTTCGTTATGAACTCAACCTCGTTTTTATCCACCATCTGTACTGCAAGTGGGCTTTCGATGTTTTCATTTATTTTGGAAGTGCTAAAGGTTTCTAAGTCGTACATGTTTCATTGTGAACTCGCCCATGTTTTTATCTACCATTTAGCATGTGGGTTTTCGACGTTTTTGTTTATTTTGTGATTTTGTGTAACAGTCAAAACTCACCGCTAGTAGATATTGTTTGTTTTATTCCGTTATGTATCGACGTTAGCCTCACGATTTTAAAACGCGTTTATTATGGAGAGATTTCCACACTCTTATCTATTAACGATGAGCTTGAGCTGTTACAAATGATATAGAGCCAGACACCGGGCGGTATGCCAATATAGGTGGATTGTGAGATCCCATGTTAGTTAGAGAGGGGAATGTGAAAATCTCTCCCTAGCAAACGTGTTTTAAAACTATAAGGCTAACAACGATACGTAATGAGCTAAAACGGACAATATTTACTAGTGGTAGACTTGGAATGTTATATTTTGAATATAACTAGACTGATTTCAATTATTTATCGAAACGACTCTCAAATATGTCACGTTATACAATTTCTAAGCCCAAACCAACTCGAGGTGTTAATTGAAAGTGTATAGACAATTTTTAAAAGCTACTTTGATTTGGATTGTTACTTTTTCATTTGAGAAAAAAGTAAAGCAAAACAAAAACAAAAATTTATTCAAACATGTTGTTTCCGACAACTAAAGAGTATCTTATTTGCATGCGTAGTATATGTTATTCGTGTAAATTAAGGAGAGAAATAAGGTCTGTTCTTTTTTGAAAAAATTACTGATTTTTTAATGTAAAAGTAAAAGTAAGTTCTTTATAAGCACTTTTTATTTTTTCTTGTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGTTTGTATTTATATTAAATCCAAAGTTTAATTGTTTGGGTAACCCACTTGAGTGACTCGTAACGAAATAGTTGTGTTCGGGATGGTTGAAAGTTATATGAAACTTATTTGTGATAATTTGGTCTAAAATTTTTGTTATGAATAACCAAAATTATACCGTGAAGGTGTAAGTTAGATTAATGGTATGACATGACAAATGGATGTTTTGAAACGGGTAGGTCTAAAGCCTGAGTAGTAAGTCTCTCGCTCGGTTATAGAAACCCTAACGTTCAACGGGCCTCTTTTTGTCAATATTTTTGTTGTTTTAGATTGGAGGTAGAAACACATCTAAATTTTTAATCAAAATTAAAAGATAAAAACTACATCTTTTTAGATTTTAAAGATCGACGTGGTTTTATGAAAACATTGATATAAGGTAGATAATAAAAACGAAACTTGGTAGTAGGTAGGGGTGTTCATATGACTCAAGAGCCTGATCAACTCTGAAGGTTGATTTTGGTTAGATTTCTTCTTTTTAGATTTGGGTTTGATTGGATTTTTGGAAAACTGAAAAAATTCGAGTAAGTTCACGGATTGACATTATTTTGGTCAGGTCAATCCAACTCAAGTGGGTTGGGTTTGGTTCGATTGGGAACTCTATTCGGGTTATTATGGTCATCAACCCAACCAACTCGAAATTTTGTGTTGGTTCAAAAAACAATTTCCAACCCAATTTGTGTATACTCGTATCGATAAAAGTCGTATTTATAAGCTTAAATTTCAAAAACCATATATTTATGAGATTACCCAAACCCTAACTAACTTCGATAAAGCTTTGAACTTGATCATCAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGGGAAAAAAAACAAAAGAATCCACCACCAATATGGGCTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATATTATATGTATAATATATATAGTATATACTATGGTCACAGACTTAGATATATATATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATTTTGGAATAGGTTACCTTATCATTATAGTAG TCTATAACTCATACATAAGAGGAAGCATCATTTGGTTCTATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGGGAAAAAAAACAAAAGAATCCACCACCAATATGGGCTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATATTATATGTATAATATATATAGTATATACTATGGTCACAGACTTAGATATATATATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATTTTGGAATAGGTTACCTTATCATTATAGTAG ATGCTCTTTGGAAAAACAAGAAGAAGAAGAAGAAAGACCTACTTTGAAAAACACTCACAAATCATCATTAAGGTTGTTTCTATCATATTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCTTCTTCTTCCTCCTCCTCTCGACCTCGTTTTTCTCTACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGATGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAA MLFGKTRRRRRKTYFEKHSQIIIKVVSIILGIMFFKYKLGFVFFFLLLSTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0A0LJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.0e-28 Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0S3S8R9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.9e-13 Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TrEMBL
Match: A0A0L9V2J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.9e-13 Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TrEMBL
Match: V7ALQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12 Identity = 46/84 (54.76%), Postives = 54/84 (64.29%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TrEMBL
Match: M5VMD3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025448mg PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 3.4e-12 Identity = 49/95 (51.58%), Postives = 58/95 (61.05%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TAIR10
Match: AT2G16385.1 (AT2G16385.1 unknown protein) HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
BLAST of CmaCh20G008300 vs. TAIR10
Match: AT4G34600.1 (AT4G34600.1 unknown protein) HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11 Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|778669410|ref|XP_011649242.1| (PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus]) HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28 Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 1
BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|659122106|ref|XP_008460971.1| (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo]) HSP 1 Score: 130.6 bits (327), Expect = 1.9e-27 Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 1
BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|1021556140|ref|XP_016169461.1| (PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis]) HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|694395279|ref|XP_009372978.1| (PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri]) HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13 Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1
BLAST of CmaCh20G008300 vs. NCBI nr
Match: gi|658058319|ref|XP_008364964.1| (PREDICTED: uncharacterized protein LOC103428626 [Malus domestica]) HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13 Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |