CmoCh20G008390 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGGTTCTATGCTCTTTGGAAAAACAAGAACAAGAAGAAAGACCATCATTAAGGTTGTTTCTATCATACTTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTGGGTTTTTCGATGCTTTTGCTTATTTGAAAGTGTCAGAGATTTTGTAATTGTACATGTTTCGTTTTGAACTCGACCTCGTTTTTATCCACCATCTGTATTGCAGGTGGGTTTTCGATGTTTTCATTTATTTTGAAAGTGTTGAAGGTTTCTAAGTCGTACGTGTTTCATTGTGAACTTGACCCTGTTTTTATCCACCATTTACACTGCATGTGGGTTTTCAACGTTTTCGTTTATTTTCAAAGATTTCTAAATCGTACATGTTTCAAAAGGGATTTTGTGTTTACAGTCAAAATCCACGGCTAGTAGATATTGTCTGTTTTAACTCGTTATGTATTAACATTAGCCTCACAGTTTGAAAACACATCTCCTATTGAGAGGTTTCCACACTCTTATCTACTAGCGGTACGGTTGAGCTGTTACAAATGATATCAGAGCTAGACACTGCGCGGTACGCCAATATGAGTGGATTGTGAGATCCCACATTAGTTGGAAAGGGGAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTCCCTAGTAACGTTTTAAAACTATGAAGCTAATGACGATACATAACGGGCAAAAACAGACAATATTTACTAGTAGTAGACTTGGACGGTTACATTTTGAATATGGCAAGACTAATTTCAATTATTTATCAAAATCGCTCTCAAATATGTCACGTTATACACTTTCTAAATCCAAACCAACTCGAGGTGTTAATCGAAAGTGTATCGACCATTTTTAAAAGCTACTTCACGATCCATATTATTTTTATCTATTTTTCAAAATTTTATTCAAACATGTTGTTTCCGACAGCTAAAGAGAATCTTATTTGCATGCGTAGTATATGTTATTCGTGTAAATTAAGGAGAGAAATAAGGTCTGTTCTTTTTATAAAAAAATTACTGATTTTTAAATGTAAAAAGTAAAAGTAATTTCTTTATAAGCACTTTTTCGTTTTTTTTTTTTTTCCTTGTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGTTTGTATTTATATTAAATCCAAAGTTTAATTGTTTGGGTATCCCACTTGAGTGACTCGTAATGAAATAGTTGTGTTCGTGTAGATGGTTGAAAGTTGTATGAAACTTATTTGTGATAATTTGGTCTATTTTGTTATGAATAACCAAAATTATACCGTGTAGGTGTAAGTTAGATTAACGGTATGACTTGAAAAATGGATGTTTTGAAACGGGTAGGTTTGAAGTCTGAGTAGTAAGTCTCTCGCTCGATTATAGAAACCCTAACGTTCAACAGGCCTCTTTTTGTCAATATTTTTGTTGTTTTAGATTGGGGTAGAAACACATCTAAATTTTTAATCAAAATTTAAAGACAAAAACTATATCTTTTTAGATTTTAAGATCGAACGTGGTTTTATGAAAACATTGATATAAGGTGGATAATAAAAATGAAACTTGGTAGTAGGTAAGGGTGTTCATATGACTCGAGAACATGACCAACTTAAACTGAAGGTTGGATTTGGTTAGATTTCTTCTTTTTCGATTTGGGTTTGATTGGATTTTTGGAAAACTGAAAAAATTCGAGTAATTTCACGAATTGACATTATTTTGGTTAGGTCAACCCAACCCAACGAGTTGAGTTGGGTTCGATTGTGAGCTCTATTCGAGTTTTTATGGTCTATCAAGTCAACCAACTCGAAATTTTGGGTTGATCCAAAAAATTTCTCCAACCCAATTTGTATATACTCGTATCGTAGAAGCCGTGTTTATAAGCTTAAATTTCAAAAACCCTATGTTTATGAGATGACCCAAACCCTAACTAACTTCGATAAAACTTTGAACTTGATCATCAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGAGGCAAAAGAATCCATCACCAATATGGACTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATAGTATATGTATAATATATATAGTATATAATATGGTCACAGACTTAGATATATATATATATATATGTATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATGTTTCGATGTACTTTAATATACTATTTTTAATACTATTTTGGTCTTGATTTCGC TTGGTTCTATGCTCTTTGGAAAAACAAGAACAAGAAGAAAGACCATCATTAAGGTTGTTTCTATCATACTTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGAGGCAAAAGAATCCATCACCAATATGGACTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATAGTATATGTATAATATATATAGTATATAATATGGTCACAGACTTAGATATATATATATATATATGTATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATGTTTCGATGTACTTTAATATACTATTTTTAATACTATTTTGGTCTTGATTTCGC ATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAA
BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0A0LJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 8.2e-27 Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A061E6N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006837 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13 Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0L9V2J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12 Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0S3S8R9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12 Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TrEMBL
Match: V7ALQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TAIR10
Match: AT2G16385.1 (AT2G16385.1 unknown protein) HSP 1 Score: 66.6 bits (161), Expect = 8.7e-12 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
BLAST of CmoCh20G008390 vs. TAIR10
Match: AT4G34600.1 (AT4G34600.1 unknown protein) HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11 Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|778669410|ref|XP_011649242.1| (PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus]) HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26 Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 1
BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|659122106|ref|XP_008460971.1| (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo]) HSP 1 Score: 124.8 bits (312), Expect = 7.6e-26 Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 1
BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|590685474|ref|XP_007042112.1| (Uncharacterized protein TCM_006837 [Theobroma cacao]) HSP 1 Score: 81.3 bits (199), Expect = 9.7e-13 Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|1021556140|ref|XP_016169461.1| (PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis]) HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12 Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|694395279|ref|XP_009372978.1| (PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri]) HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12 Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |