CmoCh20G008390 (gene) Cucurbita moschata (Rifu)

NameCmoCh20G008390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr20 : 4199239 .. 4201656 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTTCTATGCTCTTTGGAAAAACAAGAACAAGAAGAAAGACCATCATTAAGGTTGTTTCTATCATACTTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTGGGTTTTTCGATGCTTTTGCTTATTTGAAAGTGTCAGAGATTTTGTAATTGTACATGTTTCGTTTTGAACTCGACCTCGTTTTTATCCACCATCTGTATTGCAGGTGGGTTTTCGATGTTTTCATTTATTTTGAAAGTGTTGAAGGTTTCTAAGTCGTACGTGTTTCATTGTGAACTTGACCCTGTTTTTATCCACCATTTACACTGCATGTGGGTTTTCAACGTTTTCGTTTATTTTCAAAGATTTCTAAATCGTACATGTTTCAAAAGGGATTTTGTGTTTACAGTCAAAATCCACGGCTAGTAGATATTGTCTGTTTTAACTCGTTATGTATTAACATTAGCCTCACAGTTTGAAAACACATCTCCTATTGAGAGGTTTCCACACTCTTATCTACTAGCGGTACGGTTGAGCTGTTACAAATGATATCAGAGCTAGACACTGCGCGGTACGCCAATATGAGTGGATTGTGAGATCCCACATTAGTTGGAAAGGGGAACAAAACATTTCTTATAAGAGTGTGAAAATCTCTCCCTAGTAACGTTTTAAAACTATGAAGCTAATGACGATACATAACGGGCAAAAACAGACAATATTTACTAGTAGTAGACTTGGACGGTTACATTTTGAATATGGCAAGACTAATTTCAATTATTTATCAAAATCGCTCTCAAATATGTCACGTTATACACTTTCTAAATCCAAACCAACTCGAGGTGTTAATCGAAAGTGTATCGACCATTTTTAAAAGCTACTTCACGATCCATATTATTTTTATCTATTTTTCAAAATTTTATTCAAACATGTTGTTTCCGACAGCTAAAGAGAATCTTATTTGCATGCGTAGTATATGTTATTCGTGTAAATTAAGGAGAGAAATAAGGTCTGTTCTTTTTATAAAAAAATTACTGATTTTTAAATGTAAAAAGTAAAAGTAATTTCTTTATAAGCACTTTTTCGTTTTTTTTTTTTTTCCTTGTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGTTTGTATTTATATTAAATCCAAAGTTTAATTGTTTGGGTATCCCACTTGAGTGACTCGTAATGAAATAGTTGTGTTCGTGTAGATGGTTGAAAGTTGTATGAAACTTATTTGTGATAATTTGGTCTATTTTGTTATGAATAACCAAAATTATACCGTGTAGGTGTAAGTTAGATTAACGGTATGACTTGAAAAATGGATGTTTTGAAACGGGTAGGTTTGAAGTCTGAGTAGTAAGTCTCTCGCTCGATTATAGAAACCCTAACGTTCAACAGGCCTCTTTTTGTCAATATTTTTGTTGTTTTAGATTGGGGTAGAAACACATCTAAATTTTTAATCAAAATTTAAAGACAAAAACTATATCTTTTTAGATTTTAAGATCGAACGTGGTTTTATGAAAACATTGATATAAGGTGGATAATAAAAATGAAACTTGGTAGTAGGTAAGGGTGTTCATATGACTCGAGAACATGACCAACTTAAACTGAAGGTTGGATTTGGTTAGATTTCTTCTTTTTCGATTTGGGTTTGATTGGATTTTTGGAAAACTGAAAAAATTCGAGTAATTTCACGAATTGACATTATTTTGGTTAGGTCAACCCAACCCAACGAGTTGAGTTGGGTTCGATTGTGAGCTCTATTCGAGTTTTTATGGTCTATCAAGTCAACCAACTCGAAATTTTGGGTTGATCCAAAAAATTTCTCCAACCCAATTTGTATATACTCGTATCGTAGAAGCCGTGTTTATAAGCTTAAATTTCAAAAACCCTATGTTTATGAGATGACCCAAACCCTAACTAACTTCGATAAAACTTTGAACTTGATCATCAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGAGGCAAAAGAATCCATCACCAATATGGACTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATAGTATATGTATAATATATATAGTATATAATATGGTCACAGACTTAGATATATATATATATATATGTATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATGTTTCGATGTACTTTAATATACTATTTTTAATACTATTTTGGTCTTGATTTCGC

mRNA sequence

TTGGTTCTATGCTCTTTGGAAAAACAAGAACAAGAAGAAAGACCATCATTAAGGTTGTTTCTATCATACTTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAAGAGGCAAAAGAATCCATCACCAATATGGACTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATAGTATATGTATAATATATATAGTATATAATATGGTCACAGACTTAGATATATATATATATATATGTATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATGTTTCGATGTACTTTAATATACTATTTTTAATACTATTTTGGTCTTGATTTCGC

Coding sequence (CDS)

ATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAA
BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0A0LJ22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.2e-27
Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 1

Query: 1  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED- 60
          MF KYKL F+  F  LL TSF STICIAGRPSKLV EVV   GVVHE  KR TR EME+ 
Sbjct: 1  MFLKYKLSFI--FILLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRGEMEEI 60

Query: 61 VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 90
          +HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Sbjct: 61 IHERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A061E6N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006837 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1

Query: 11 VVFFFLLLTSFFSTICIAGRPSKLVH---EVVNGVVHEGRKRTTRDEMEDVHERLLRVNT 70
          +V  FLL ++F  +  +A RPSK V+   E V+    +G + T+      VHERLLR NT
Sbjct: 9  IVLLFLLASAFLLSTSLAARPSKFVNKLAEEVDAAFEDGGEATS------VHERLLRANT 68

Query: 71 KDYGRYDPSPSFVKPPFKLIPN 90
          KDYGRYDPSP+ VKPPFKLIPN
Sbjct: 69 KDYGRYDPSPAIVKPPFKLIPN 84

BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0L9V2J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1

Query: 12 VFFFLLLTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRVNT 71
          +  FLL+++ F +   A R SK +      V  + EG  RK   ++E+  +HERLLR NT
Sbjct: 11 ILLFLLISASFLSPSFAARRSKDIRNFTKDVNAIQEGTPRKALNKEEVRSIHERLLRANT 70

Query: 72 KDYGRYDPSPSFVKPPFKLIPN 90
          KDYGRYDPSPS  KPPFKLIPN
Sbjct: 71 KDYGRYDPSPSLSKPPFKLIPN 92

BLAST of CmoCh20G008390 vs. TrEMBL
Match: A0A0S3S8R9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1

Query: 12 VFFFLLLTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRVNT 71
          +  FLL+++ F +   A R SK +      V  + EG  RK   ++E+  +HERLLR NT
Sbjct: 11 ILLFLLISASFLSPSFAARRSKDIRNFTKDVNAIQEGTPRKALNKEEVRSIHERLLRANT 70

Query: 72 KDYGRYDPSPSFVKPPFKLIPN 90
          KDYGRYDPSPS  KPPFKLIPN
Sbjct: 71 KDYGRYDPSPSLSKPPFKLIPN 92

BLAST of CmoCh20G008390 vs. TrEMBL
Match: V7ALQ6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-12
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 15 FLLLTSFFSTICIAGRPSKLVHEVVNGV--VHEG--RKRTTRDEMEDVHERLLRVNTKDY 74
          FLLL++   +   A R SK++      V  + EG  RK   ++E+  +HER+LR NTKDY
Sbjct: 14 FLLLSASLPSTSFAARRSKVMRNFTKDVNAIEEGTSRKALNKEEVSSIHERVLRANTKDY 73

Query: 75 GRYDPSPSFVKPPFKLIPN 90
          GRYDPSPS  KPPFKLIPN
Sbjct: 74 GRYDPSPSLSKPPFKLIPN 92

BLAST of CmoCh20G008390 vs. TAIR10
Match: AT2G16385.1 (AT2G16385.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 8.7e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1

Query: 6  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRV 65
          KLGF+    F+++++   ++  AGRPS  VH+ +N      R+      M + HERLLR+
Sbjct: 10 KLGFI----FMIVSASALSVSFAGRPSIFVHKKINL-----REEMVERSMHE-HERLLRM 69

Query: 66 NTKDYGRYDPSPSFVKPPFKLIPN 90
          NTKDYG   PSP   +PPFKLIPN
Sbjct: 70 NTKDYGNNSPSPRLERPPFKLIPN 83

BLAST of CmoCh20G008390 vs. TAIR10
Match: AT4G34600.1 (AT4G34600.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1

Query: 6  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDV 65
          KLGF++   FLL+++    +C AGR S L++       EVV   +HE             
Sbjct: 9  KLGFII---FLLVSASAFALCSAGRSSILIYSQEDDHPEVVERRIHE------------- 68

Query: 66 HERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 90
          HER+LR+N++DYG   P P  V+PPFKLIPN
Sbjct: 69 HERILRMNSRDYGHSSPKPKLVRPPFKLIPN 83

BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|778669410|ref|XP_011649242.1| (PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 71/92 (77.17%), Postives = 75/92 (81.52%), Query Frame = 1

Query: 1  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED- 60
          MF KYKL F+  F  LL TSF STICIAGRPSKLV EVV   GVVHE  KR TR EME+ 
Sbjct: 1  MFLKYKLSFI--FILLLSTSFLSTICIAGRPSKLVPEVVAKGGVVHEDGKRKTRGEMEEI 60

Query: 61 VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 90
          +HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Sbjct: 61 IHERLLRVNTKDYGRYDPSPAFVKPPFKLIPN 90

BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|659122106|ref|XP_008460971.1| (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-26
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 1

Query: 1  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED 60
          MF KYKL F+  F  LL TSF S+ICIAGRPSKLV EVV   GVVHE  KR TR DEMED
Sbjct: 1  MFLKYKLSFI--FILLLSTSFLSSICIAGRPSKLVPEVVANGGVVHEDAKRKTRGDEMED 60

Query: 61 -VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN 90
           +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Sbjct: 61 IIHERLLRVNTKDYGRYDPAPAFVKPPFKLIPN 91

BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|590685474|ref|XP_007042112.1| (Uncharacterized protein TCM_006837 [Theobroma cacao])

HSP 1 Score: 81.3 bits (199), Expect = 9.7e-13
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1

Query: 11 VVFFFLLLTSFFSTICIAGRPSKLVH---EVVNGVVHEGRKRTTRDEMEDVHERLLRVNT 70
          +V  FLL ++F  +  +A RPSK V+   E V+    +G + T+      VHERLLR NT
Sbjct: 9  IVLLFLLASAFLLSTSLAARPSKFVNKLAEEVDAAFEDGGEATS------VHERLLRANT 68

Query: 71 KDYGRYDPSPSFVKPPFKLIPN 90
          KDYGRYDPSP+ VKPPFKLIPN
Sbjct: 69 KDYGRYDPSPAIVKPPFKLIPN 84

BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|1021556140|ref|XP_016169461.1| (PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis])

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 6  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGV--VHEGRKRTTRDEMEDVHERLL 65
          K   +   F L+  S FST   AGR S+ +++V   V  + EG      +E+  +HERLL
Sbjct: 6  KFSILFCLFLLISVSLFST-SFAGRRSEFMNKVAADVSAIQEGTSVNEEEEVSIIHERLL 65

Query: 66 RVNTKDYGRYDPSPSFVKPPFKLIPN 90
          R NT+DYGRYDPSP+F KPPFKLIPN
Sbjct: 66 RANTRDYGRYDPSPTFSKPPFKLIPN 90

BLAST of CmoCh20G008390 vs. NCBI nr
Match: gi|694395279|ref|XP_009372978.1| (PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri])

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1

Query: 12  VFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGR----KRTTRDEMEDVHERLLRVNT 71
           + F L+  SFFS+   AGR SK V+++   V         K    +E+  +HERLLR NT
Sbjct: 30  ILFLLISASFFSSSFAAGRKSKFVNKLAKEVDANTEEMLGKPLNHEEVARIHERLLRANT 89

Query: 72  KDYGRYDPSPSFVKPPFKLIPN 90
           KDYGRYDP+P+ VKPPFKLIPN
Sbjct: 90  KDYGRYDPAPALVKPPFKLIPN 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ22_CUCSA8.2e-2777.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249780 PE=4 SV=1[more]
A0A061E6N6_THECC6.7e-1353.66Uncharacterized protein OS=Theobroma cacao GN=TCM_006837 PE=4 SV=1[more]
A0A0L9V2J1_PHAAN4.4e-1251.22Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g009500 PE=4 SV=1[more]
A0A0S3S8R9_PHAAN4.4e-1251.22Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G013100 PE=... [more]
V7ALQ6_PHAVU4.4e-1251.90Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G210100g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G16385.18.7e-1245.24 unknown protein[more]
AT4G34600.13.3e-1141.76 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778669410|ref|XP_011649242.1|1.2e-2677.17PREDICTED: uncharacterized protein LOC105434604 [Cucumis sativus][more]
gi|659122106|ref|XP_008460971.1|7.6e-2676.34PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo][more]
gi|590685474|ref|XP_007042112.1|9.7e-1353.66Uncharacterized protein TCM_006837 [Theobroma cacao][more]
gi|1021556140|ref|XP_016169461.1|2.8e-1250.00PREDICTED: uncharacterized protein LOC107612155 [Arachis ipaensis][more]
gi|694395279|ref|XP_009372978.1|2.8e-1251.22PREDICTED: uncharacterized protein LOC103962037 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008390.1CmoCh20G008390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35290FAMILY NOT NAMEDcoord: 10..89
score: 1.4
NoneNo IPR availablePANTHERPTHR35290:SF2SUBFAMILY NOT NAMEDcoord: 10..89
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G008390CmoCh02G003850Cucurbita moschata (Rifu)cmocmoB404