MELO3C023117 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023117
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S5
Location	chr8 : 15020665 .. 15022298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTGGGTTCCAGTCACCAAGCTTGGCCGTCTTGTCAAGGAAGGTAAGATTCAATCACTGGAGCAGATTTACCTCCACTCTCTCCCAATCAAGGAGCATCAGATCGTTGATACTCTCATTGGCCCTAGCCTCAAGGATGAGGTCATGAAGATCATGCCTGTGCAGAAACAGACCCGGGCTGGTCAAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCGACTGCTATTCGTGGCTCGATTATTTTGGCTAAGTTGTCCGTGATCCCTGTTAGGAGGGGTTACTGGGGTAACAAGATTGGTAAACCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTTGCTGGTATTGAGGATGTTTTCACTTCCTCAAGGGGATCCACAAAGACACTTGGAAACTTTGTGAAGGTATATATTGTAATATGTTGCAATGTCTGTATCATCTGTTCACTGGAATTTATGCTGTCTATTATCAATATAATATGTTGTGTTATCTCATTTCGGGCACTCTGAATTCAGATTTATACTTAGGCTCGGCTTGTGAAATCTTGAATAGCAGTCCATTCGTGGTTGATTATGGATATCGGGGTGTTTCTTTTGGATTTTTCTGTTTGTATGTGCATCCATTTTGCGGGATTTATTTGTGTTTTGTTTTTTGGCTTGTTACATTATTTTCTTGTTGAATTTTGTGGATAATTTCATCTGGATTAGTTGTATCTAAAGTAAACTACTGGGTTTTCTTTTGTAAGATACTAGGTTGAATGCATTTTCTAAATGCAATACAGTTTTGGTGTAATCGAGTTCATGTTTAGAATAATTAAATTAGAGAGTTTCAATTATAGTGAAATTGCATGCCAATAGACGGTGCATGAGAAACCGTTGTTGAAAGTTTGTTTCTCCTAAAATTGGTTTTAGTCACGCGAACATTTGACTTATGTGCTTTGCTATTTGTTTATCTTGAACTTTAACTGGAGTGTAAGATTTTTCATTCTGTTAGTTTGTAAGTCAGATTTGGTTTTTTCTGTTATTACAAGTGTTTTTTTTTGGCAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACTGTAAAGGCGTTGTTGTTGGAGGATGCCGAGAGGGTTGCTGCTTAAGTCTGCGTAGATTTGGTATGCTTTTGAATCGAAAAGAGAAGAATGTTTTTGTTAGGACAACTCTATAGTATATGCTTTTCAGTCTGAGTTCATTTACTTTCAAGGATAGTGTGTTATTTATTTCTTATGGGTACTTGACTCTGTTTTTTAATGTTTCTGAATTCAATGGCATAAAGCTTGATTTTGAATGCACTAATGATTCTTGAGAAGAAAATATTGCCTATCTTAAGATTAATGCACGAAGCTAAACTAAGAAAGAATTTCACAATGGGCATTAATGGTGATGAAG

mRNA sequence

GAAGTGGGTTCCAGTCACCAAGCTTGGCCGTCTTGTCAAGGAAGGTAAGATTCAATCACTGGAGCAGATTTACCTCCACTCTCTCCCAATCAAGGAGCATCAGATCGTTGATACTCTCATTGGCCCTAGCCTCAAGGATGAGGTCATGAAGATCATGCCTGTGCAGAAACAGACCCGGGCTGGTCAAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCGACTGCTATTCGTGGCTCGATTATTTTGGCTAAGTTGTCCGTGATCCCTGTTAGGAGGGGTTACTGGGGTAACAAGATTGGTAAACCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTTGCTGGTATTGAGGATGTTTTCACTTCCTCAAGGGGATCCACAAAGACACTTGGAAACTTTGTGAAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACTGTAAAGGCGTTGTTGTTGGAGGATGCCGAGAGGGTTGCTGCTTAAGTCTGCGTAGATTTGGTATGCTTTTGAATCGAAAAGAGAAGAATGTTTTTGTTAGGACAACTCTATAGTATATGCTTTTCAGTCTGAGTTCATTTACTTTCAAGGATAGTGTGTTATTTATTTCTTATGGGTACTTGACTCTGTTTTTTAATGTTTCTGAATTCAATGGCATAAAGCTTGATTTTGAATGCACTAATGATTCTTGAGAAGAAAATATTGCCTATCTTAAGATTAATGCACGAAGCTAAACTAAGAAAGAATTTCACAATGGGCATTAATGGTGATGAAG

Coding sequence (CDS)

ATGAAGATCATGCCTGTGCAGAAACAGACCCGGGCTGGTCAAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCGACGGTAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAAGAGGTGGCGACTGCTATTCGTGGCTCGATTATTTTGGCTAAGTTGTCCGTGATCCCTGTTAGGAGGGGTTACTGGGGTAACAAGATTGGTAAACCCCATACTGTTCCTTGCAAGGTCACCGGAAAGTGTGGCTCTGTCACCGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTTCCCAAGAAGGTGCTTCAATTTGCTGGTATTGAGGATGTTTTCACTTCCTCAAGGGGATCCACAAAGACACTTGGAAACTTTGTGAAGGCTACCTTTGATTGTCTATTGAAAACCTATGGTTTCCTGACACCCGAGTTCTGGAGGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGCACACCGATCTGTTGGCTAAACCGACTGTAAAGGCGTTGTTGTTGGAGGATGCCGAGAGGGTTGCTGCTTAA

Protein sequence

MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDAERVAA*

Homology

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BLAST of MELO3C023117 vs. Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 330.9 bits (847), Expect = 9.2e-90
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.2e-90
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-89
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 101 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 160

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 161 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 220

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLA 169
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD LA
Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268

[Close]

BLAST of MELO3C023117 vs. Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.8e-89
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLGVKCSKEVATAIRG+IILAKLSV+P+R
Sbjct: 92  MKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIR 151

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 152 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 211

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTD-LLAKPTVK 174
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF+KSP+QEHTD LL  P VK
Sbjct: 212 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPPGVK 265

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BLAST of MELO3C023117 vs. Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 9.8e-76
Identity = 134/169 (79.29%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           +KIMPVQKQTRAGQRTRFKAFV +GD NGHVGLGVKCSKEVATAIRG+IILAKLS+IPVR
Sbjct: 92  LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVR 151

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGI+D +TS+
Sbjct: 152 RGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSA 211

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAK 170
           RG T TLGNF KATFD + KTY +LTP+ W+ET FTKSP+QE TD LAK
Sbjct: 212 RGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260

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BLAST of MELO3C023117 vs. TrEMBL
Match: A0A0A0KZQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-99
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 87  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 146

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 147 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 206

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA
Sbjct: 207 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 266

Query: 181 ERVAA 186
           ER AA
Sbjct: 267 ERGAA 271

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BLAST of MELO3C023117 vs. TrEMBL
Match: E5GBY7_CUCME (40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 5.8e-99
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLED 
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 ERVAA 186
           +RV A
Sbjct: 265 DRVTA 269

[Close]

BLAST of MELO3C023117 vs. TrEMBL
Match: A0A0A0LFC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-98
Identity = 181/185 (97.84%), Postives = 183/185 (98.92%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLED 
Sbjct: 205 RGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 ERVAA 186
           +RV A
Sbjct: 265 DRVTA 269

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BLAST of MELO3C023117 vs. TrEMBL
Match: A0A059DI03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02370 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.0e-96
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 87  MKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 146

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 147 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 206

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTP+FWRETRFTKSPFQE+TD+LAKPT KAL+L+DA
Sbjct: 207 RGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDMLAKPTGKALILDDA 266

Query: 181 ERV 184
           ER+
Sbjct: 267 ERI 269

[Close]

BLAST of MELO3C023117 vs. TrEMBL
Match: A0A0J8B3V6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_004290 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.9e-94
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSVIPVR
Sbjct: 92  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR 151

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RG+WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 152 RGFWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 211

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTP+ W+ETRFTKSPFQEHTD L+KPT K  L+ED 
Sbjct: 212 RGSTKTLGNFVKATFDCLLKTYGFLTPDLWKETRFTKSPFQEHTDFLSKPTAKLTLIEDV 271

Query: 181 ERVAA 186
           ERV A
Sbjct: 272 ERVEA 276

[Close]

BLAST of MELO3C023117 vs. TAIR10
Match: AT1G58983.1 (AT1G58983.1 Ribosomal protein S5 family protein)

HSP 1 Score: 330.9 bits (847), Expect = 5.2e-91
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. TAIR10
Match: AT1G59359.1 (AT1G59359.1 Ribosomal protein S5 family protein)

HSP 1 Score: 330.9 bits (847), Expect = 5.2e-91
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. TAIR10
Match: AT1G58380.1 (AT1G58380.1 Ribosomal protein S5 family protein)

HSP 1 Score: 330.9 bits (847), Expect = 5.2e-91
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. TAIR10
Match: AT1G58684.1 (AT1G58684.1 Ribosomal protein S5 family protein)

HSP 1 Score: 330.9 bits (847), Expect = 5.2e-91
Identity = 159/174 (91.38%), Postives = 166/174 (95.40%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 100 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 159

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 160 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 219

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKA 175
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD L+   V A
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of MELO3C023117 vs. TAIR10
Match: AT2G41840.1 (AT2G41840.1 Ribosomal protein S5 family protein)

HSP 1 Score: 329.7 bits (844), Expect = 1.1e-90
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG+IILAKLSV+PVR
Sbjct: 101 MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 160

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+DVFTSS
Sbjct: 161 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSS 220

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLA 169
           RGSTKTLGNFVKATFDCL KTYGFLTPEFW+ETRF++SP+QEHTD LA
Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268

[Close]

BLAST of MELO3C023117 vs. NCBI nr
Match: gi|659121645|ref|XP_008460763.1| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo])

HSP 1 Score: 372.9 bits (956), Expect = 3.4e-100
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 87  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 146

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 147 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 206

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA
Sbjct: 207 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 266

Query: 181 ERVAA 186
           ERVAA
Sbjct: 267 ERVAA 271

[Close]

BLAST of MELO3C023117 vs. NCBI nr
Match: gi|778692263|ref|XP_004149390.2| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.2e-99
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 87  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 146

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 147 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 206

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA
Sbjct: 207 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 266

Query: 181 ERVAA 186
           ER AA
Sbjct: 267 ERGAA 271

[Close]

BLAST of MELO3C023117 vs. NCBI nr
Match: gi|659085013|ref|XP_008443195.1| (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 8.3e-99
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLED 
Sbjct: 205 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 ERVAA 186
           +RV A
Sbjct: 265 DRVTA 269

[Close]

BLAST of MELO3C023117 vs. NCBI nr
Match: gi|778685074|ref|XP_011652156.1| (PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 181/185 (97.84%), Postives = 183/185 (98.92%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 85  MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 144

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 145 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 204

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLL+TYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLED 
Sbjct: 205 RGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDP 264

Query: 181 ERVAA 186
           +RV A
Sbjct: 265 DRVTA 269

[Close]

BLAST of MELO3C023117 vs. NCBI nr
Match: gi|702247801|ref|XP_010057233.1| (PREDICTED: 40S ribosomal protein S2-4 [Eucalyptus grandis])

HSP 1 Score: 358.2 bits (918), Expect = 8.6e-96
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 60
           MKIMPVQKQTRAGQRTRFKAFVVVGD NGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR
Sbjct: 87  MKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVR 146

Query: 61  RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 120
           RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS
Sbjct: 147 RGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSS 206

Query: 121 RGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEHTDLLAKPTVKALLLEDA 180
           RGSTKTLGNFVKATFDCLLKTYGFLTP+FWRETRFTKSPFQE+TD+LAKPT KAL+L+DA
Sbjct: 207 RGSTKTLGNFVKATFDCLLKTYGFLTPDFWRETRFTKSPFQEYTDMLAKPTGKALILDDA 266

Query: 181 ERV 184
           ER+
Sbjct: 267 ERI 269

The following BLAST results are available for this feature:

BLAST of MELO3C023117 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS21_ARATH	9.2e-90	91.38	40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2	[more]
RS22_ARATH	9.2e-90	91.38	40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1	[more]
RS23_ARATH	2.0e-89	94.05	40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2	[more]
RS24_ARATH	7.8e-89	91.38	40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1	[more]
RS2_ICTPU	9.8e-76	79.29	40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	[more]

BLAST of MELO3C023117 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZQ4_CUCSA	1.5e-99	99.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1	[more]
E5GBY7_CUCME	5.8e-99	98.38	40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LFC7_CUCSA	1.3e-98	97.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1	[more]
A0A059DI03_EUCGR	6.0e-96	95.63	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02370 PE=3 SV=1	[more]
A0A0J8B3V6_BETVU	1.9e-94	92.97	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_004290 PE=3 SV=...	[more]

BLAST of MELO3C023117 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G58983.1	5.2e-91	91.38	Ribosomal protein S5 family protein	[more]
AT1G59359.1	5.2e-91	91.38	Ribosomal protein S5 family protein	[more]
AT1G58380.1	5.2e-91	91.38	Ribosomal protein S5 family protein	[more]
AT1G58684.1	5.2e-91	91.38	Ribosomal protein S5 family protein	[more]
AT2G41840.1	1.1e-90	94.05	Ribosomal protein S5 family protein	[more]

BLAST of MELO3C023117 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121645\|ref\|XP_008460763.1\|	3.4e-100	100.00	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo]	[more]
gi\|778692263\|ref\|XP_004149390.2\|	2.2e-99	99.46	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus]	[more]
gi\|659085013\|ref\|XP_008443195.1\|	8.3e-99	98.38	PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo]	[more]
gi\|778685074\|ref\|XP_011652156.1\|	1.8e-98	97.84	PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus]	[more]
gi\|702247801\|ref\|XP_010057233.1\|	8.6e-96	95.63	PREDICTED: 40S ribosomal protein S2-4 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000851	Ribosomal_S5
IPR005324	Ribosomal_S5_C
IPR005711	Ribosomal_S5_euk/arc
IPR013810	Ribosomal_S5_N
IPR014720	dsRBD_dom
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR018192	Ribosomal_S5_N_CS
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0015935	small ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU43899	melon EST collection version 4.0	transcribed_cluster
MU57930	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023117T1	MELO3C023117T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU43899	MU43899	transcribed_cluster
MU57930	MU57930	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 1..178 score: 8.2E
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 79..146 score: 8.9
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAMs	TIGR01020	TIGR01020	coord: 1..156 score: 9.7
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 1..60 score: 6.0
IPR013810	Ribosomal protein S5, N-terminal	PROFILE	PS50881	S5_DSRBD	coord: 1..59 score: 21
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 1..58 score: 3.8
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 67..142 score: 1.8
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 13..45 scor
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 72..152 score: 6.83
None	No IPR available	PANTHER	PTHR13718:SF69	SUBFAMILY NOT NAMED	coord: 1..178 score: 8.2E
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 2..61 score: 2.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023117	Csa4G166960	Cucumber (Chinese Long) v2	cumeB331
MELO3C023117	ClCG04G003240	Watermelon (Charleston Gray)	mewcgB534
MELO3C023117	Cla97C04G070410	Watermelon (97103) v2	mewmbB544
MELO3C023117	Bhi03G001932	Wax gourd	mewgoB646
MELO3C023117	CSPI04G10680	Wild cucumber (PI 183967)	cpimeB332
MELO3C023117	Cucsa.164220	Cucumber (Gy14) v1	cgymeB287
MELO3C023117	CmaCh03G000710	Cucurbita maxima (Rimu)	cmameB621
MELO3C023117	CmaCh07G013200	Cucurbita maxima (Rimu)	cmameB805
MELO3C023117	CmoCh07G013650	Cucurbita moschata (Rifu)	cmomeB789
MELO3C023117	CmoCh03G000690	Cucurbita moschata (Rifu)	cmomeB609
MELO3C023117	Lsi01G018530	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023117	Cp4.1LG10g11600	Cucurbita pepo (Zucchini)	cpemeB064
MELO3C023117	Cp4.1LG19g00570	Cucurbita pepo (Zucchini)	cpemeB465
MELO3C023117	CsGy4G010310	Cucumber (Gy14) v2	cgybmeB287
MELO3C023117	Carg12743	Silver-seed gourd	carmeB0285
MELO3C023117	Carg22458	Silver-seed gourd	carmeB0196
MELO3C023117	CsaV3_4G011790	Cucumber (Chinese Long) v3	cucmeB338

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023117	Cucurbita maxima (Rimu)	cmameB613
MELO3C023117	Cucurbita maxima (Rimu)	cmameB810
MELO3C023117	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023117	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023117	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023117	Silver-seed gourd	carmeB0288