Cp4.1LG10g11600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g11600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosomal protein S2
Location	Cp4.1LG10 : 8784908 .. 8786825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACCCATCAAATCTTAAACTCGCAGTAGCCCCGTATATAAATTTCTTCATTAGGGTTTTCATCCTCTTCATACACTCTCCAAGTTCCAATCTCTCCCCCCATTTTCTCTTGCAGCTGCGCGAACCCTAATCATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTCGGCGGTAGAGGCCGGGGTGGGGACCGTGGCCGTGGACGACGTCGCGCAGGTCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATTATGCCTGTGCAGAAACAGACCCGGGCTGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGAAATGGCCATGTCGGATTGGGAGTTAAGTGCAGTAAGGAGGTGGCGACTGCTATTCGTGGATCGATTATATTGGCTAAGTTGTCAGTGATCCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCACATACCGTTCCTTGCAAGGTTACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACATCTTCCCGGGGATCGACCAAGACACTTGGAAACTTCGTGAAGGTATATCATAATATGATGCAAGATCCATCTCATCTGTTATGCTAAATATATGATTGACATTTAAGGTGTCCATTATTACAATTTAGATTCGTAATTAGTCGAACCTTATGAGATTTTGAGTAGTAGTCTACCCATGGTTTGTTGTTGATATTTTACTGATCTGGGTTGTTCTTTCTTTGGATTCTTCTCTTTGTTTGTTCATCCGTTTTATTTAAATAATGTGGAATTCACTTGAATGTTGTGGTTTAAATCAGAGTACAGGATATGCCTTGTGTATGATTTTAGATACGTGTGTGATTTGTAAATGCTTAACAGCTTAACAGTTTAGATGTAACTTTTGATGTGTTTAGATTAGAGAACTTCAAATTTTTCTTATGATTAAATGGCATGGAATTGGTTGATCGTGCCTTTGTATGCAAATATGTGTGAAAAGGCATCGATAAAGATTGTTCTTTTCTTAAATGGGTTGATGTGGTTTGCTATTTAATGTTGAACATGAACTATGTAACGTTCAATCTGTTCGTATGAAATCTGGATTTGATTTATTCTGTCGTTCTAATTTGTTTCCATTTTGGCAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCCGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACGGATCTGTTGGCGAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGGTCAATGCTTAAGTCGCTTGGGTATGTTTTCACAAAAAGAGAAGAATGTTTTTGTTAGGAACTTCATAGTTTATGCTTTCTGTTGAGTTGTTTTACATTCATGGATAGTGTTCTATCTGATTCTTATTGGTACTTTGAACTGTGTTTTTTTTTTTTTGTGTTTCTGAATCCAATTAACGCTTGATTTTGAATGCATCAATCGCTTACATTAGAATCAAAGCTAAGAAGAATGTTACAATGGAAATTAAGAACTTTGAAACGATGTATTATTTATATGATGTTTATTTACTATTTCAAGTATAATGATGAATTTAATTAAACTCAAGAAGAATATATAGTTTAATGATTATTATGGCCAAATTAATTTTGTAATGTAATTTAACCTATTCTATTTTCGAAGAGG

mRNA sequence

TGAACCCATCAAATCTTAAACTCGCAGTAGCCCCGTATATAAATTTCTTCATTAGGGTTTTCATCCTCTTCATACACTCTCCAAGTTCCAATCTCTCCCCCCATTTTCTCTTGCAGCTGCGCGAACCCTAATCATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTCGGCGGTAGAGGCCGGGGTGGGGACCGTGGCCGTGGACGACGTCGCGCAGGTCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATTATGCCTGTGCAGAAACAGACCCGGGCTGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGAAATGGCCATGTCGGATTGGGAGTTAAGTGCAGTAAGGAGGTGGCGACTGCTATTCGTGGATCGATTATATTGGCTAAGTTGTCAGTGATCCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCACATACCGTTCCTTGCAAGGTTACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACATCTTCCCGGGGATCGACCAAGACACTTGGAAACTTCGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCCGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACGGATCTGTTGGCGAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGGTCAATGCTTAAGTCGCTTGGGTATGTTTTCACAAAAAGAGAAGAATGTTTTTGTTAGGAACTTCATAGTTTATGCTTTCTGTTGAGTTGTTTTACATTCATGGATAGTGTTCTATCTGATTCTTATTGGTACTTTGAACTGTGTTTTTTTTTTTTTGTGTTTCTGAATCCAATTAACGCTTGATTTTGAATGCATCAATCGCTTACATTAGAATCAAAGCTAAGAAGAATGTTACAATGGAAATTAAGAACTTTGAAACGATGTATTATTTATATGATGTTTATTTACTATTTCAAGTATAATGATGAATTTAATTAAACTCAAGAAGAATATATAGTTTAATGATTATTATGGCCAAATTAATTTTGTAATGTAATTTAACCTATTCTATTTTCGAAGAGG

Coding sequence (CDS)

ATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTCGGCGGTAGAGGCCGGGGTGGGGACCGTGGCCGTGGACGACGTCGCGCAGGTCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATTATGCCTGTGCAGAAACAGACCCGGGCTGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGAAATGGCCATGTCGGATTGGGAGTTAAGTGCAGTAAGGAGGTGGCGACTGCTATTCGTGGATCGATTATATTGGCTAAGTTGTCAGTGATCCCTGTTAGGAGGGGTTATTGGGGTAACAAGATTGGAAAGCCACATACCGTTCCTTGCAAGGTTACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACATCTTCCCGGGGATCGACCAAGACACTTGGAAACTTCGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCCGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACGGATCTGTTGGCGAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGGTCAATGCTTAA

Protein sequence

MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERVNA

Homology

[Close]

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 8.8e-126
Identity = 232/260 (89.23%), Postives = 244/260 (93.85%), Query Frame = 1


Query: 3   ERGGDRGGFGRGFGGRG--RGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           ERGGDRG FGRGFGGRG  RGG RGRGRR AGR  EEEKWVPVTKLGRLVKEGKI  +EQ
Sbjct: 7   ERGGDRGDFGRGFGGRGGGRGGPRGRGRR-AGRAPEEEKWVPVTKLGRLVKEGKITKIEQ 66

Query: 63  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QI+D L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLG
Sbjct: 67  IYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLG 126

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 127 VKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 186

Query: 183 GAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETR 242
           G+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEFWKETR
Sbjct: 187 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 246

Query: 243 FTKSPFQEHTD-LLAKPTVK 260
           F+KSP+QEHTD LL  P VK
Sbjct: 247 FSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 442.2 bits (1136), Expect = 4.1e-123
Identity = 225/258 (87.21%), Postives = 238/258 (92.25%), Query Frame = 1


Query: 3   ERGGDRGGFGRGFGGRGRGGDRG------RGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQ 62
           ERGG+RG FGRGFGGRG  GDRG      RG RR GR  EEEKWVPVTKLGRLV  G I+
Sbjct: 11  ERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIK 70

Query: 63  SLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH 122
            +EQIYLHSLP+KE+QI+D LIGP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH
Sbjct: 71  QIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH 130

Query: 123 VGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV 182
           VGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV
Sbjct: 131 VGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV 190

Query: 183 PAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW 242
           PAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEFW
Sbjct: 191 PAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFW 250

Query: 243 KETRFTKSPFQEHTDLLA 255
           KETRF++SP+QEHTD LA
Sbjct: 251 KETRFSRSPYQEHTDFLA 268

[Close]

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 441.4 bits (1134), Expect = 7.0e-123
Identity = 227/265 (85.66%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 2   AERGGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKLGRLVKEGKI 61
           AERGGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKLGRLV + KI
Sbjct: 10  AERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKI 69

Query: 62  QSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 121
             LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG
Sbjct: 70  TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129

Query: 122 HVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 181
           HVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189

Query: 182 VPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEF 241
           VPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEF
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249

Query: 242 WKETRFTKSPFQEHTDLLAKPTVKA 261
           WKETRF++SP+QEHTD L+   V A
Sbjct: 250 WKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 7.0e-123
Identity = 227/265 (85.66%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 2   AERGGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKLGRLVKEGKI 61
           AERGGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKLGRLV + KI
Sbjct: 10  AERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKI 69

Query: 62  QSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 121
             LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG
Sbjct: 70  TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129

Query: 122 HVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 181
           HVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189

Query: 182 VPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEF 241
           VPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEF
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249

Query: 242 WKETRFTKSPFQEHTDLLAKPTVKA 261
           WKETRF++SP+QEHTD L+   V A
Sbjct: 250 WKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 375.9 bits (964), Expect = 3.6e-103
Identity = 191/257 (74.32%), Postives = 218/257 (84.82%), Query Frame = 1


Query: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGR--RDEEEKWVPVTKLGRLVKEGKIQSL 60
           M  RGG RGGFG G  GRGRG  RGRGR R  R  + E+++W+PVTKLGRLVK+ KI+SL
Sbjct: 19  MGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSL 78

Query: 61  EQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVG 120
           E+IYL SLPIKE +I+D  +G SLKDEV+KIMPVQKQTRAGQRTRFKAFV +GD NGHVG
Sbjct: 79  EEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVG 138

Query: 121 LGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180
           LGVKCSKEVATAIRG+IILAKLS++PVRRGYWGNKIGKPHTVPCKVTG+CGSV VR++PA
Sbjct: 139 LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPA 198

Query: 181 PRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240
           PRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATFD + KTY +LTP+ WKE
Sbjct: 199 PRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKE 258

Query: 241 TRFTKSPFQEHTDLLAK 256
           T FTKSP+QE TD L K
Sbjct: 259 TVFTKSPYQEFTDHLVK 275

[Close]

BLAST of Cp4.1LG10g11600 vs. TrEMBL
Match: A0A0A0KZQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 2.3e-144
Identity = 264/268 (98.51%), Postives = 268/268 (100.00%), Query Frame = 1


Query: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 60
           MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRR+EEEKWVPVTKLGRLVKEGKIQSLEQ
Sbjct: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIQSLEQ 60

Query: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120
           IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120

Query: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180
           VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180

Query: 181 GAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETR 240
           GAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ETR
Sbjct: 181 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETR 240

Query: 241 FTKSPFQEHTDLLAKPTVKALLLDDAER 269
           FTKSPFQEHTDLLAKPTVKALLL+DAER
Sbjct: 241 FTKSPFQEHTDLLAKPTVKALLLEDAER 268

[Close]

BLAST of Cp4.1LG10g11600 vs. TrEMBL
Match: A0A0A0LFC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 3.2e-138
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 1


Query: 7   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 66
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 62

Query: 67  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 126
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 127 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 186
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 187 VAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKS 246
           VAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLL+TYGFLTPEFW+ETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKS 242

Query: 247 PFQEHTDLLAKPTVKALLLDDAERVNA 272
           PFQEHTDLLAKPTVKALLL+D +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG10g11600 vs. TrEMBL
Match: E5GBY7_CUCME (40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 3.2e-138
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 1


Query: 7   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 66
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIYLH 62

Query: 67  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 126
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 127 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 186
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 187 VAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKS 246
           VAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 242

Query: 247 PFQEHTDLLAKPTVKALLLDDAERVNA 272
           PFQEHTDLLAKPTVKALLL+D +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG10g11600 vs. TrEMBL
Match: I1K5K3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G239000 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 3.9e-136
Identity = 255/273 (93.41%), Postives = 266/273 (97.44%), Query Frame = 1


Query: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAG-RRDEEEKWVPVTKLGRLVKEGKIQSL 60
           MAERGG DR GFGRGFGGRGRGGDRGRGRRRAG RRDEEEKWVPVTKLGRLVKEGKI+SL
Sbjct: 1   MAERGGGDRAGFGRGFGGRGRGGDRGRGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSL 60

Query: 61  EQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVG 120
           EQIYLHSLPIKEHQI+DTL+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVG
Sbjct: 61  EQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVG 120

Query: 121 LGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180
           LGVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA
Sbjct: 121 LGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180

Query: 181 PRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240
           PRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE
Sbjct: 181 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240

Query: 241 TRFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272
           TRF+KSPFQE+TDLLAKPT KAL+L++ ERV A
Sbjct: 241 TRFSKSPFQEYTDLLAKPTGKALILEE-ERVEA 272

[Close]

BLAST of Cp4.1LG10g11600 vs. TrEMBL
Match: A0A0B2QJI4_GLYSO (40S ribosomal protein S2-4 OS=Glycine soja GN=glysoja_023463 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 3.9e-136
Identity = 255/273 (93.41%), Postives = 266/273 (97.44%), Query Frame = 1


Query: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAG-RRDEEEKWVPVTKLGRLVKEGKIQSL 60
           MAERGG DR GFGRGFGGRGRGGDRGRGRRRAG RRDEEEKWVPVTKLGRLVKEGKI+SL
Sbjct: 1   MAERGGGDRAGFGRGFGGRGRGGDRGRGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSL 60

Query: 61  EQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVG 120
           EQIYLHSLPIKEHQI+DTL+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVG
Sbjct: 61  EQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVG 120

Query: 121 LGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180
           LGVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA
Sbjct: 121 LGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180

Query: 181 PRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240
           PRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE
Sbjct: 181 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240

Query: 241 TRFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272
           TRF+KSPFQE+TDLLAKPT KAL+L++ ERV A
Sbjct: 241 TRFSKSPFQEYTDLLAKPTGKALILEE-ERVEA 272

[Close]

BLAST of Cp4.1LG10g11600 vs. TAIR10
Match: AT3G57490.1 (AT3G57490.1 Ribosomal protein S5 family protein)

HSP 1 Score: 451.1 bits (1159), Expect = 5.0e-127
Identity = 232/260 (89.23%), Postives = 244/260 (93.85%), Query Frame = 1


Query: 3   ERGGDRGGFGRGFGGRG--RGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 62
           ERGGDRG FGRGFGGRG  RGG RGRGRR AGR  EEEKWVPVTKLGRLVKEGKI  +EQ
Sbjct: 7   ERGGDRGDFGRGFGGRGGGRGGPRGRGRR-AGRAPEEEKWVPVTKLGRLVKEGKITKIEQ 66

Query: 63  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 122
           IYLHSLP+KE+QI+D L+GPSLKDEVMKIMPVQKQTRAGQRTRFKAF+VVGD NGHVGLG
Sbjct: 67  IYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLG 126

Query: 123 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 182
           VKCSKEVATAIRG+IILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 127 VKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 186

Query: 183 GAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETR 242
           G+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEFWKETR
Sbjct: 187 GSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 246

Query: 243 FTKSPFQEHTD-LLAKPTVK 260
           F+KSP+QEHTD LL  P VK
Sbjct: 247 FSKSPYQEHTDFLLIPPGVK 265

[Close]

BLAST of Cp4.1LG10g11600 vs. TAIR10
Match: AT2G41840.1 (AT2G41840.1 Ribosomal protein S5 family protein)

HSP 1 Score: 442.2 bits (1136), Expect = 2.3e-124
Identity = 225/258 (87.21%), Postives = 238/258 (92.25%), Query Frame = 1


Query: 3   ERGGDRGGFGRGFGGRGRGGDRG------RGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQ 62
           ERGG+RG FGRGFGGRG  GDRG      RG RR GR  EEEKWVPVTKLGRLV  G I+
Sbjct: 11  ERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIK 70

Query: 63  SLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH 122
            +EQIYLHSLP+KE+QI+D LIGP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH
Sbjct: 71  QIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGH 130

Query: 123 VGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV 182
           VGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV
Sbjct: 131 VGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMV 190

Query: 183 PAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW 242
           PAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEFW
Sbjct: 191 PAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFW 250

Query: 243 KETRFTKSPFQEHTDLLA 255
           KETRF++SP+QEHTD LA
Sbjct: 251 KETRFSRSPYQEHTDFLA 268

[Close]

BLAST of Cp4.1LG10g11600 vs. TAIR10
Match: AT1G58983.1 (AT1G58983.1 Ribosomal protein S5 family protein)

HSP 1 Score: 441.4 bits (1134), Expect = 3.9e-124
Identity = 227/265 (85.66%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 2   AERGGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKLGRLVKEGKI 61
           AERGGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKLGRLV + KI
Sbjct: 10  AERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKI 69

Query: 62  QSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 121
             LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG
Sbjct: 70  TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129

Query: 122 HVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 181
           HVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189

Query: 182 VPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEF 241
           VPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEF
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249

Query: 242 WKETRFTKSPFQEHTDLLAKPTVKA 261
           WKETRF++SP+QEHTD L+   V A
Sbjct: 250 WKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG10g11600 vs. TAIR10
Match: AT1G59359.1 (AT1G59359.1 Ribosomal protein S5 family protein)

HSP 1 Score: 441.4 bits (1134), Expect = 3.9e-124
Identity = 227/265 (85.66%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 2   AERGGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKLGRLVKEGKI 61
           AERGGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKLGRLV + KI
Sbjct: 10  AERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKI 69

Query: 62  QSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 121
             LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG
Sbjct: 70  TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129

Query: 122 HVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 181
           HVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189

Query: 182 VPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEF 241
           VPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEF
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249

Query: 242 WKETRFTKSPFQEHTDLLAKPTVKA 261
           WKETRF++SP+QEHTD L+   V A
Sbjct: 250 WKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG10g11600 vs. TAIR10
Match: AT1G58380.1 (AT1G58380.1 Ribosomal protein S5 family protein)

HSP 1 Score: 441.4 bits (1134), Expect = 3.9e-124
Identity = 227/265 (85.66%), Postives = 240/265 (90.57%), Query Frame = 1


Query: 2   AERGGDRGGFGRGFGGRGRGGDRGRGR------RRAGRRDEEEKWVPVTKLGRLVKEGKI 61
           AERGGDRG FGRGFGG GRGG RGR R      RR GR  EE KWVPVTKLGRLV + KI
Sbjct: 10  AERGGDRGDFGRGFGG-GRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLGRLVADNKI 69

Query: 62  QSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 121
             LEQIYLHSLP+KE+QI+D L+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG
Sbjct: 70  TKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129

Query: 122 HVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 181
           HVGLGVKCSKEVATAIRG+IILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRM 189

Query: 182 VPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEF 241
           VPAPRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCL KTYGFLTPEF
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249

Query: 242 WKETRFTKSPFQEHTDLLAKPTVKA 261
           WKETRF++SP+QEHTD L+   V A
Sbjct: 250 WKETRFSRSPYQEHTDFLSTKAVSA 273

[Close]

BLAST of Cp4.1LG10g11600 vs. NCBI nr
Match: gi|659121645|ref|XP_008460763.1| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo])

HSP 1 Score: 523.5 bits (1347), Expect = 2.2e-145
Identity = 267/271 (98.52%), Postives = 270/271 (99.63%), Query Frame = 1


Query: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 60
           MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ
Sbjct: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 60

Query: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120
           IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120

Query: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180
           VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180

Query: 181 GAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETR 240
           GAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ETR
Sbjct: 181 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETR 240

Query: 241 FTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272
           FTKSPFQEHTDLLAKPTVKALLL+DAERV A
Sbjct: 241 FTKSPFQEHTDLLAKPTVKALLLEDAERVAA 271

[Close]

BLAST of Cp4.1LG10g11600 vs. NCBI nr
Match: gi|778692263|ref|XP_004149390.2| (PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus])

HSP 1 Score: 519.6 bits (1337), Expect = 3.2e-144
Identity = 264/268 (98.51%), Postives = 268/268 (100.00%), Query Frame = 1


Query: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQ 60
           MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRR+EEEKWVPVTKLGRLVKEGKIQSLEQ
Sbjct: 1   MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRREEEEKWVPVTKLGRLVKEGKIQSLEQ 60

Query: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120
           IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG
Sbjct: 61  IYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 120

Query: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180
           VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 121 VKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 180

Query: 181 GAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETR 240
           GAGIVAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ETR
Sbjct: 181 GAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETR 240

Query: 241 FTKSPFQEHTDLLAKPTVKALLLDDAER 269
           FTKSPFQEHTDLLAKPTVKALLL+DAER
Sbjct: 241 FTKSPFQEHTDLLAKPTVKALLLEDAER 268

[Close]

BLAST of Cp4.1LG10g11600 vs. NCBI nr
Match: gi|659085013|ref|XP_008443195.1| (PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 4.5e-138
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 1


Query: 7   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 66
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEG+IQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIYLH 62

Query: 67  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 126
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 127 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 186
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 187 VAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKS 246
           VAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFW+ETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKS 242

Query: 247 PFQEHTDLLAKPTVKALLLDDAERVNA 272
           PFQEHTDLLAKPTVKALLL+D +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG10g11600 vs. NCBI nr
Match: gi|778685074|ref|XP_011652156.1| (PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 4.5e-138
Identity = 257/267 (96.25%), Postives = 263/267 (98.50%), Query Frame = 1


Query: 7   DRGGFGRGFGGRGRGG-DRGRG-RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 66
           +RGGFGRGFGGRGRGG DRGRG RRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH
Sbjct: 3   ERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLH 62

Query: 67  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 126
           SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS
Sbjct: 63  SLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCS 122

Query: 127 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 186
           KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI
Sbjct: 123 KEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGI 182

Query: 187 VAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKS 246
           VAARVPKKVLQFAGI+DVFTSSRGSTKTLGNFVKATFDCLL+TYGFLTPEFW+ETRFTKS
Sbjct: 183 VAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLRTYGFLTPEFWRETRFTKS 242

Query: 247 PFQEHTDLLAKPTVKALLLDDAERVNA 272
           PFQEHTDLLAKPTVKALLL+D +RV A
Sbjct: 243 PFQEHTDLLAKPTVKALLLEDPDRVTA 269

[Close]

BLAST of Cp4.1LG10g11600 vs. NCBI nr
Match: gi|356513050|ref|XP_003525227.1| (PREDICTED: 40S ribosomal protein S2-4-like [Glycine max])

HSP 1 Score: 492.3 bits (1266), Expect = 5.5e-136
Identity = 255/273 (93.41%), Postives = 266/273 (97.44%), Query Frame = 1


Query: 1   MAERGG-DRGGFGRGFGGRGRGGDRGRGRRRAG-RRDEEEKWVPVTKLGRLVKEGKIQSL 60
           MAERGG DR GFGRGFGGRGRGGDRGRGRRRAG RRDEEEKWVPVTKLGRLVKEGKI+SL
Sbjct: 1   MAERGGGDRAGFGRGFGGRGRGGDRGRGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSL 60

Query: 61  EQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVG 120
           EQIYLHSLPIKEHQI+DTL+GP+LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD NGHVG
Sbjct: 61  EQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVG 120

Query: 121 LGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180
           LGVKCSKEVATAIRG+IILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA
Sbjct: 121 LGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPA 180

Query: 181 PRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240
           PRG+GIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE
Sbjct: 181 PRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKE 240

Query: 241 TRFTKSPFQEHTDLLAKPTVKALLLDDAERVNA 272
           TRF+KSPFQE+TDLLAKPT KAL+L++ ERV A
Sbjct: 241 TRFSKSPFQEYTDLLAKPTGKALILEE-ERVEA 272

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g11600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS24_ARATH	8.8e-126	89.23	40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1	[more]
RS23_ARATH	4.1e-123	87.21	40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2	[more]
RS21_ARATH	7.0e-123	85.66	40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2	[more]
RS22_ARATH	7.0e-123	85.66	40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1	[more]
RS2_HUMAN	3.6e-103	74.32	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	[more]

BLAST of Cp4.1LG10g11600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZQ4_CUCSA	2.3e-144	98.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166960 PE=3 SV=1	[more]
A0A0A0LFC7_CUCSA	3.2e-138	96.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G816100 PE=3 SV=1	[more]
E5GBY7_CUCME	3.2e-138	96.25	40S ribosomal protein s2 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
I1K5K3_SOYBN	3.9e-136	93.41	Uncharacterized protein OS=Glycine max GN=GLYMA_05G239000 PE=3 SV=1	[more]
A0A0B2QJI4_GLYSO	3.9e-136	93.41	40S ribosomal protein S2-4 OS=Glycine soja GN=glysoja_023463 PE=3 SV=1	[more]

BLAST of Cp4.1LG10g11600 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57490.1	5.0e-127	89.23	Ribosomal protein S5 family protein	[more]
AT2G41840.1	2.3e-124	87.21	Ribosomal protein S5 family protein	[more]
AT1G58983.1	3.9e-124	85.66	Ribosomal protein S5 family protein	[more]
AT1G59359.1	3.9e-124	85.66	Ribosomal protein S5 family protein	[more]
AT1G58380.1	3.9e-124	85.66	Ribosomal protein S5 family protein	[more]

BLAST of Cp4.1LG10g11600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121645\|ref\|XP_008460763.1\|	2.2e-145	98.52	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo]	[more]
gi\|778692263\|ref\|XP_004149390.2\|	3.2e-144	98.51	PREDICTED: 40S ribosomal protein S2-4-like [Cucumis sativus]	[more]
gi\|659085013\|ref\|XP_008443195.1\|	4.5e-138	96.25	PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo]	[more]
gi\|778685074\|ref\|XP_011652156.1\|	4.5e-138	96.25	PREDICTED: 40S ribosomal protein S2-4 [Cucumis sativus]	[more]
gi\|356513050\|ref\|XP_003525227.1\|	5.5e-136	93.41	PREDICTED: 40S ribosomal protein S2-4-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR018192	Ribosomal_S5_N_CS
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR014720	dsRBD_dom
IPR013810	Ribosomal_S5_N
IPR005711	Ribosomal_S5_euk/arc
IPR005324	Ribosomal_S5_C
IPR000851	Ribosomal_S5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g11600.1	Cp4.1LG10g11600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 3..257 score: 4.7E
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 165..232 score: 1.4
IPR005711	Ribosomal protein S5, eukaryotic/archaeal	TIGRFAMs	TIGR01020	TIGR01020	coord: 35..242 score: 3.6
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 82..146 score: 1.9
IPR013810	Ribosomal protein S5, N-terminal	PROFILE	PS50881	S5_DSRBD	coord: 82..145 score: 22
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 79..144 score: 3.9
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 153..228 score: 4.3
IPR018192	Ribosomal protein S5, N-terminal, conserved site	PROSITE	PS00585	RIBOSOMAL_S5	coord: 99..131 scor
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 158..238 score: 2.07
None	No IPR available	PANTHER	PTHR13718:SF69	SUBFAMILY NOT NAMED	coord: 3..257 score: 4.7E
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 78..147 score: 7.85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g11600	Cucsa.164220	Cucumber (Gy14) v1	cgycpeB0451
Cp4.1LG10g11600	CmaCh03G000710	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g11600	CmaCh07G013200	Cucurbita maxima (Rimu)	cmacpeB863
Cp4.1LG10g11600	CmoCh03G000690	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g11600	CmoCh07G013650	Cucurbita moschata (Rifu)	cmocpeB803
Cp4.1LG10g11600	Csa4G166960	Cucumber (Chinese Long) v2	cpecuB080
Cp4.1LG10g11600	MELO3C023117	Melon (DHL92) v3.5.1	cpemeB064
Cp4.1LG10g11600	CSPI04G10680	Wild cucumber (PI 183967)	cpecpiB077
Cp4.1LG10g11600	Lsi01G018530	Bottle gourd (USVL1VR-Ls)	cpelsiB051
Cp4.1LG10g11600	MELO3C023117.2	Melon (DHL92) v3.6.1	cpemedB094
Cp4.1LG10g11600	CsaV3_4G011790	Cucumber (Chinese Long) v3	cpecucB0086
Cp4.1LG10g11600	Bhi03G001932	Wax gourd	cpewgoB0088
Cp4.1LG10g11600	CsGy4G010310	Cucumber (Gy14) v2	cgybcpeB475
Cp4.1LG10g11600	Carg12743	Silver-seed gourd	carcpeB0398
Cp4.1LG10g11600	Carg22458	Silver-seed gourd	carcpeB0276

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g11600	Cp4.1LG19g00570	Cucurbita pepo (Zucchini)	cpecpeB085

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g11600	Wax gourd	cpewgoB0093
Cp4.1LG10g11600	Wild cucumber (PI 183967)	cpecpiB069
Cp4.1LG10g11600	Cucumber (Chinese Long) v2	cpecuB074
Cp4.1LG10g11600	Bottle gourd (USVL1VR-Ls)	cpelsiB055
Cp4.1LG10g11600	Watermelon (97103) v1	cpewmB085
Cp4.1LG10g11600	Watermelon (97103) v1	cpewmB087
Cp4.1LG10g11600	Watermelon (97103) v1	cpewmB090
Cp4.1LG10g11600	Melon (DHL92) v3.5.1	cpemeB072
Cp4.1LG10g11600	Cucumber (Gy14) v2	cgybcpeB467
Cp4.1LG10g11600	Melon (DHL92) v3.6.1	cpemedB085
Cp4.1LG10g11600	Cucumber (Chinese Long) v3	cpecucB0079