MELO3C022716.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022716.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Seed nucellus-specific protein
Location	chr04 : 20481785 .. 20482358 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAAAGAGAAACCAAAGTTAGAAAAATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGAAAAGCAGTGCTAAAGAAACCTCTACAAGCATAGAATTGCTTATGGGCTCTATGAATAAAATGTATGAAATATAATTAAGTCTTGCTTAATGGGATTGGTGCTTTAATAGATATGTAAGCATGGCCAAGGTAATGAATCAAAAATCTTTCTTAAAGGTCTACTATTTGGCCTCTCT

mRNA sequence

ACAAAAAGAGAAACCAAAGTTAGAAAAATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGAAAAGCAGTGCTAAAGAAACCTCTACAAGCATAGAATTGCTTATGGGCTCTATGAATAAAATGTATGAAATATAATTAAGTCTTGCTTAATGGGATTGGTGCTTTAATAGATATGTAAGCATGGCCAAGGTAATGAATCAAAAATCTTTCTTAAAGGTCTACTATTTGGCCTCTCT

Coding sequence (CDS)

ATGACGATCAGTAAGGTTCTCATTGCGATCCTCGTGGTCTCTGCAGTGGCAATGACACTTCTGGAAAATGTTGAAGGAGGAAGAGAAATGGCTCCGAAGAAACCAACTGCAAAAACTTATCCCCAAGAATTAGATGATAATTACGAGGGATATAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAATGTGATGGATACAAATACAAAGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGATGTTGACCATCAATACAACTGGGGTCCGTATAAGAAACCGATAACAAAGCCGAAAGAGATGGGTGAAAAGTATGGAGTTCACCAGAGCTACCCCTGA

Protein sequence

MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKPKEDYECDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGVHQSYP

Homology

[Close]

BLAST of MELO3C022716.2 vs. NCBI nr
Match: KGN58370.1 (Seed nucellus-specific protein [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKP------- 60
           MTISKVL+AIL+VSA+AM  LENVEGGREMA KKPTAKTY QELD+NYEGYKP       
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60

Query: 61  --XXXXXXXXXXXXXXCDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKE 120
             XXXXXXXXXXXXXXCDGYKY DKDCYEYGNCDKSPYNED+DHQYNWGP KKPI KPKE
Sbjct: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

Query: 121 MGEKYGVHQSYP 124
           M +KYG HQSYP
Sbjct: 121 MAKKYGAHQSYP 132

[Close]

BLAST of MELO3C022716.2 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 153.3 bits (386), Expect = 5.4e-34
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPXXXXXXXXX 62
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L++ YEGYKP         
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKP--------- 63

Query: 63  XXXXXCDGYKYKDKDCYEYGNCDKSPYNEDV-DHQYNWGPYKKPITKPKEMGEKYGVHQS 122
                CDGYKYKDK+CYEYGNCDKSPYNE+  D QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 64  KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 116

Query: 123 YP 124
           +P
Sbjct: 124 FP 116

[Close]

BLAST of MELO3C022716.2 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_6G109680 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 44/125 (35.20%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPXXXXXXX 60
           MT  K L+A+L  S +AM  +ENVEG R+M  K+ T     Q L++  E Y P       
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNP------- 61

Query: 61  XXXXXXXCDGYKYK--DKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGV 120
                  CDGYKYK                          W  YK P+ KPKE+ EKY V
Sbjct: 62  -NEDEYDCDGYKYKXXXXXXXXXXXXXXXXXXXXXXXXXXWNSYKNPVPKPKEVDEKYKV 117

Query: 121 HQSYP 124
           H+++P
Sbjct: 122 HKNFP 117

[Close]

BLAST of MELO3C022716.2 vs. TrEMBL
Match: tr|A0A0A0L8T2|A0A0A0L8T2_CUCSA (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKP------- 60
           MTISKVL+AIL+VSA+AM  LENVEGGREMA KKPTAKTY QELD+NYEGYKP       
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60

Query: 61  --XXXXXXXXXXXXXXCDGYKYKDKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKE 120
             XXXXXXXXXXXXXXCDGYKY DKDCYEYGNCDKSPYNED+DHQYNWGP KKPI KPKE
Sbjct: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

Query: 121 MGEKYGVHQSYP 124
           M +KYG HQSYP
Sbjct: 121 MAKKYGAHQSYP 132

[Close]

BLAST of MELO3C022716.2 vs. TrEMBL
Match: tr|O22351|O22351_CITLA (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 3   ISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPXXXXXXXXX 62
           + KVL+A+LV+SA+AM LLENVEGGREM  K+ TA  YP  L++ YEGYKP         
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKP--------- 63

Query: 63  XXXXXCDGYKYKDKDCYEYGNCDKSPYNEDV-DHQYNWGPYKKPITKPKEMGEKYGVHQS 122
                CDGYKYKDK+CYEYGNCDKSPYNE+  D QYN  PYKKPI KPKEM  KYGVH +
Sbjct: 64  KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHN 116

Query: 123 YP 124
           +P
Sbjct: 124 FP 116

[Close]

BLAST of MELO3C022716.2 vs. TrEMBL
Match: tr|A0A0A0KAR7|A0A0A0KAR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 44/125 (35.20%), Postives = 57/125 (45.60%), Query Frame = 0


Query: 1   MTISKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPXXXXXXX 60
           MT  K L+A+L  S +AM  +ENVEG R+M  K+ T     Q L++  E Y P       
Sbjct: 2   MTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNP------- 61

Query: 61  XXXXXXXCDGYKYK--DKDCYEYGNCDKSPYNEDVDHQYNWGPYKKPITKPKEMGEKYGV 120
                  CDGYKYK                          W  YK P+ KPKE+ EKY V
Sbjct: 62  -NEDEYDCDGYKYKXXXXXXXXXXXXXXXXXXXXXXXXXXWNSYKNPVPKPKEVDEKYKV 117

Query: 121 HQSYP 124
           H+++P
Sbjct: 122 HKNFP 117

The following BLAST results are available for this feature:

BLAST of MELO3C022716.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58370.1	2.6e-44	81.82	Seed nucellus-specific protein [Cucumis sativus]	[more]
AAB82329.1	5.4e-34	63.11	seed nucellus-specific protein [Citrullus lanatus]	[more]
KGN46573.1	1.1e-05	35.20	hypothetical protein Csa_6G109680 [Cucumis sativus]	[more]

BLAST of MELO3C022716.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C022716.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C022716.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8T2\|A0A0A0L8T2_CUCSA	1.7e-44	81.82	Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S...	[more]
tr\|O22351\|O22351_CITLA	3.6e-34	63.11	Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1	[more]
tr\|A0A0A0KAR7\|A0A0A0KAR7_CUCSA	7.0e-06	35.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022716.2.1	MELO3C022716.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C022716.2	Csa3G630260	Cucumber (Chinese Long) v2	cumedB194
MELO3C022716.2	Cucsa.150130	Cucumber (Gy14) v1	cgymedB249
MELO3C022716.2	CmaCh02G016730	Cucurbita maxima (Rimu)	cmamedB652
MELO3C022716.2	Lsi05G011270	Bottle gourd (USVL1VR-Ls)	lsimedB367
MELO3C022716.2	Cp4.1LG05g00550	Cucurbita pepo (Zucchini)	cpemedB819
MELO3C022716.2	Cla002706	Watermelon (97103) v1	medwmB362
MELO3C022716.2	ClCG07G002060	Watermelon (Charleston Gray)	medwcgB339
MELO3C022716.2	Cla97C07G130340	Watermelon (97103) v2	medwmbB334
MELO3C022716.2	Bhi05G000045	Wax gourd	medwgoB408
MELO3C022716.2	CsaV3_3G030020	Cucumber (Chinese Long) v3	cucmedB199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C022716.2	Cucumber (Gy14) v2	cgybmedB174
MELO3C022716.2	Cucurbita maxima (Rimu)	cmamedB542
MELO3C022716.2	Cucurbita moschata (Rifu)	cmomedB528
MELO3C022716.2	Cucurbita moschata (Rifu)	cmomedB640
MELO3C022716.2	Cucurbita pepo (Zucchini)	cpemedB268
MELO3C022716.2	Wild cucumber (PI 183967)	cpimedB194
MELO3C022716.2	Silver-seed gourd	carmedB0305
MELO3C022716.2	Silver-seed gourd	carmedB0787