CsaV3_3G030020 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G030020
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Seed nucellus-specific protein
Location	chr3 : 25786950 .. 25787320 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATCAGTAAGGTTCTCGTTGCAATCCTCATGGTCTCTGCAATGGCAATGGCATTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCTCTGAAGAAACCAACTGCAAAAACTTATTCCCAAGAATTAGATGAAAATTATGAAGGATACAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAGGGATACAAACCCAAGGAGGATTACGAATGTGATGGATACAAATACAGCGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGACATCGACCATCAATACAACTGGGGTCCGAATAAGAAACCGATAGCAAAGCCGAAAGAGATGGCCAAAAA

mRNA sequence

ATGACTATCAGTAAGGTTCTCGTTGCAATCCTCATGGTCTCTGCAATGGCAATGGCATTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCTCTGAAGAAACCAACTGCAAAAACTTATTCCCAAGAATTAGATGAAAATTATGAAGGATACAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAGGGATACAAACCCAAGGAGGATTACGAATGTGATGGATACAAATACAGCGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGACATCGACCATCAATACAACTGGGGTCCGAATAAGAAACCGATAGCAAAGCCGAAAGAGATGGCCAAAAA

Coding sequence (CDS)

ATGACTATCAGTAAGGTTCTCGTTGCAATCCTCATGGTCTCTGCAATGGCAATGGCATTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGCTCTGAAGAAACCAACTGCAAAAACTTATTCCCAAGAATTAGATGAAAATTATGAAGGATACAAACCCAAGGAGGATTACGAGGGATACAAACCCAAGGAGGATTATGAGGGATACAAACCCAAGGAGGATTACGAATGTGATGGATACAAATACAGCGACAAAGATTGCTATGAATATGGCAACTGTGACAAATCTCCCTACAACGAGGACATCGACCATCAATACAACTGGGGTCCGAATAAGAAACCGATAGCAAAGCCGAAAGAGATGGCCAAAAA

Protein sequence

MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGYKPKEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKEMAKX

Homology

[Close]

BLAST of CsaV3_3G030020 vs. NCBI nr
Match: KGN58370.1 (Seed nucellus-specific protein [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 5.6e-47
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60
           MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120
           XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE
Sbjct: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

Query: 121 MAK 124
           MAK
Sbjct: 121 MAK 123

[Close]

BLAST of CsaV3_3G030020 vs. NCBI nr
Match: AAB82329.1 (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXXXX 62
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E YEGYKP         
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKP--------- 63

Query: 63  XXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122
                         CDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 64  ---------KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 107

Query: 123 AK 124
           A+
Sbjct: 124 AR 107

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BLAST of CsaV3_3G030020 vs. TrEMBL
Match: tr|A0A0A0L8T2|A0A0A0L8T2_CUCSA (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.7e-47
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60
           MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX
Sbjct: 1   MTISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120
           XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE
Sbjct: 61  XXXXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNKKPIAKPKE 120

Query: 121 MAK 124
           MAK
Sbjct: 121 MAK 123

[Close]

BLAST of CsaV3_3G030020 vs. TrEMBL
Match: tr|O22351|O22351_CITLA (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPXXXXXXXXX 62
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E YEGYKP         
Sbjct: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKP--------- 63

Query: 63  XXXXXXXXXXXXXXCDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122
                         CDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 64  ---------KEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 107

Query: 123 AK 124
           A+
Sbjct: 124 AR 107

The following BLAST results are available for this feature:

BLAST of CsaV3_3G030020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58370.1	5.6e-47	100.00	Seed nucellus-specific protein [Cucumis sativus]	[more]
AAB82329.1	3.8e-27	58.20	seed nucellus-specific protein [Citrullus lanatus]	[more]

BLAST of CsaV3_3G030020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8T2\|A0A0A0L8T2_CUCSA	3.7e-47	100.00	Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S...	[more]
tr\|O22351\|O22351_CITLA	2.5e-27	58.20	Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G030020.1	CsaV3_3G030020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..124

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G030020	Cucsa.150130	Cucumber (Gy14) v1	cgycucB227
CsaV3_3G030020	CmaCh02G016730	Cucurbita maxima (Rimu)	cmacucB0716
CsaV3_3G030020	Cp4.1LG05g00550	Cucurbita pepo (Zucchini)	cpecucB0893
CsaV3_3G030020	Cla002706	Watermelon (97103) v1	cucwmB234
CsaV3_3G030020	MELO3C022716	Melon (DHL92) v3.5.1	cucmeB206
CsaV3_3G030020	ClCG07G002060	Watermelon (Charleston Gray)	cucwcgB258
CsaV3_3G030020	Lsi05G011270	Bottle gourd (USVL1VR-Ls)	cuclsiB219
CsaV3_3G030020	MELO3C022716.2	Melon (DHL92) v3.6.1	cucmedB199
CsaV3_3G030020	Cla97C07G130340	Watermelon (97103) v2	cucwmbB238
CsaV3_3G030020	Bhi05G000045	Wax gourd	cucwgoB311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G030020	Cucumber (Chinese Long) v3	cuccucB159
CsaV3_3G030020	Silver-seed gourd	carcucB0325
CsaV3_3G030020	Silver-seed gourd	carcucB0819
CsaV3_3G030020	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G030020	Cucumber (Gy14) v2	cgybcucB125
CsaV3_3G030020	Cucumber (Gy14) v2	cgybcucB331
CsaV3_3G030020	Cucumber (Gy14) v1	cgycucB079
CsaV3_3G030020	Cucurbita maxima (Rimu)	cmacucB0614
CsaV3_3G030020	Cucurbita moschata (Rifu)	cmocucB0598
CsaV3_3G030020	Cucurbita moschata (Rifu)	cmocucB0703
CsaV3_3G030020	Cucurbita moschata (Rifu)	cmocucB0967
CsaV3_3G030020	Cucurbita pepo (Zucchini)	cpecucB0297
CsaV3_3G030020	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G030020	Wild cucumber (PI 183967)	cpicucB156
CsaV3_3G030020	Bottle gourd (USVL1VR-Ls)	cuclsiB196
CsaV3_3G030020	Bottle gourd (USVL1VR-Ls)	cuclsiB220
CsaV3_3G030020	Melon (DHL92) v3.5.1	cucmeB253
CsaV3_3G030020	Melon (DHL92) v3.6.1	cucmedB222
CsaV3_3G030020	Melon (DHL92) v3.6.1	cucmedB249
CsaV3_3G030020	Watermelon (Charleston Gray)	cucwcgB193
CsaV3_3G030020	Watermelon (Charleston Gray)	cucwcgB246
CsaV3_3G030020	Watermelon (97103) v1	cucwmB261
CsaV3_3G030020	Watermelon (97103) v2	cucwmbB224