Cla002706 (gene) Watermelon (97103) v1

Overview
NameCla002706
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSeed nucellus-specific protein (AHRD V1 ***- O22351_CITLA)
LocationChr7 : 244312 .. 244662 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGA

mRNA sequence

ATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGA

Coding sequence (CDS)

ATGAAAATCGTCGGTAAGGTTCTCGTCGCCATGCTCGTAATCTCTGCAATAGCAATGGCGCTTCTGGAAAATGTTGAAGGAGGAAGAGAGATGGGTTTGAAGGAAGCAACTGCAAATGCTTATCCCCATGTTTTAAATGAAAAATATGAGGGATACAAACCCAAGGAAGACTATGAGTGTGATGGATACAAATATAAAGATAAAAATTGCTATGAATATGGCAATTGTGACAAATCTCCCTACAACGAAGAAGAAGACGACCGTCAATACAACGGGAGTCCGTATAAGAAACCGATACCGAAGCCGAAAGAGATGGCCAGAAAGTATGGAGTTCACCACAATTTCCCTTGA

Protein sequence

MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Homology
[Close]
BLAST of Cla002706 vs. TrEMBL
Match: O22351_CITLA (Seed nucellus-specific protein OS=Citrullus lanatus GN=WM403 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Sbjct: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]
BLAST of Cla002706 vs. TrEMBL
Match: A0A0A0L8T2_CUCSA (Seed nucellus-specific protein OS=Cucumis sativus GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-38
Identity = 81/131 (61.83%), Postives = 93/131 (70.99%), Query Frame = 1 

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEK--------------- 63
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E                
Sbjct: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGYKP 62

Query: 64  ---YEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 117
              YEGYKPKEDYECDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 63  KEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122

[Close]
BLAST of Cla002706 vs. TrEMBL
Match: A0A0A0KAR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60
           M   GK LVA+L  S +AM  +ENVEG R+MGLKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNEDEYD 60

Query: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

[Close]
BLAST of Cla002706 vs. NCBI nr
Match: gi|2576407|gb|AAB82329.1| (seed nucellus-specific protein [Citrullus lanatus])

HSP 1 Score: 250.0 bits (637), Expect = 2.0e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60
           MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC
Sbjct: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKEDYEC 60

Query: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP
Sbjct: 61  DGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 116

[Close]
BLAST of Cla002706 vs. NCBI nr
Match: gi|700203237|gb|KGN58370.1| (Seed nucellus-specific protein [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 81/131 (61.83%), Postives = 93/131 (70.99%), Query Frame = 1 

Query: 4   VGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEK--------------- 63
           + KVLVA+L++SA+AMA LENVEGGREM LK+ TA  Y   L+E                
Sbjct: 3   ISKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENYEGYKPKEDYEGYKP 62

Query: 64  ---YEGYKPKEDYECDGYKYKDKNCYEYGNCDKSPYNEEEDDRQYNGSPYKKPIPKPKEM 117
              YEGYKPKEDYECDGYKY DK+CYEYGNCDKSPYN E+ D QYN  P KKPI KPKEM
Sbjct: 63  KEDYEGYKPKEDYECDGYKYSDKDCYEYGNCDKSPYN-EDIDHQYNWGPNKKPIAKPKEM 122

[Close]
BLAST of Cla002706 vs. NCBI nr
Match: gi|700191369|gb|KGN46573.1| (hypothetical protein Csa_6G109680 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-33
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 1   MKIVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKYEGYKPKED-YE 60
           M   GK LVA+L  S +AM  +ENVEG R+MGLKEAT      VLNEK E Y P ED Y+
Sbjct: 1   MMTTGKNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKME-YNPNEDEYD 60

Query: 61  CDGYKYKDKNCYEYGNCDKSPY-NEEEDDRQYNGSPYKKPIPKPKEMARKYGVHHNFP 117
           CDGYKYKDK+CY+YGNCDKSPY + ++DD QYN + YK P+PKPKE+  KY VH NFP
Sbjct: 61  CDGYKYKDKDCYDYGNCDKSPYDHSDDDDGQYNWNSYKNPVPKPKEVDEKYKVHKNFP 117

The following BLAST results are available for this feature:
BLAST of Cla002706 vs. TrEMBL
Match NameE-valueIdentityDescription
O22351_CITLA1.4e-63100.00Seed nucellus-specific protein OS=Citrullus lanatus GN=WM403 PE=4 SV=1[more]
A0A0A0L8T2_CUCSA2.7e-3861.83Seed nucellus-specific protein OS=Cucumis sativus GN=Csa_3G630260 PE=4 SV=1[more]
A0A0A0KAR7_CUCSA1.5e-3362.71Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109680 PE=4 SV=1[more]
BLAST of Cla002706 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|2576407|gb|AAB82329.1|2.0e-63100.00seed nucellus-specific protein [Citrullus lanatus][more]
gi|700203237|gb|KGN58370.1|3.9e-3861.83Seed nucellus-specific protein [Cucumis sativus][more]
gi|700191369|gb|KGN46573.1|2.2e-3362.71hypothetical protein Csa_6G109680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08468watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU30243watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU54067watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002706Cla002706.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU08468WMU08468transcribed_cluster
WMU30243WMU30243transcribed_cluster
WMU54067WMU54067transcribed_cluster