MELO3C022159 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022159
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA binding protein
Locationchr9 : 642497 .. 645579 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGGAAAGTAAAATATTGCACTCTTTTTCATAAAAAAAAAAAATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCACGTAAAAGAACTCCTCCACTTCTCTCGTGAACCTTCCGGCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCAGCATTTCCGCGGACAGCTCACGCGACTCCGCCGAAGAACAACGAAAGGCGGCGGCGTTTTACCTAGCTCCTTCTGATTTTCCCGTTCCTGGCGCACCCTACGAAGTGACTTCCTCTCCTGAAACCCACGCACGAGCAAAACACTCTAAATTCCTTTCGAACTTAGGCTCTGGTGTTCGGTTTTGTGAAATCGAACACAATCAAAGAACTTTTGGGTTCCTTTTTGGTAAGATTTAAGTGAGTAAACCCTCTAAATTTCTTTCGAAGTTCAATAGAGTGCTTTAGAATTATCCCCAACACTTCGAAAAATTTTGTTTGTAGAGACCGCGATATACTAATTCGAAATACTAATGGGGAGTATAGTTGAAATGCAAACCACAATAGGAGAATTGAAATCGAAGCAATACTAAATAAAGGTTTATTGGGTTATTTTTTCTTATCTTTCCTTTTTGCTGTCGGAACTTCGATCTAGGCGTTTGCAGCTGAACTTGTATAGTAATTATGTCAGGAAGGTCAAAGGGATGCACCATTTACGTTGGTAAGTTTGTTATTATTTCTATCTATCTTAATTCATGTTCTTTGTACTCTAATTTGTTTTTCTTTCATGAGGATTCTGTTTGCGGGTTAAGCTTCATGTTTTTTCTTCTGTGAAGCTTCTAATGAAAATTATGATCTTGAGTGGTTGGTTTTATAATAGTTGTGTTTATTTCTTTCTATTATGTTTTGCTATTGGATGTATATGCACATGGCATTTAACATGTTTATTGATTCTCTCACACTATTGGATTTCTTCCTCTCCAACCTTTTCCTATATTGTAAATATGTTTGATATCCCTTTGCTGAATTGATTTAGTGCCTTTGGTGAAGAGAGTTGATAGTTAACTTATTTTCTTTTTTCTTTTCATTGATCTCTTAGATATTCTTCATTTTTGCTTTAAGTGGTACAATCTAAAATTTTCACTTTCACCATCGTCTTTGATCTGCTTCTATGTGGGCTTTACCCATTTGAGTATTGCCGCCAGTTTGTCTGTAATATTTCTTTAACATAGCTGGTTGTTCGGTGAACTTACTTTTTTGGGAAACTTTTCTTCCCCGTTTATACTTGATACAATGTTATCTATTAAGTTTTAACGATGCAGCCTACTTGAATTTTAGATGCTACATCTTCATCTGAATTTGATTTTGTTACTTTCTTCACCTTTTTTAGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCCTTCTCAGTGAAAAAGTTTCATTTTATCTCCGTGTTTCTTGATGAACTTTGTCTTCTATTCAAACTTAGACGTTTGCATGTTTATATATTTGTTTTATGATCCAATATCATGTCGTACACCATCTCCTCTAATTTGATCCATTTTGCTCAGTAACTCACGTGTTGATCTATATAGAGTCTATTGAAATGTGTGGTGCATTTGAATTTTTTGACCTTTTGTTTTATCTTTAAATTTAATCAATTAAAAAACCAAGCCTACGAAAAGAGGAAGCTCCCTCAACAAATAGAGATAGACTACAATCTCAATCTATAGATGGTTTCCTTTTGATACATTATTGTTTACTCCCAGTCTCATTCCAATTTTATAACCAGATAATTGTGTAATCTTCTTGTATCATCTTTGATTGTGAATTGTGCGGTGGGCTACTAAGTTACGGAAATGACACATTGTTTTTGACACTGTTCAAACAGGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTCGCAGATTGTTTCAGGTTACTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCTCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGGTGATTTTTCTTACTTTTCTTTATTTTTGTCTTTGTGTTAGTTTGCTAAGAAATTGTGTATTTGTACTTTATTTGCCTTTTCCACGTAGTTCAACAAACTTTTATTTCTTTTATTCAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTGGTTAATCTTAATGGTAATATAAGTCTTAGGAAAAGTTGGACCACTTAGATGGTTGTAGAAGGTTTGGAGGAAAATGATACGATATTTGGCTATTTGCTATGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCAGGATTATGTGTTCATATGATTTGGCTATGTTGTTATAAACTTATAGTTGATACCCTAACTAAGTATTGTAATCTATTTGATTAAATATTCAGATATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATATTGAGTATTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAACATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAAAATTACATGTAAAACCAGGAATTTTGGTTTACCATTTCTGCGTTTGGGTATGCCTGTACTGAAATTCATGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTTATTGCATTTTTTAGACCTAGTTGATTTCATTACCTTTTGAATATATAT

mRNA sequence

AAATGGAAAGTAAAATATTGCACTCTTTTTCATAAAAAAAAAAAATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCACGTAAAAGAACTCCTCCACTTCTCTCGTGAACCTTCCGGCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCAGCATTTCCGCGGACAGCTCACGCGACTCCGCCGAAGAACAACGAAAGGCGGCGGCGTTTTACCTAGCTCCTTCTGATTTTCCCGTTCCTGGCGCACCCTACGAAGTGACTTCCTCTCCTGAAACCCACGCACGAGCAAAACACTCTAAATTCCTTTCGAACTTAGGCTCTGGTGTTCGGTTTTGTGAAATCGAACACAATCAAAGAACTTTTGGGTTCCTTTTTGGTAAGATTTAAGCGTTTGCAGCTGAACTTGTATAGTAATTATGTCAGGAAGGTCAAAGGGATGCACCATTTACGTTGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTGGTTAATCTTAATGGTAATATAAGTCTTAGGAAAAGTTGGACCACTTAGATGGTTGTAGAAGGTTTGGAGGAAAATGATACGATATTTGGCTATTTGCTATGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCAGGATTATGTGTTCATATGATTTGGCTATGTTGTTATAAACTTATAGTTGATACCCTAACTAAGTATTGTAATCTATTTGATTAAATATTCAGATATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATATTGAGTATTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAACATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAAAATTACATGTAAAACCAGGAATTTTGGTTTACCATTTCTGCGTTTGGGTATGCCTGTACTGAAATTCATGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTTATTGCATTTTTTAGACCTAGTTGATTTCATTACCTTTTGAATATATAT

Coding sequence (CDS)

ATGTCAGGAAGGTCAAAGGGATGCACCATTTACGTTGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAGTAGATTATCCTCCTTACTAA

Protein sequence

MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY*
Homology
[Close]
BLAST of MELO3C022159 vs. Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R++  T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85


HSP 2 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 21/66 (31.82%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKPKGFAFAEYESEEIANYA 66
           G  I++GNLD  + +++LYD     G ++    I RD ++G  KG+AF  + S + ++ A
Sbjct: 99  GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158

Query: 67  VKLFSG 72
           ++  +G
Sbjct: 159 IEAMNG 164

[Close]
BLAST of MELO3C022159 vs. Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R++  T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85


HSP 2 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 21/66 (31.82%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKPKGFAFAEYESEEIANYA 66
           G  I++GNLD  + +++LYD     G ++    I RD ++G  KG+AF  + S + ++ A
Sbjct: 99  GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158

Query: 67  VKLFSG 72
           ++  +G
Sbjct: 159 IEAMNG 164

[Close]
BLAST of MELO3C022159 vs. Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-13
Identity = 32/81 (39.51%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R++  T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85


HSP 2 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 21/66 (31.82%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKPKGFAFAEYESEEIANYA 66
           G  I++GNLD  + +++LYD     G ++    I RD ++G  KG+AF  + S + ++ A
Sbjct: 99  GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158

Query: 67  VKLFSG 72
           ++  +G
Sbjct: 159 IEAMNG 164

[Close]
BLAST of MELO3C022159 vs. Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 31/78 (39.74%), Postives = 56/78 (71.79%), Query Frame = 1 

Query: 4  RSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R++  TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHKRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85


HSP 2 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVVDL-HIPRDKESGKPKGFAFAEYESEEIANYA 66
           G  I+VGNLD  V +++LYD     G ++ +  I RD +SG  KGFAF  + S E ++ A
Sbjct: 99  GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158

Query: 67  VKLFSG 72
           ++  +G
Sbjct: 159 LEAMNG 164

[Close]
BLAST of MELO3C022159 vs. Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 4  RSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R++  TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVNLHKRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91


HSP 2 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAV 66
           G  ++VGNLD  V +RVLYD     G++V        E+G+ KG+ F  Y+S E A+ A+
Sbjct: 98  GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157

Query: 67  KLFSGLVNLHKR-TLKFAVSGQDK 90
           +  +    ++K  T+ +A   + K
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGK 181

[Close]
BLAST of MELO3C022159 vs. TrEMBL
Match: A0A0A0KXV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 4.0e-83
Identity = 158/179 (88.27%), Postives = 161/179 (89.94%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 164
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 179

[Close]
BLAST of MELO3C022159 vs. TrEMBL
Match: A0A0A0KXV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.9e-65
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S  CT+YVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK++GKPKGFAFA YESEE
Sbjct: 291 MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 350

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFP---------------- 120
           IANYAVKLFSGLV+LH R LKFAVSGQDK SP ++AITSSS                   
Sbjct: 351 IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 410

Query: 121 --------TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRR 166
                   TYPENH++ALL  GLVNQ+NGYGSHLDNYNKEYSQRY  T LDSF QPKSR 
Sbjct: 411 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRC 470


HSP 2 Score: 205.7 bits (522), Expect = 4.5e-50
Identity = 113/190 (59.47%), Postives = 133/190 (70.00%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S   T+Y+GNLDERVSDRVLYDILIQAGRVVDL+IPRDKE+ KPKG+AFAEYE+EE
Sbjct: 1   MSGSSNS-TVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETEKPKGYAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDK------PSPVSNA----------------IT 120
           IA+YAVKLFSGLV L+ RTLKFA+SGQDK       SP SNA                  
Sbjct: 61  IADYAVKLFSGLVTLYNRTLKFAISGQDKLNTPPGISPTSNAPHKPRSNPIPINETERTL 120

Query: 121 SSSRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHD 169
           +SSRF ++P NH +A   PG+    NGYGS  D  N EYS+R  G  LDS  + +SRR+D
Sbjct: 121 ASSRFSSHPLNHSQAPPPPGVNIHSNGYGSPYDGKNFEYSRRVFGATLDSIGRSRSRRYD 180

[Close]
BLAST of MELO3C022159 vs. TrEMBL
Match: D7SN08_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00220 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.1e-47
Identity = 104/195 (53.33%), Postives = 131/195 (67.18%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MS +S GC++Y+GNLDERVSDRVLYDILIQAGRVVDL+IPRDKE+ +PKGFAFAEYE+EE
Sbjct: 1   MSAKS-GCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS------------------- 120
           IA+YAVKLFSGLV L+ RTLKFA+SGQDKPS  +   TS+S                   
Sbjct: 61  IADYAVKLFSGLVTLYNRTLKFAISGQDKPSSAAITPTSNSSLEPKPHPVPFNNMENSQH 120

Query: 121 --------RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPK 169
                   R   +P N+ +   +   ++Q N Y S LD ++ +YS+R  G  LDS ++ +
Sbjct: 121 SMGLRTPCRLAAHPVNYAQVPASSDTLHQPNRYSSQLDGHSYDYSRRVFGATLDSISRTR 180

[Close]
BLAST of MELO3C022159 vs. TrEMBL
Match: Q2I310_VITPS (RNA recognition motif-containing protein OS=Vitis pseudoreticulata PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.0e-46
Identity = 103/195 (52.82%), Postives = 131/195 (67.18%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MS +S GC++Y+GNLDERVSDRVLYDILIQAGRVVDL+IPRDKE+ +PKGFAFAEYE+EE
Sbjct: 1   MSAKS-GCSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS------------------- 120
           IA+YAVKLFSGLV L+ RTLKFA+SGQDKPS  +   TS+S                   
Sbjct: 61  IADYAVKLFSGLVTLYNRTLKFAISGQDKPSSAAITPTSNSSLEPKPHPVPFNNMENSQH 120

Query: 121 --------RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPK 169
                   R   +P N+ +   +   ++Q N Y S LD ++ +YS+R  G  LDS ++ +
Sbjct: 121 SMGLRTPCRLAAHPVNYAQVPASSDTLHQPNRYSSQLDGHSYDYSRRVFGATLDSISRTR 180

[Close]
BLAST of MELO3C022159 vs. TrEMBL
Match: K7N448_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G177100 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-46
Identity = 103/198 (52.02%), Postives = 132/198 (66.67%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S  C++Y+GNLDERV+DRVLYDILIQAGRVVDLHIP+DKES KPKGFAFAEYE+EE
Sbjct: 1   MSGNSN-CSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDK----------------------PSPVSNA-- 120
           IA+YAV+LFSGL+ L+ RTLKFA+SG+DK                      P P++N+  
Sbjct: 61  IADYAVRLFSGLITLYNRTLKFAISGRDKTTSNGSTAIAPTLNSSQRPRPYPVPINNSEN 120

Query: 121 ------ITSSSRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFN 169
                 +++  RF  YP N+ + +L   + +Q +GYGSH    N EYS+R  G  LDS +
Sbjct: 121 FQHPARLSTPDRFSDYPVNNSQ-VLPSRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSIS 180

[Close]
BLAST of MELO3C022159 vs. TAIR10
Match: AT4G10110.1 (AT4G10110.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-38
Identity = 91/178 (51.12%), Postives = 112/178 (62.92%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S  CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFPTYPENHLEALLNPGLV 120
           IA+YAVKLFSGLV+L+ RTLKFA+SGQDK    SN+  S  R    P++      +    
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ--SNSANSGHR--ARPQSLAFEHSDRAAY 120

Query: 121 NQFNGYGSHL---------------------DNYNKEYSQRYSGTNLDSFNQPKSRRH 158
           +    + S L                     +  + EYS+R  G+ LDS N  + RR+
Sbjct: 121 HHLERFSSQLISPPSPLPLDYTQEPPPPGVSNGASLEYSRRVLGSALDSINHSRPRRY 173

[Close]
BLAST of MELO3C022159 vs. TAIR10
Match: AT2G18510.1 (AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-14
Identity = 32/88 (36.36%), Postives = 61/88 (69.32%), Query Frame = 1 

Query: 4   RSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R++  T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHKRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107


HSP 2 Score: 47.8 bits (112), Expect = 7.9e-06
Identity = 33/126 (26.19%), Postives = 60/126 (47.62%), Query Frame = 1 

Query: 7   GCTIYVGNLDERVSDRVLYDILIQAGRVV-DLHIPRDKESGKPKGFAFAEYESEEIANYA 66
           G  +++GNLD  V +++LYD     G +  +  I RD ++G  +GF F  Y+S E ++ A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170

Query: 67  VKLFSG-LVNLHKRTLKFA----VSGQDKPSPVSNAITSSSRFPTYPENH-LEALLNPGL 126
           ++  +G  ++  + T+ +A      G+   +P    + +++        H L A+  P  
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSS 230

[Close]
BLAST of MELO3C022159 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 26/70 (37.14%), Postives = 36/70 (51.43%), Query Frame = 1 

Query: 2   SGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG   G  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267


HSP 2 Score: 34.7 bits (78), Expect = 6.9e-02
Identity = 19/62 (30.65%), Postives = 28/62 (45.16%), Query Frame = 1 

Query: 10  IYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLF 69
           ++VGNL   V    L  +   AG V  + +  DK +G+ +GF F    S      A + F
Sbjct: 93  LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query: 70  SG 72
           +G
Sbjct: 153 NG 154

[Close]
BLAST of MELO3C022159 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 9  TIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKL 68
          ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ AV+ 
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 69 FSG-LVNLHKRTLKFAVSG 87
            G +V+  + T++FA  G
Sbjct: 77 LDGRVVDGREITVQFAKYG 95

[Close]
BLAST of MELO3C022159 vs. TAIR10
Match: AT3G53460.4 (AT3G53460.4 chloroplast RNA-binding protein 29)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 24/70 (34.29%), Postives = 35/70 (50.00%), Query Frame = 1 

Query: 2   SGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG   G  +YVGNL   V D  L ++  + G+VV+  +  D++SG+ KGF F    S + 
Sbjct: 272 SGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 331

Query: 62  ANYAVKLFSG 72
              A+   +G
Sbjct: 332 VQKAINSLNG 341


HSP 2 Score: 35.8 bits (81), Expect = 3.1e-02
Identity = 19/65 (29.23%), Postives = 30/65 (46.15%), Query Frame = 1 

Query: 10  IYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLF 69
           ++VGNL   V    L  +   AG V  + +  DK +G+ +GF F    +      A + F
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160

Query: 70  SGLVN 75
           +G V+
Sbjct: 161 NGYVS 165

[Close]
BLAST of MELO3C022159 vs. NCBI nr
Match: gi|659119264|ref|XP_008459561.1| (PREDICTED: RNA-binding protein 7-like isoform X2 [Cucumis melo])

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFPTYPENHLEALLNPGLV 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFPTYPENHLEALLNPGLV
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFPTYPENHLEALLNPGLV 120

Query: 121 NQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 169
           NQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 121 NQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 168

[Close]
BLAST of MELO3C022159 vs. NCBI nr
Match: gi|659119260|ref|XP_008459559.1| (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-88
Identity = 168/191 (87.96%), Postives = 168/191 (87.96%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS------------------- 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS                   
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 ----RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 169
               RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

[Close]
BLAST of MELO3C022159 vs. NCBI nr
Match: gi|778707852|ref|XP_011656074.1| (PREDICTED: RNA-binding protein 7-like [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 169
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180

[Close]
BLAST of MELO3C022159 vs. NCBI nr
Match: gi|700197469|gb|KGN52646.1| (hypothetical protein Csa_5G648670 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 5.8e-83
Identity = 158/179 (88.27%), Postives = 161/179 (89.94%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 164
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 179

[Close]
BLAST of MELO3C022159 vs. NCBI nr
Match: gi|700197469|gb|KGN52646.1| (hypothetical protein Csa_5G648670 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 4.2e-65
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S  CT+YVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK++GKPKGFAFA YESEE
Sbjct: 291 MSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESEE 350

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFP---------------- 120
           IANYAVKLFSGLV+LH R LKFAVSGQDK SP ++AITSSS                   
Sbjct: 351 IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSHGYSNEISQYS 410

Query: 121 --------TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRR 166
                   TYPENH++ALL  GLVNQ+NGYGSHLDNYNKEYSQRY  T LDSF QPKSR 
Sbjct: 411 NHLSTSCRTYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFKQPKSRC 470


HSP 2 Score: 261.9 bits (668), Expect = 7.6e-67
Identity = 134/192 (69.79%), Postives = 147/192 (76.56%), Query Frame = 1 

Query: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG S  CT+YVGNLDERVSDRVLYDILIQAGRVVDLHIPRDK+SG PKGFAFA YESEE
Sbjct: 1   MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRFP---------------- 120
           IANYAVKLFSGLV+LH R LKFAVSGQDK SP ++A+TSSS                   
Sbjct: 61  IANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYS 120

Query: 121 --------TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRR 169
                   TYPENH++ALL  GLVNQ+NGY SH+DNYNKEYSQRY GT LDSF QPKSRR
Sbjct: 121 NHPSTSCRTYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFKQPKSRR 180

The following BLAST results are available for this feature:
BLAST of MELO3C022159 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SF3B4_MOUSE6.3e-1339.51Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1[more]
SF3B4_HUMAN6.3e-1339.51Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1[more]
SF3B4_RAT6.3e-1339.51Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1[more]
SF3B4_CAEEL3.1e-1239.74Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2[more]
SAP49_SCHPO1.6e-1138.37Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of MELO3C022159 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXV1_CUCSA4.0e-8388.27Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1[more]
A0A0A0KXV1_CUCSA2.9e-6569.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1[more]
D7SN08_VITVI6.1e-4753.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00220 PE=4 SV=... [more]
Q2I310_VITPS3.0e-4652.82RNA recognition motif-containing protein OS=Vitis pseudoreticulata PE=2 SV=1[more]
K7N448_SOYBN5.1e-4652.02Uncharacterized protein OS=Glycine max GN=GLYMA_20G177100 PE=4 SV=1[more]
BLAST of MELO3C022159 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10110.11.2e-3851.12 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G18510.14.6e-1436.36 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37220.13.8e-0837.14 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G64200.11.2e-0635.44 ortholog of human splicing factor SC35[more]
AT3G53460.42.1e-0634.29 chloroplast RNA-binding protein 29[more]
BLAST of MELO3C022159 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119264|ref|XP_008459561.1|3.1e-92100.00PREDICTED: RNA-binding protein 7-like isoform X2 [Cucumis melo][more]
gi|659119260|ref|XP_008459559.1|2.7e-8887.96PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo][more]
gi|778707852|ref|XP_011656074.1|3.0e-8789.13PREDICTED: RNA-binding protein 7-like [Cucumis sativus][more]
gi|700197469|gb|KGN52646.1|5.8e-8388.27hypothetical protein Csa_5G648670 [Cucumis sativus][more]
gi|700197469|gb|KGN52646.1|4.2e-6569.84hypothetical protein Csa_5G648670 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43490melon EST collection version 4.0transcribed_cluster
MU54886melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022159T1MELO3C022159T1mRNA
MELO3C022159T2MELO3C022159T2mRNA
MELO3C022159T3MELO3C022159T3mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU43490MU43490transcribed_cluster
MU54886MU54886transcribed_cluster