Carg24120 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24120
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Splicing factor 3b subunit 4
Location	Cucurbita_argyrosperma_scaffold_177 : 563651 .. 569417 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTATAACGAGGTTGAGAAGGTCAATTGGCTCTCTGACTTCACCATCCTTCCCTTTTCCTTTTGCCGTTTGAAAATTTGGCTTTCCGATTTGCATCTGAACTTGCAGACCAATCATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTATGTTTATTGTTGTCTCAATCCGTCTTTATTCGTGTTTTCTCTACCCTAATTCGTTGAATTTTTTCGTTTGTTTTTTAATCTTGATGTTGTTACTTCCGTGAAGTTTTGTGTGGTTGATTTATAAGAATCGTGTTTAATTTAATCATATTTGTTGATTCTCTCGCGGAGCTCTGTTTAGATTTTTAATGGCGGGTTCATACTTGAACAGAAAGAATTTGATTGTTTGCTGGATTTCTTCCTCCTCAACTTTTTTCTTCTGTTGGAACTATGTTTGATTTCTGTTTATATTGGCTTACTAGATTTGCTGCCTCTGGGTGGCGAGGGTTGGAAGTTGAACTTTAGATCTCTTAGATTATCTTCGTGTTTTTTGCTTAACTGGTTCAATGTTGAGGATTGTTGGGAGAGTCTCACATTGACTAATTTAGAGGATGATCATGAGTTTAGAAGTAAGGAATACTATCTCCATTGATACGAGACTTTTTGGGGATGCCCAAAGCAAAGCCTGAGAGCATATGCTCAAAATAGACAATATCATACCATTGTGGAGATATGTGATTCCTAACATGGTATCAGAGCCATGCTCTTAATTTAGCCCTGCCAATAGAATCCTCTAGTGTCGAACAAAGAAATTTCTAGCCTCGAAGGTGTGGTCAAAAGTGACTCATGTGTCAAACAAAGGGTGTACTTTGTTTGAGGGCTCCAGAGAAAGGAGTTGAGCCTCAATTAAGAAGGGGAGCCTTTCGAGTGCTACATAGACCTCAGGGGAGGCTCTATGGTGTACTTTGTTCGAGGAGAAGATTGTTGATGATTATTGGGAGGGAGACTCACATTGGCTAATTTAGAGGATAATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCATATATTCAAAGTGGACAATATCATACCATTGTGGAGATCTGTGATTCCATTCCAAACCTCTCGATCCTAATTTTCACTTTCCCCGTCATCTTTGATCTGCTTATGTAGGCTTCTGAGTCTGATTTTGTTACTTTCTCCACTTTCTGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTAGACTTGCACGTTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTATGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATGTAACTTTTTTCTTTCTCAACGCAAATTCTTCATTGTTTCTTTTTTATTGGTTTTTCTTGATCAACTCTGTTTCCTCTATTTTATGCGTTTTGATTCGTAACTCACTTTTGGATATAGATATTACTGGTCGTTTAAGATGTGCGGTGCATTTGAAATTTTAGTTTTAATTGACTTGTAATATTTTCCTTCATAGGCTTTATGTAGTATATTGCTAACTTCTTTGAAGCTTTAGAAATTACATTCCAATTGTATGATTTCATTCTTGTTATTTACAAAACTAGTTTGCATTAGAAGCAACCTTGTTATCATAATTAATTGACGGGAAGAACCAAGATATTCATGGATCATGATGAATTTAATCTAGTTTACTTTATATTACTATAATTTTGATACGACTTGGTTGGTAAACCATTGGCTTTCCAATTTTAGAGGACGAACACGAGCGTTGGTACATTCTTGAAAAAATGGAAGATATAAATTACTCTCTTCACTACAATTACTGATGACTTTGGTGAATAGGCCAGGTTTTTAGGTTCTTGGGCATGAAGATCAGGTTTGCAAGCTAAGAAAGTCTTTCTTTATATGACTTGAAACTTTCTTCCCGACAGTGAGTGGTACGGTACCTTAAGTTTCATCAAGCTATTAGCGGGATTTCGTTCGACGATCATTGTATTGAAACTCCAATAATGGATGGTGAGATTAGAATATTGTCAAACTATGTTTATGATATCCTTATTGCCGGAGTTAGATACTAAACGTTAATTAGAAAACAAAACAACGATTTAAATATATAATTTCATATATTAAAAATAATCTTTTAATCTGATTTTGGAAAAAATAGGAACAATATAATAAGAACAAGATAGTTACATAAAGATTCCTTTTCCAATCGTATATTTATTATTGATGATTTCATTTGATATATGACTGTAGTGTGAAGTCTCATACTTCCAATTGTATTATCAGATGAGTGTGCAATCTTCTTGTATAAGTTTTGATTGTGTGGGGAGTGATTAAGTTATGGGAATGACTTAGCTTTTGACTTTGTTCAAACAGGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACGCTGAGAACCATCGAGAAGGTGATTTTCCTTTATTTTTGTATTTTCTTAGTTAGTTTTGCTAAGGAATTGTGTGTTTTTTTTTTACTTTCTTGGTCTTTCCCACATGGGTTAAACAAATTTTTATTTCTTTTATTCAGCTCTTCTTCACCCTGGTTTAGTTAACCAATATAATGGGTATGGATTTCATTTGGATAACTATAATAACGAGCACAGTCAGCGATATTCTAGGACAACTTTGGATAGCTTTTACCAAACTAAATCACGTATCGTCTGACATGATACAGTTATCACTGCGGGCTCAGTTTTAACTAAGATATCAGCTAGTGCCTTCCATTTTGGTTAATCTCAAGTGAACTTTACTTTAGTGTGAACTTCTTAGTATTGGATTTGCCAGCTAGTGCTTCCCATATTGCTATGGTATCATGCTGCGTCTCAACAGTCATTGTGTAATTGTTTGCACGTGCAGTATGCATTAGGCAAAACTGACATCTAATCTTGAATAATTTAATAATATTTGTAATCGATGTATTAATAATTTCAGCATTTCTTTAAGGGTTAAATATTATGAAAGTATAAATGATTCTTTTCCCGGTGGCTGAAAGTAATAGCTTTTTGTTTGTGTATGTTGAATATGGTCTATGTATATCACTACAGTCATTGCGTGATTGTGCTTTAATATGCACGATGTGCATGTTGAATCTGAAGTTATGTCGTTATACTATTAATTGTGCATTTGACTTACATATAAGCTGAAGCTAATTTCACATAATATCTAGTGTATATGAACGATGTATTAAATCTAGAGCTTTCATGATTGAGTGGACAGTTGGATTCCTGTTTAAGATTATCCAAGGCAGTCTGACGGGACTGATTCTTTTCCGATAGTGGCTGATATATAATAGCTTTTTGTTTGTGTATGTTGAATATTTACTTGAGCCAATATATAATATACTTAATGCCGTGCCAACTACATTGGTGAAGAGGTGCTGCATTTTGGTATTGAGTATTGTCATTTCATGCTTTGGGAGATGAGATTGGTTCTATGGTTAAGGGAAGTATTTGTATTTACTATAGGCATTGACTAAATAAGCTAAGCTATACTGAAAATCAAATAAGGACTCCCCTAAATCTAGTGTATAATGAACCGAACAAGCCTTCCAATCTAAGAGCTTTCCATGGGGATTGAGTGGAAGTTGGAAAAACCTAGGAAGATTTCCAAGCAGTCTGACGGGATGAATACTAGATCGATAGGCTTCCTTTTATATAAAAAGTTCTTATTGTACCAACGTTCAAAGGCTAAGGTAGAAATGGTTTGAATGGCTAGAGATCCCTCCATTGCCCTTTCCCATAGCGTAAAGTTTTCAACTGACATTTCAGTGAAGTGGAAGCTAAGCCTACTTGAACGCCCAAGCATTTTGGTTTGAGTTCATCTGTTCATGTTCTAGACCTCGTTGTGTGCATACCCATAGAACTGAAATACTAATGGTTGTAGTGTGCAGCAATAATAATAAATCTTAAGAATATCATAGCTGTTTGTCATTTGCCCTGCCCCTTAAGATAGAGTACGAGAAAAAGTCATACAAAGAAAAAAAATAACATTTTCGCTGAAAAAAAAAAAAAAAATAATAAAACTTATCCATAAAAGTTCTCCAAAATGGGAGAGTTTGAGAACATGACTATAACGGGTCCAAACGTCATTCCACGCTAAGCTAATATATTAGTTTTTTCTTTTGAGCTTTTTCTGTTTGCAAAGCCACAGGATGTTTAAAACATAGTCTGCTAGGACAAATGGGAGTAGGTGTTACACAAGTTACACACTTATAAATTAATGTTTCGTTTCTCCCTCCCTACTGATTCTTGTGGGATACTTAGTTTCACACAATCCAACCCCTTACAGGGACCATGCGTCCTCGGCGATGGACTGTCGTTTTATACCCATAAAATATATTTTCTCTACCAATCAAATAGTTGGAAAACCTGCCAGCTAAATCAGAACTTCCTCTTTGAGCCTCTCTGTCTTTGTTGACAACATTTCTTTGAATGTGTCCACGCTCCTCGTTTGGGGCTCAGACTCCTTCCTTGTTGGCACACGGTCGCCCGGTGTTTAGCTCTAATACCATCTGTACACAGCCCAAAGCCTAATCTGCTAAGCAGATATTGTCCTCTTTGGGCTTCCCCCTTTCAAGGCTTTCCCTCAAGGTTTTTAAAATGCGTTCTGCTTCAGGGAGAAGGTTTCCAACACAACTTAATTAACGAGTTCGTATTCTCTCTTCCCTTAACCTGATGTGAGGATCTTTATTTACATGACATCTGCTTTTTAATTGCATTTATTTAGTAGACCTAGTTGTCAGTCACTGCAACATTTTATTTGTTTTGAGATATTATGATGTTTGATTTTTTAAATATTAATACATTTGTTATTGTTAATAATTTGTTTAGATTTATGTTTATCAGTTTTTATCTTAGAGAACAATGTATGTATAATAAGTATGGACGCAATGTAAAGATATTTATAAAAAACCTTCGATTTACACACAAGCAAAAGTATGTCTTATTTGTCTTTCTGTCAAGCATTAATTTTTGTAAGACGAGAATAATCATTAATCGTGTACAATTTATTATTCATATTATGAATATTTAACTAGGATTACCATAACATTTTTTTTGTTTTGTATTTTAATCACCAAATTGTGTGCCTTATGGATTTAAGGTATATTGAAAGGCTTTCTTCTTTGAGAAGGATCACGTTCTGAAGGAGGTCCATTTTGTTATTTTCTGTGAGATTGTAGATAAAAAATTTGGTGATCAGGCTAGTGGCAGCTCTATCAGAGGATCATTATAGTGGTTTCTATCAAAATTCAAGAATCTAAATGCCTCCTTTCTTATCTGAGCTCCAAGTTCCTATCTGTAGTTGCCCATTAGTTTTACTGCTCTTTGTATCATAATATGAATTTGTTCCTTAACTTTTATTCCACTCTTTTCATTGCTTGTGAAATCTGTATTGATGTAAGATATACACGTTTGTTTGTATGTATATCAAATATCTTGCTCTTTGGTCTTCCTTGTAAGGTTTCGGCACATAACTGATTGTAAAGTTTTGATATAAAATTATATT

mRNA sequence

AAAGCTATAACGAGGTTGAGAAGGTCAATTGGCTCTCTGACTTCACCATCCTTCCCTTTTCCTTTTGCCGTTTGAAAATTTGGCTTTCCGATTTGCATCTGAACTTGCAGACCAATCATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTAGACTTGCACGTTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTATGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACGCTGAGAACCATCGAGAAGATAAAAAATTTGGTGATCAGGCTAGTGGCAGCTCTATCAGAGGATCATTATAGTGGTTTCTATCAAAATTCAAGAATCTAAATGCCTCCTTTCTTATCTGAGCTCCAAGTTCCTATCTGTAGTTGCCCATTAGTTTTACTGCTCTTTGTATCATAATATGAATTTGTTCCTTAACTTTTATTCCACTCTTTTCATTGCTTGTGAAATCTGTATTGATGTAAGATATACACGTTTGTTTGTATGTATATCAAATATCTTGCTCTTTGGTCTTCCTTGTAAGGTTTCGGCACATAACTGATTGTAAAGTTTTGATATAAAATTATATT

Coding sequence (CDS)

ATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTAGACTTGCACGTTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTATGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACGCTGAGAACCATCGAGAAGATAAAAAATTTGGTGATCAGGCTAGTGGCAGCTCTATCAGAGGATCATTATAG

Protein sequence

MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSNRLSTSCRFSAYAENHREDKKFGDQASGSSIRGSL

Homology

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BLAST of Carg24120 vs. NCBI nr
Match: XP_023535523.1 (spliceosome-associated protein 49-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.9 bits (751), Expect = 3.2e-76
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           DITNYAIKLF GLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120

Query: 121 RLSTSCRFSAYAENHREDKKFGDQASGSSIRGSL 155
           RLSTSCRFSAY ENHREDK FGDQASGSS RGSL
Sbjct: 121 RLSTSCRFSAYPENHREDKTFGDQASGSSFRGSL 154

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BLAST of Carg24120 vs. NCBI nr
Match: XP_022973533.1 (RNA-binding protein 7-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 3.3e-73
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRSSNRCTLYVGNLDERV+DKVLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPS-----SSSNISHKSRSHIVSDYSNET 120
           DITNYAIKLF GLVTLHNRTLKFAVSGQDKPSPS     SSSNISHKSRSHIVS+YSNET
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQYSNRLSTSCRFSAYAENHREDKKFGDQASGSSIRGSL 155
           SQYSNRLSTSCRFSAY ENH+EDK FGDQASGSSIRGSL
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQEDKTFGDQASGSSIRGSL 159

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BLAST of Carg24120 vs. NCBI nr
Match: XP_022925403.1 (RNA-binding protein 7-like [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 7.1e-68
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           DITNYAIKLF GLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120

Query: 121 RLSTSCRFSAYAENHRE 138
           RLSTSCRFSAY ENHRE
Sbjct: 121 RLSTSCRFSAYPENHRE 137

[Close]

BLAST of Carg24120 vs. NCBI nr
Match: XP_023535522.1 (splicing factor 3B subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 7.1e-68
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           DITNYAIKLF GLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120

Query: 121 RLSTSCRFSAYAENHRE 138
           RLSTSCRFSAY ENHRE
Sbjct: 121 RLSTSCRFSAYPENHRE 137

[Close]

BLAST of Carg24120 vs. NCBI nr
Match: XP_022973532.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64
Identity = 131/142 (92.25%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRSSNRCTLYVGNLDERV+DKVLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYENE
Sbjct: 1   MSGRSSNRCTLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPS-----SSSNISHKSRSHIVSDYSNET 120
           DITNYAIKLF GLVTLHNRTLKFAVSGQDKPSPS     SSSNISHKSRSHIVS+YSNET
Sbjct: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNET 120

Query: 121 SQYSNRLSTSCRFSAYAENHRE 138
           SQYSNRLSTSCRFSAY ENH+E
Sbjct: 121 SQYSNRLSTSCRFSAYPENHQE 142

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BLAST of Carg24120 vs. TAIR10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-36
Identity = 74/118 (62.71%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSG S+  CT+Y+GN+DERVSD+VLYDI+IQAGRV+DLH+PRDKE+ KPKGFAFAEYE E
Sbjct: 1   MSGTSN--CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQY 119
           +I +YA+KLF GLV+L+NRTLKFA+SGQDK   S+S+N  H++R   ++   ++ + Y
Sbjct: 61  EIADYAVKLFSGLVSLYNRTLKFAISGQDK-LQSNSANSGHRARPQSLAFEHSDRAAY 115

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BLAST of Carg24120 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 32/98 (32.65%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 2   SGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENED 61
           S   +   T+YVG LD ++S+++L+++ +QAG VV+++VP+D+ +   + + F EY +E+
Sbjct: 18  SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77

Query: 62  ITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNI 100
             +YAIK+   ++ LH + ++   + QDK S    +N+
Sbjct: 78  DADYAIKVL-NMIKLHGKPIRVNKASQDKKSLDVGANL 114

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BLAST of Carg24120 vs. TAIR10
Match: AT1G71800.1 (cleavage stimulating factor 64)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
          M+  SS R  ++VGN+    +++ L +I  + G VV   +  D+E+GKPKG+ F EY++E
Sbjct: 1  MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60

Query: 61 D 62
          +
Sbjct: 61 E 61

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BLAST of Carg24120 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 29/88 (32.95%), Postives = 45/88 (51.14%), Query Frame = 0


Query: 9   CTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAI- 68
           C+LYVG+LD  V+D  LYD   +  +VV + V RD  +    G+ +  Y N D    A+ 
Sbjct: 46  CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105

Query: 69  KLFYGLVTLHNRTLKFAVSGQDKPSPSS 96
           KL Y    L+ + ++   S +D  +  S
Sbjct: 106 KLNYSY--LNGKMIRITYSSRDSSARRS 131

[Close]

BLAST of Carg24120 vs. TAIR10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 31/98 (31.63%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 7   NRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYA 66
           N   +YVG +   +++  L  +  Q G +VD+++ RDK +GK KGFAF  YE++  T  A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 67  IKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSR 105
           +    G + L  RT+K    G  K           ++R
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQNR 130

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BLAST of Carg24120 vs. Swiss-Prot
Match: sp|O14102|SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+Y+GNLDE+V+D +L+++ +QAG VV++H+PRD+      GF F E+ +E    YA ++
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 70 FYGLVTLHNRTLKFAVSGQDK 91
              V L  + ++   + QD+
Sbjct: 72 L-NQVKLFGKPIRVNRASQDR 91

[Close]

BLAST of Carg24120 vs. Swiss-Prot
Match: sp|Q15427|SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 28/73 (38.36%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FYGLVTLHNRTLK 83
             ++ L+ + ++
Sbjct: 74 M-NMIKLYGKPIR 85

[Close]

BLAST of Carg24120 vs. Swiss-Prot
Match: sp|Q8QZY9|SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 28/73 (38.36%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FYGLVTLHNRTLK 83
             ++ L+ + ++
Sbjct: 74 M-NMIKLYGKPIR 85

[Close]

BLAST of Carg24120 vs. Swiss-Prot
Match: sp|Q6AYL5|SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-11
Identity = 28/73 (38.36%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FYGLVTLHNRTLK 83
             ++ L+ + ++
Sbjct: 74 M-NMIKLYGKPIR 85

[Close]

BLAST of Carg24120 vs. Swiss-Prot
Match: sp|Q09442|SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-11
Identity = 30/90 (33.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 10  TLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENEDITNYAIKL 69
           T+YVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  E+  +YAIK+
Sbjct: 14  TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73

Query: 70  FYGLVTLHNRTLKFAVSGQDKPSPSSSSNI 100
              ++ L+ + +K   +   + +    +NI
Sbjct: 74  L-NMIKLYGKPIKVNKASAHEKNMDVGANI 102

[Close]

BLAST of Carg24120 vs. TrEMBL
Match: tr|A0A1S4E2I0|A0A1S4E2I0_CUCME (RNA-binding protein 7-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.2e-51
Identity = 108/138 (78.26%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRS   CT+YVGNLDERVSD+VLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRSKG-CTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLF GLV LH RTLKFAVSGQDKPSP S++ I+  SRS IVS YSNE SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNA-ITSSSRSQIVSGYSNEISQYSN 120

Query: 121 RLSTSCRFSAYAENHRED 139
           R S+SCRF  Y ENH E+
Sbjct: 121 RFSSSCRFPTYPENHLEE 136

[Close]

BLAST of Carg24120 vs. TrEMBL
Match: tr|A0A1S3CAZ4|A0A1S3CAZ4_CUCME (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.9e-51
Identity = 108/137 (78.83%), Postives = 118/137 (86.13%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGRS   CT+YVGNLDERVSD+VLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRSKG-CTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLF GLV LH RTLKFAVSGQDKPSP S++ I+  SRS IVS YSNE SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNA-ITSSSRSQIVSGYSNEISQYSN 120

Query: 121 RLSTSCRFSAYAENHRE 138
           R S+SCRF  Y ENH E
Sbjct: 121 RFSSSCRFPTYPENHLE 135

[Close]

BLAST of Carg24120 vs. TrEMBL
Match: tr|A0A0A0KXV1|A0A0A0KXV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 102/137 (74.45%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSGR SN CT+Y+GNLDE+VSD+VLYDILIQAGRVVDLH+PRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGR-SNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLF GLV LH RTLKFAVSGQDKPSP S++ I+  SRSH       E SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNA-ITSSSRSH-------EISQYSN 120

Query: 121 RLSTSCRFSAYAENHRE 138
           R S SCRF  Y ENH E
Sbjct: 121 RFSPSCRFPTYPENHLE 128

[Close]

BLAST of Carg24120 vs. TrEMBL
Match: tr|A0A1S3CA12|A0A1S3CA12_CUCME (splicing factor 3B subunit 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498659 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.6e-46
Identity = 105/143 (73.43%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSG  SN CT+YVGNLDERVSD+VLYDILIQAGRVVDLH+PRDK+SG PKGFAFA YE+E
Sbjct: 1   MSG-GSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSP-----SSSSNISHKSRSHIVSDYSNET 120
           +I NYA+KLF GLV+LH+R LKFAVSGQDK SP     +SSSN+SHKSRSH    YSNE 
Sbjct: 61  EIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEI 120

Query: 121 SQYSNRLSTSCRFSAYAENHRED 139
           SQYSN  STSCR   Y ENH +D
Sbjct: 121 SQYSNHPSTSCR--TYPENHVQD 137

[Close]

BLAST of Carg24120 vs. TrEMBL
Match: tr|A0A1S3CBQ3|A0A1S3CBQ3_CUCME (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 104/140 (74.29%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHVPRDKESGKPKGFAFAEYENE 60
           MSG  SN CT+YVGNLDERVSD+VLYDILIQAGRVVDLH+PRDK+SG PKGFAFA YE+E
Sbjct: 1   MSG-GSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESE 60

Query: 61  DITNYAIKLFYGLVTLHNRTLKFAVSGQDKPSP-----SSSSNISHKSRSHIVSDYSNET 120
           +I NYA+KLF GLV+LH+R LKFAVSGQDK SP     +SSSN+SHKSRSH    YSNE 
Sbjct: 61  EIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEI 120

Query: 121 SQYSNRLSTSCRFSAYAENH 136
           SQYSN  STSCR   Y ENH
Sbjct: 121 SQYSNHPSTSCR--TYPENH 134

The following BLAST results are available for this feature:

BLAST of Carg24120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535523.1	3.2e-76	96.75	spliceosome-associated protein 49-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022973533.1	3.3e-73	92.45	RNA-binding protein 7-like isoform X2 [Cucurbita maxima]	[more]
XP_022925403.1	7.1e-68	97.81	RNA-binding protein 7-like [Cucurbita moschata]	[more]
XP_023535522.1	7.1e-68	97.81	splicing factor 3B subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022973532.1	2.1e-64	92.25	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10110.1	2.3e-36	62.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	4.7e-13	32.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G71800.1	2.9e-07	37.70	cleavage stimulating factor 64	[more]
AT2G23350.1	1.1e-06	32.95	poly(A) binding protein 4	[more]
AT3G47120.1	1.5e-06	31.63	RNA recognition motif (RRM)-containing protein	[more]

BLAST of Carg24120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O14102\|SAP49_SCHPO	3.2e-11	37.04	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
sp\|Q15427\|SF3B4_HUMAN	3.2e-11	38.36	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
sp\|Q8QZY9\|SF3B4_MOUSE	3.2e-11	38.36	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
sp\|Q6AYL5\|SF3B4_RAT	3.2e-11	38.36	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
sp\|Q09442\|SF3B4_CAEEL	5.5e-11	33.33	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]

BLAST of Carg24120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E2I0\|A0A1S4E2I0_CUCME	5.2e-51	78.26	RNA-binding protein 7-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
tr\|A0A1S3CAZ4\|A0A1S3CAZ4_CUCME	8.9e-51	78.83	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
tr\|A0A0A0KXV1\|A0A0A0KXV1_CUCSA	1.3e-46	74.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
tr\|A0A1S3CA12\|A0A1S3CA12_CUCME	8.6e-46	73.43	splicing factor 3B subunit 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1S3CBQ3\|A0A1S3CBQ3_CUCME	2.5e-45	74.29	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498659 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24120-RA	Carg24120-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..84 e-value: 2.5E-16 score: 70.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..82 e-value: 2.1E-14 score: 53.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 9..88 score: 14.522
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 3..99 e-value: 3.7E-19 score: 70.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..154
None	No IPR available	PANTHER	PTHR45284	FAMILY NOT NAMED	coord: 7..140
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 5..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24120	Cla012440	Watermelon (97103) v1	carwmB0676
Carg24120	Csa5G648670	Cucumber (Chinese Long) v2	carcuB0698
Carg24120	MELO3C022159	Melon (DHL92) v3.5.1	carmeB0677
Carg24120	ClCG08G001170	Watermelon (Charleston Gray)	carwcgB0654
Carg24120	CSPI05G30740	Wild cucumber (PI 183967)	carcpiB0710
Carg24120	Cucsa.237370	Cucumber (Gy14) v1	carcgyB0756
Carg24120	CmaCh01G008680	Cucurbita maxima (Rimu)	carcmaB0954
Carg24120	CmaCh09G013000	Cucurbita maxima (Rimu)	carcmaB0953
Carg24120	CmoCh01G009110	Cucurbita moschata (Rifu)	carcmoB0930
Carg24120	CmoCh09G012650	Cucurbita moschata (Rifu)	carcmoB0929
Carg24120	Lsi08G001040	Bottle gourd (USVL1VR-Ls)	carlsiB618
Carg24120	Cp4.1LG02g10920	Cucurbita pepo (Zucchini)	carcpeB0953
Carg24120	Cp4.1LG06g09810	Cucurbita pepo (Zucchini)	carcpeB0954
Carg24120	CsGy5G030090	Cucumber (Gy14) v2	carcgybB0674
Carg24120	MELO3C033524.2	Melon (DHL92) v3.6.1	carmedB0689
Carg24120	CsaV3_5G039770	Cucumber (Chinese Long) v3	carcucB0712
Carg24120	Cla97C08G145510	Watermelon (97103) v2	carwmbB0704
Carg24120	Bhi06G000179	Wax gourd	carwgoB0793

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24120	Silver-seed gourd	carcarB201