CmoCh09G012650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G012650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Splicing factor 3B subunit 4
Location	Cmo_Chr09 : 11068524 .. 11072130 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTAGAGATTTGCGGCTGAAATACAGACGCCATTATAAATCGACGCGGCAAAATCAAAGCTATAACGAGGTTGAGAAGGTCAATTGGCTCTCTGACTTCACCATCCTTCCCTTTTCCTTTTGCCGTTTGAAAATTTGGCTTTCCGATTTGCATCTGAACTTGCAGACCAATCATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTATGTTTATTGTTGTCTCAATCCGTCTTTATTCGTGTTTTCTCTACCCTAATTCGTTGAACTTTTTCGTTTGCGTTTTAATCTTGATGTTGTTACTTCCGTGAAGTTTTGTGTGGTTGATTTATAAGAATTGTGTTTAATTTAATCATATTTGTTGATTCTCTCGCGGAGCTCTGTTTAGATTTTTAATGGCGGGTTCATACTTGAACAGAAAGAATTTGATTGTTTGCTGGATTTCTTCCTCCTCAACTTTTTTCTTCTGTTGGAACTATGTTTGATTTCTGTTTATATTGGCTTACTAGATTTGCAGCCTCTGGGTGGCGAGGGTTGGAAGTTGAACGTTAGATCTCTTAGATTATCTTCGTGTTTTTTGCTTATCTGGTTCATATTCAGGATGGTTGGGAGAGGCCCACGTTGGCTAATTTAGAGGATGATCATGAGTTTAGAAGTAAGGAATACTATCTCCATTGGTATGAGGTATTTTGGAGAAGCCCAAAGCAAATCCTGAGAGCATATGCTCAAAGTGGACAATATCATACCATTTTGGAGATATGTGATTCTTAACATGGTATTAGAGCCATCCCTTAATTTAGCTATGTCAATAGAATCCTCAAGTGTCGAACAAATAAATTGCTAGCCTCAAAGGTGTAGTCAAAAGTGACTCATATATTGAAAAAAGGGTGTACTTTGTTCGAGGGGCTCTAGAGAAAAGAGTCGAGTCTCGATTAAGGGGAGGCTGTTCGAGGGCTACATACATAGACCTCAGGGGAGGCTTTATGGTGTACTTTATTTGAGGGGAGAATTGTTGGGAGAGAATACATCTCCATTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGGCAATATCATACTATTGTGGATATCCGTGATTCCTAACATGGTATTAGAGCAATGCCCTTAATTTAGCCACGTCAATAGAATCCTCAAGTGTCGAATAAAGAAATTGCTAGCCTCGAAGGTATAGTCAAAAGTGACTCATGTGTCGAACAAAGGGTGTACTTTGTTTGAGGACTACAGAGAAAGGAGTCGAGCTTCAATTAAGGGGAGACTGATCGAGGGCTACATAGACTTCAGGGGAGGCTCGATGGTGTATTTTGTTCGAGGGAATTGTTGGGAGAGAGTCCCACATTGGCCAATTAGAGGATGATCATGGGTTTTAAGTAAGGAATATATCTCCATTGATATGAGGCCCTTTGAGAAAGCCTAAAGCAAAGTCACGAGGGCATATGCTCAAAATGGATAATGTCATACCTTCGTGGAGATATGTGATTCCTAACAGTTGAATCCTAATTTTCACTTTCCCCATCATCTTTGATCTGCATATGTAGGCTTCTGAGTCTGATTTTGTTACTTTCTCCACTTTCTGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTCGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTCTGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATGTAACTTTTTTCTTTCTCAACGCAAATTCTTCATTGTTTCTTTTTTATTGGTTTTTCTTGATCAACTCTGTTTCCTCTATTTTATGCGTTTTGATTCGTAACTCACTTTTGGATATAGATCTTACTGGTCTTTTAAGATGTGCGGTGCATTTGAAATTTTAGTTTTAATTGACTTGTAATATTTTCCTTCATAGGCTTTATGTAGTATCTTGCTAACTTCTTTGAAGCTTTAAAAATTACATTCCAATTATATGATTTCATTCTTGTTATTTACAAAACTAGTTTGCATTAGAAGCAACCTTGTTATCATAATTAATTGACGGGAAGAACCAAGATATTCATGGATCATGATGAATTTAATCTAGTTTACTTTATATTACTAGAATTTTGATATGACTTGGTTGGAGAACCATTGGCTTTCCAATTTTAGAGGACGAACACAAGCGTTGGTACATTATTGAAAAAAAAAGAAAAAAGAAAAAGAAAAAATGGAAGATATAAATTACTCTCTTCACTACAATTACTGATGACTTTGGTGAATAGGCTAGGTTTTTAGGTTCTTGGGCATGAAGATAAGGTTTGCAAGCTAAGAAGTCTTTCTTTATATGACTTGAAACTTTCTTCCCAAGAGTGGTACCTTAAGTTTCATCAAGCTATTAGCGATATGGGATTTCGAATGAATTTCGACGATCATTGTCTTGAAACTCGAATAATGGATGGTGAGATTAGAATATTGTCAAACTATGTTTATGATATCCTTATTGCCGGAAATTCCTTGTTTGCCATAAATCGAACTCAAAATTGCTCAAGTGGGCTGTTGGGCGTAATCGTAAGAAACACTTTTCATTTCATCCCTGTAGTTCCGCTTCTTGCTCGAAAAATGAAGAAAGACTTGTCAGAAATCACCGGTTGGGTTGGTCCAACCAAGAAAGGGATGAGAGTCTGGGGGCAAACAGAAAAGCATATTGAAGTTTGGAGAATTAAGTTAGATACTAAAACATTATTAGAAAACCAAAACAAGTTTAAATATATAATTTCATATATTAAAAATAATCTTTTAATCTGATTTTGGAAAAAATAGGAACAATATAAGAAGAACAAGATAGTTACATAAAGATTCCTTTTCCAATCGTATATTTATTATCGATGATTTCATTTGATATATGACTGTAGTGTGAAGTCTCATACTTCCAATTGTATTATCAGATGAGTGTGCAATCTTCTTGTATCAGTTTTGATTGTGTGGGGAGTGATTAAGTTATGGGAATGACTTAGCTTTTGACTTTGTTCAAACAGGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACCCTGAGAACCATCGAGAAGGTGATTTTCCTTTATTTTTGTATTTTCTTAGTTAGTTTTGCTAAGGAATTGTGTGTTTTTTTTTTTACTTTCTTGGTCTTTCCCACATGGGTTAAACAAATTTTTATTTCTTTTATTCAGCTCTTCTTCACCCTGGTTTAGTTAACCAATATAATGGGTATGGATTTCATTTGGATAACTATAATAACGAGCACAGTCAGCGATATTCTAGGACAACTTTGGATAGCTTTTACCAAACTAAATCACGTCGCCATGATACGAGTTATCCAGTATACTATCCTCCTCACGAACTTTTGAACTAA

mRNA sequence

TTTTTTTAGAGATTTGCGGCTGAAATACAGACGCCATTATAAATCGACGCGGCAAAATCAAAGCTATAACGAGGTTGAGAAGGTCAATTGGCTCTCTGACTTCACCATCCTTCCCTTTTCCTTTTGCCGTTTGAAAATTTGGCTTTCCGATTTGCATCTGAACTTGCAGACCAATCATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTCGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTCTGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACCCTGAGAACCATCGAGAAGCTCTTCTTCACCCTGGTTTAGTTAACCAATATAATGGGTATGGATTTCATTTGGATAACTATAATAACGAGCACAGTCAGCGATATTCTAGGACAACTTTGGATAGCTTTTACCAAACTAAATCACGTCGCCATGATACGAGTTATCCAGTATACTATCCTCCTCACGAACTTTTGAACTAA

Coding sequence (CDS)

ATGTCCGGAAGATCATCAAATCGCTGCACCCTTTACGTAGGTAATTTGGATGAAAGGGTAAGCGACAAGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTCGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTTTGCTTTTGCAGAATATGAAAATGAGGACATTACCAACTATGCTATTAAGCTTTTCTCTGGTCTCGTGACTCTTCATAATCGTACCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCCAGTTCATCATCAAATATATCTCATAAATCGAGGTCACATATTGTTTCAGATTACTCCAATGAAACATCTCAGTATTCGAATCGCTTGTCAACGTCGTGCAGGTTTTCAGCGTACCCTGAGAACCATCGAGAAGCTCTTCTTCACCCTGGTTTAGTTAACCAATATAATGGGTATGGATTTCATTTGGATAACTATAATAACGAGCACAGTCAGCGATATTCTAGGACAACTTTGGATAGCTTTTACCAAACTAAATCACGTCGCCATGATACGAGTTATCCAGTATACTATCCTCCTCACGAACTTTTGAACTAA

Homology

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BLAST of CmoCh09G012650 vs. Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-11
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+Y+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+ +E    YA ++
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 70 FSGLVTLHNRTLKFAVSGQDK 91
           +  V L  + ++   + QD+
Sbjct: 72 LN-QVKLFGKPIRVNRASQDR 91

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BLAST of CmoCh09G012650 vs. Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 28/73 (38.36%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FSGLVTLHNRTLK 83
           + ++ L+ + ++
Sbjct: 74 MN-MIKLYGKPIR 85

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BLAST of CmoCh09G012650 vs. Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 28/73 (38.36%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FSGLVTLHNRTLK 83
           + ++ L+ + ++
Sbjct: 74 MN-MIKLYGKPIR 85

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BLAST of CmoCh09G012650 vs. Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11
Identity = 28/73 (38.36%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 10 TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69
          T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ +E+  +YAIK+
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73

Query: 70 FSGLVTLHNRTLK 83
           + ++ L+ + ++
Sbjct: 74 MN-MIKLYGKPIR 85

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BLAST of CmoCh09G012650 vs. Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-11
Identity = 30/90 (33.33%), Postives = 60/90 (66.67%), Query Frame = 1


Query: 10  TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69
           T+YVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  E+  +YAIK+
Sbjct: 14  TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73

Query: 70  FSGLVTLHNRTLKFAVSGQDKPSPSSSSNI 100
            + ++ L+ + +K   +   + +    +NI
Sbjct: 74  LN-MIKLYGKPIKVNKASAHEKNMDVGANI 102

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BLAST of CmoCh09G012650 vs. TrEMBL
Match: A0A0A0KXV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.2e-72
Identity = 144/188 (76.60%), Postives = 160/188 (85.11%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSGRS N CT+Y+GNLDE+VSD+VLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRS-NGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLFSGLV LH RTLKFAVSGQDKPSP S++ I+  SRSH       E SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNA-ITSSSRSH-------EISQYSN 120

Query: 121 RLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSR 180
           R S SCRF  YPENH EALL+PGLVNQ+NGYG HLDNYN E+SQRYS T LDSF Q KSR
Sbjct: 121 RFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSR 179

Query: 181 RHDTSYPV 189
           RHD+S+P+
Sbjct: 181 RHDSSFPM 179

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BLAST of CmoCh09G012650 vs. TrEMBL
Match: W9SHM1_9ROSA (Splicing factor 3B subunit 4 OS=Morus notabilis GN=L484_012633 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 116/197 (58.88%), Postives = 144/197 (73.10%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG S++  T+Y+GNLDERVSD+VLYDILIQAGRVVDL+IPRDKE+ KPKG+AFAEYE E
Sbjct: 1   MSGSSNS--TVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETEKPKGYAFAEYETE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDK----PSPSSSSNISHKSRSHIVSDYSNETS 120
           +I +YA+KLFSGLVTL+NRTLKFA+SGQDK    P  S +SN  HK RS+ +    NET 
Sbjct: 61  EIADYAVKLFSGLVTLYNRTLKFAISGQDKLNTPPGISPTSNAPHKPRSNPIP--INET- 120

Query: 121 QYSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQ 180
               R   S RFS++P NH +A   PG+    NGYG   D  N E+S+R    TLDS  +
Sbjct: 121 ---ERTLASSRFSSHPLNHSQAPPPPGVNIHSNGYGSPYDGKNFEYSRRVFGATLDSIGR 180

Query: 181 TKSRRHDTSYPVYYPPH 194
           ++SRR+DTS P+ YPP+
Sbjct: 181 SRSRRYDTSDPISYPPY 189

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BLAST of CmoCh09G012650 vs. TrEMBL
Match: D7SN08_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00220 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 108/196 (55.10%), Postives = 144/196 (73.47%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MS +S   C++Y+GNLDERVSD+VLYDILIQAGRVVDL+IPRDKE+ +PKGFAFAEYE E
Sbjct: 1   MSAKSG--CSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDRPKGFAFAEYETE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSS---SSNISHKSRSHIVSDYSNETSQ 120
           +I +YA+KLFSGLVTL+NRTLKFA+SGQDKPS ++   +SN S + + H V   + E SQ
Sbjct: 61  EIADYAVKLFSGLVTLYNRTLKFAISGQDKPSSAAITPTSNSSLEPKPHPVPFNNMENSQ 120

Query: 121 YSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQT 180
           +S  L T CR +A+P N+ +       ++Q N Y   LD ++ ++S+R    TLDS  +T
Sbjct: 121 HSMGLRTPCRLAAHPVNYAQVPASSDTLHQPNRYSSQLDGHSYDYSRRVFGATLDSISRT 180

Query: 181 KSRRHDTSYPVYYPPH 194
           +SR HD+S P+ YP +
Sbjct: 181 RSRYHDSSNPITYPSY 194

[Close]

BLAST of CmoCh09G012650 vs. TrEMBL
Match: A0A0D2V1V5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046700 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 109/197 (55.33%), Postives = 142/197 (72.08%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG SS  C++Y+GNLDERVSD+VLYDILIQAGRVVDL+IPRDKE+ KPKGFAF EYE E
Sbjct: 1   MSGNSS--CSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYETE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPS------SSSNISHKSRSHIVSDYSNE 120
           D+ +YA++LFSGLVTL+NRTLKFA+SGQDK S +       ++N S+KSR +       E
Sbjct: 61  DVADYAVRLFSGLVTLYNRTLKFAISGQDKSSQNPANAAMPATNSSYKSRHYHGVVNHME 120

Query: 121 TSQYSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSF 180
           TSQ   + ST  R   YP  + +A   PG+ + +NGYG H+++ + E+S+R    T DS 
Sbjct: 121 TSQQPKKSSTPSRIPDYPARYSQAPPPPGVSHHFNGYGSHINDIDYEYSRRVFGATWDSI 180

Query: 181 YQTKSRRHDTSYPVYYP 192
            + +SRR+DTS P+ YP
Sbjct: 181 SRPRSRRYDTSDPISYP 195

[Close]

BLAST of CmoCh09G012650 vs. TrEMBL
Match: A0A0B0N3K3_GOSAR (Splicing factor 3B subunit 4 OS=Gossypium arboreum GN=F383_04057 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48
Identity = 109/197 (55.33%), Postives = 142/197 (72.08%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG SS  C++Y+GNLDERVSD+VLYDILIQAGRVVDL+IPRDKE+ KPKGFAF EYE E
Sbjct: 1   MSGNSS--CSVYIGNLDERVSDRVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYETE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPS------SSSNISHKSRSHIVSDYSNE 120
           D+ +YA++LFSGLVTL+NRTLKFA+SGQDK S +       ++N S+KSR +       E
Sbjct: 61  DVADYAVRLFSGLVTLYNRTLKFAISGQDKSSQNPANAVMPATNSSYKSRHYHGVVNHME 120

Query: 121 TSQYSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSF 180
           TSQ   + ST  R   YP  + +A   PG+ + +NGYG H+++ + E+S+R    T DS 
Sbjct: 121 TSQQPKKSSTPSRIPDYPARYSQAPPPPGVSHHFNGYGSHINDIDYEYSRRVFGATWDSI 180

Query: 181 YQTKSRRHDTSYPVYYP 192
            + +SRR+DTS P+ YP
Sbjct: 181 SRPRSRRYDTSDPISYP 195

[Close]

BLAST of CmoCh09G012650 vs. TAIR10
Match: AT4G10110.1 (AT4G10110.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 90/186 (48.39%), Postives = 126/186 (67.74%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG S+  CT+Y+GN+DERVSD+VLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE E
Sbjct: 1   MSGTSN--CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I +YA+KLFSGLV+L+NRTLKFA+SGQDK   S+S+N  H++R   ++   ++ + Y +
Sbjct: 61  EIADYAVKLFSGLVSLYNRTLKFAISGQDK-LQSNSANSGHRARPQSLAFEHSDRAAYHH 120

Query: 121 RLSTSCRF----SAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQ 180
               S +     S  P ++ +    PG+ N            + E+S+R   + LDS   
Sbjct: 121 LERFSSQLISPPSPLPLDYTQEPPPPGVSN----------GASLEYSRRVLGSALDSINH 173

Query: 181 TKSRRH 183
           ++ RR+
Sbjct: 181 SRPRRY 173

[Close]

BLAST of CmoCh09G012650 vs. TAIR10
Match: AT2G18510.1 (AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-13
Identity = 31/98 (31.63%), Postives = 64/98 (65.31%), Query Frame = 1


Query: 2   SGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENED 61
           S   +   T+YVG LD ++S+++L+++ +QAG VV++++P+D+ +   + + F EY +E+
Sbjct: 18  SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77

Query: 62  ITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNI 100
             +YAIK+ + ++ LH + ++   + QDK S    +N+
Sbjct: 78  DADYAIKVLN-MIKLHGKPIRVNKASQDKKSLDVGANL 114

[Close]

BLAST of CmoCh09G012650 vs. TAIR10
Match: AT1G71800.1 (AT1G71800.1 cleavage stimulating factor 64)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-07
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1


Query: 1  MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
          M+  SS R  ++VGN+    +++ L +I  + G VV   +  D+E+GKPKG+ F EY++E
Sbjct: 1  MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of CmoCh09G012650 vs. TAIR10
Match: AT3G47120.1 (AT3G47120.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-07
Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 1


Query: 7   NRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYA 66
           N   +YVG +   +++  L  +  Q G +VD+++ RDK +GK KGFAF  YE++  T  A
Sbjct: 34  NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 67  IKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSR 105
           +   +G + L  RT+K    G  K           ++R
Sbjct: 94  VDNLNGALVL-GRTIKVDHCGAYKKHEEEDEETRRQNR 130

[Close]

BLAST of CmoCh09G012650 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-07
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 1


Query: 5   SSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITN 64
           S NR  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y++     
Sbjct: 202 SGNR--VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 261

Query: 65  YAIKLFSG 73
            AIK   G
Sbjct: 262 NAIKSLDG 267

[Close]

BLAST of CmoCh09G012650 vs. NCBI nr
Match: gi|659119260|ref|XP_008459559.1| (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 1.0e-78
Identity = 154/193 (79.79%), Postives = 169/193 (87.56%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSGRS   CT+YVGNLDERVSD+VLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRSKG-CTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLFSGLV LH RTLKFAVSGQDKPSP S++ I+  SRS IVS YSNE SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNA-ITSSSRSQIVSGYSNEISQYSN 120

Query: 121 RLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSR 180
           R S+SCRF  YPENH EALL+PGLVNQ+NGYG HLDNYN E+SQRYS T LDSF Q KSR
Sbjct: 121 RFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSR 180

Query: 181 RHDTSYPVYYPPH 194
           RHD+S+PV YPP+
Sbjct: 181 RHDSSFPVDYPPY 191

[Close]

BLAST of CmoCh09G012650 vs. NCBI nr
Match: gi|778707852|ref|XP_011656074.1| (PREDICTED: RNA-binding protein 7-like [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.5e-74
Identity = 148/193 (76.68%), Postives = 164/193 (84.97%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSGRS N CT+Y+GNLDE+VSD+VLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRS-NGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLFSGLV LH RTLKFAVSGQDKPSP S++ I+  SRSH       E SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNA-ITSSSRSH-------EISQYSN 120

Query: 121 RLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSR 180
           R S SCRF  YPENH EALL+PGLVNQ+NGYG HLDNYN E+SQRYS T LDSF Q KSR
Sbjct: 121 RFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSR 180

Query: 181 RHDTSYPVYYPPH 194
           RHD+S+PV YPP+
Sbjct: 181 RHDSSFPVDYPPY 184

[Close]

BLAST of CmoCh09G012650 vs. NCBI nr
Match: gi|659119268|ref|XP_008459563.1| (PREDICTED: splicing regulator RBM11-like isoform X1 [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 150/201 (74.63%), Postives = 167/201 (83.08%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG  SN CT+YVGNLDERVSD+VLYDILIQAGRVVDLHIPRDK+SG PKGFAFA YE+E
Sbjct: 1   MSG-GSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSP-----SSSSNISHKSRSHIVSDYSNET 120
           +I NYA+KLFSGLV+LH+R LKFAVSGQDK SP     +SSSN+SHKSRSH    YSNE 
Sbjct: 61  EIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSH---GYSNEI 120

Query: 121 SQYSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFY 180
           SQYSN  STSCR   YPENH +ALL+ GLVNQYNGY  H+DNYN E+SQRY  TTLDSF 
Sbjct: 121 SQYSNHPSTSCR--TYPENHVQALLYLGLVNQYNGYASHMDNYNKEYSQRYGGTTLDSFK 180

Query: 181 QTKSRRHDTSYPVYYPPHELL 197
           Q KSRR+ TSYPVYYP ++LL
Sbjct: 181 QPKSRRNVTSYPVYYPSYDLL 195

[Close]

BLAST of CmoCh09G012650 vs. NCBI nr
Match: gi|700197469|gb|KGN52646.1| (hypothetical protein Csa_5G648670 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 3.1e-72
Identity = 144/188 (76.60%), Postives = 160/188 (85.11%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSGRS N CT+Y+GNLDE+VSD+VLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYE+E
Sbjct: 1   MSGRS-NGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSPSSSSNISHKSRSHIVSDYSNETSQYSN 120
           +I NYA+KLFSGLV LH RTLKFAVSGQDKPSP S++ I+  SRSH       E SQYSN
Sbjct: 61  EIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNA-ITSSSRSH-------EISQYSN 120

Query: 121 RLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSR 180
           R S SCRF  YPENH EALL+PGLVNQ+NGYG HLDNYN E+SQRYS T LDSF Q KSR
Sbjct: 121 RFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSR 179

Query: 181 RHDTSYPV 189
           RHD+S+P+
Sbjct: 181 RHDSSFPM 179

[Close]

BLAST of CmoCh09G012650 vs. NCBI nr
Match: gi|778707844|ref|XP_011656072.1| (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 2.0e-71
Identity = 148/195 (75.90%), Postives = 164/195 (84.10%), Query Frame = 1


Query: 1   MSGRSSNRCTLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENE 60
           MSG  SN CT+YVGNLDERVSD+VLYDILIQAGRVVDLHIPRDK++GKPKGFAFA YE+E
Sbjct: 1   MSG-GSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDTGKPKGFAFAVYESE 60

Query: 61  DITNYAIKLFSGLVTLHNRTLKFAVSGQDKPSP-----SSSSNISHKSRSHIVSDYSNET 120
           +I NYA+KLFSGLV+LH+R LKFAVSGQDK SP     +SSSN+SHKSRSH    YSNE 
Sbjct: 61  EIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVSHKSRSH---GYSNEI 120

Query: 121 SQYSNRLSTSCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFY 180
           SQYSN LSTSCR   YPENH +ALL+ GLVNQYNGYG HLDNYN E+SQRY  TTLDSF 
Sbjct: 121 SQYSNHLSTSCR--TYPENHVQALLYHGLVNQYNGYGSHLDNYNKEYSQRYHATTLDSFK 180

Query: 181 QTKSRRHDTSYPVYY 191
           Q KSR + T+YPVYY
Sbjct: 181 QPKSRCYVTNYPVYY 189

The following BLAST results are available for this feature:

BLAST of CmoCh09G012650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP49_SCHPO	2.4e-11	38.27	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
SF3B4_RAT	3.1e-11	38.36	Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1	[more]
SF3B4_HUMAN	3.1e-11	38.36	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	[more]
SF3B4_MOUSE	3.1e-11	38.36	Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1	[more]
SF3B4_CAEEL	5.3e-11	33.33	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2	[more]

BLAST of CmoCh09G012650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV1_CUCSA	2.2e-72	76.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648670 PE=4 SV=1	[more]
W9SHM1_9ROSA	5.8e-49	58.88	Splicing factor 3B subunit 4 OS=Morus notabilis GN=L484_012633 PE=4 SV=1	[more]
D7SN08_VITVI	2.2e-48	55.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00220 PE=4 SV=...	[more]
A0A0D2V1V5_GOSRA	2.2e-48	55.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046700 PE=4 SV=1	[more]
A0A0B0N3K3_GOSAR	2.2e-48	55.33	Splicing factor 3B subunit 4 OS=Gossypium arboreum GN=F383_04057 PE=4 SV=1	[more]

BLAST of CmoCh09G012650 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10110.1	1.2e-37	48.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	6.0e-13	31.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G71800.1	2.9e-07	37.70	cleavage stimulating factor 64	[more]
AT3G47120.1	6.4e-07	31.63	RNA recognition motif (RRM)-containing protein	[more]
AT2G37220.1	8.4e-07	38.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh09G012650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119260\|ref\|XP_008459559.1\|	1.0e-78	79.79	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo]	[more]
gi\|778707852\|ref\|XP_011656074.1\|	1.5e-74	76.68	PREDICTED: RNA-binding protein 7-like [Cucumis sativus]	[more]
gi\|659119268\|ref\|XP_008459563.1\|	2.4e-72	74.63	PREDICTED: splicing regulator RBM11-like isoform X1 [Cucumis melo]	[more]
gi\|700197469\|gb\|KGN52646.1\|	3.1e-72	76.60	hypothetical protein Csa_5G648670 [Cucumis sativus]	[more]
gi\|778707844\|ref\|XP_011656072.1\|	2.0e-71	75.90	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G012650.1	CmoCh09G012650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..82 score: 2.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 10..84 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 9..88 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..87 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 5..87 score: 6.38
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..82 score: 6.6
None	No IPR available	PANTHER	PTHR13798:SF2	PROTEIN M01D7.9-RELATED	coord: 1..82 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G012650	Cucsa.237370	Cucumber (Gy14) v1	cgycmoB0658
CmoCh09G012650	CmaCh09G013000	Cucurbita maxima (Rimu)	cmacmoB028
CmoCh09G012650	CmaCh01G008680	Cucurbita maxima (Rimu)	cmacmoB438
CmoCh09G012650	Cla012440	Watermelon (97103) v1	cmowmB011
CmoCh09G012650	Csa5G648670	Cucumber (Chinese Long) v2	cmocuB020
CmoCh09G012650	MELO3C022159	Melon (DHL92) v3.5.1	cmomeB000
CmoCh09G012650	ClCG08G001170	Watermelon (Charleston Gray)	cmowcgB027
CmoCh09G012650	CSPI05G30740	Wild cucumber (PI 183967)	cmocpiB020
CmoCh09G012650	Lsi08G001040	Bottle gourd (USVL1VR-Ls)	cmolsiB025
CmoCh09G012650	Cp4.1LG02g10920	Cucurbita pepo (Zucchini)	cmocpeB025
CmoCh09G012650	Cp4.1LG06g09810	Cucurbita pepo (Zucchini)	cmocpeB035
CmoCh09G012650	MELO3C033524.2	Melon (DHL92) v3.6.1	cmomedB000
CmoCh09G012650	CsaV3_5G039770	Cucumber (Chinese Long) v3	cmocucB0024
CmoCh09G012650	Cla97C08G145510	Watermelon (97103) v2	cmowmbB028
CmoCh09G012650	Bhi06G000179	Wax gourd	cmowgoB0001
CmoCh09G012650	CsGy5G030090	Cucumber (Gy14) v2	cgybcmoB551
CmoCh09G012650	Carg24120	Silver-seed gourd	carcmoB0929

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh09G012650	CmoCh01G009110	Cucurbita moschata (Rifu)	cmocmoB021

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G012650	Silver-seed gourd	carcmoB0229
CmoCh09G012650	Cucurbita maxima (Rimu)	cmacmoB029