MELO3C021769 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021769
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease H2 subunit C
Locationchr12 : 16975486 .. 16978890 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGGATAAAATGGTAAAGAAGAAGAAGAAAAAAAAAAAAACCAATTTGGAGCGGGAAAGTGTTGGTCGACGATCGATTCTCATTTCTCAGTGTTCAAAAGAGCGGGAAACATAGAATCTGAATGACAATACAAACGGTCGATTGAATTTCCTTCTCAGAAATCCCAAGCACCAACGTCGGTTTGTTTAGGGTTTTTCACTTTTAGATTTGCTTTACAATCAATCAAATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCCGTTTCTTCTACTCCACTTTATATATTTAGCGTACTTTTTTTGTTCTTTACTCAGTAGTTTCTTGCCTATTATAGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGTAATATGAAATTACTTTCAGCTTTCACTTCATTGAAAATTCTATCTTCTTTGTTGATATTACTCACTTGTATTTTGTATCGTTCATTACTTCAATCACTTAATCACCTATCTATTGCTTACATAAATTATTGGTTTCAGTTTTCTATATTCTTTGGCATGATATTACTTTATAATATTAAAAAGAGTTTTCTACCTTAATTTCTTACAAAATGGAAACAATAAGAAACAAAGAAGATGTTATTGTTAACTGATTAAATCATGAACTTGAAGTTTCCATATTAGTTGAGTTTCTGTCTTTTAAAGATATATTTTGGGCTAGCTATGAACATTTCTATTATTGAAAAGTGTTATTACTGTGATAATTGGTTTTTCTAGTTTTGTTGGATGTCTTAGTTGGAAATTGGGATTGAATATTTTTATCTTAAAATAGAATGTTTCTGCTCTCTATGTAGAACGGTGATTACATATTCATAGGGTCACAGGGTTTTGTCTTTTCTTAAACAAGGCTTTTCCATCAAACCAATAGAGTAGAGCTCATCAAAAGCTTGCTGACAGTTTAGTTTTTGATATGAAATTTATTCCAATTCCAGGCATAACCAAAATTTACTTAAAATTGTGTATTTTTTCATTTATCTGTTTTATTTCATGTGTTGTTGTCTAAAAGAAAAGTAGTTTCAAAACCCACTTCAATTGGCTAAGGCGATTCTTGTAAGTATTCAAATAAGTAGAGATTGAATATTATGGTACTGGTTGTTCTTGTTCTCTGTCTATCTGCAACTGTTTCTCATGTGGGTTGAATGGGATTCACTGAGACAATTGGTGAAGAGCTTTCCTACAATTCTTAGCCTATTTTATGGTTGATGTTCTTATTTCACTTGTAATATGCCTGGATATTTTGAAAGAATTTCAACATGCATTCTGAATATGTTTTGTGAATAAAAAACGCTAGGGTGGTACACTGGTTGAAGATAAACAGAGTATTTCAACTGTAAATAGTCTATGAATAAGAAATCTTTATTTGTTTCTTGTTCTTTATTACTAATATCATTATTTAAATTTTTTTTTTACTGCTCCATGTCTACTTTCTGCTTATGGGATTGTCAACAGCGTAGGGCCTAGTCATTTCATGAGTACATGCACAATAGCTCCTTTCCGGGTTTTTTTTTGTATAATGGTTACTTGCATAAACTTCAGTTGGTGATCTCTTTAACTAAAGATCGACACATACATGCCACATGGGCAAGTTCCCTGCTCCCATTCTTGGTTTATATTTATGAAAAATTTGAAGAAGAATGCATGCAAATAAGTTACTTGAACCTTCTTGTTTACTGTAAATAAGATATGTTTGTTTTCTTGTTGGGAGATTAAAGATTTGCTATGAAAAAAACCATCGGTTATTTTGATGATTCTAGAAAAAGGAAATGAGAAGGAATAAGCTATTCATTTTCCTGTTTCGTTTAGTTTTTAGGCTGCTATATAAGAGCAGTTTTCTAACTATCCCTTTTTGTTTTGTAAATCTAGCCAATCGGAAAGTGTATATATATATATATATATTAAGGGCCTTGTTTGAATGGACATGAGGATATCAGATCTCCAATCCTTCTTAGAGTAAATGTAAATGCTTTCTGTTAAAAAAAATGCTCTGTTTCCACCTTTTCTATCTAATTTGAACTTTTGCACTAAGGCATCCAGAACTAATATTGACATAAATTTGTTCCACACTTCATTTAACCAATTTGAACTAAAGGATCTATGTTTTTCTGTAAATGTTGTTCTTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCAGTATGATTCTGATCAACACACATCAAAATAATTAACAATATCATGTCTTGTTTGCATTTTTCTATATCCAAGTACTAAAACTGCTATGAGGTTTGAGAATAGTTTCATACAAGCTTTAAATTAACTACTACGAGATGGAAAAAGTGGAGGGTTTCTTTTAATTAAATATATTAGGTTTGTTATGTAACTCCAGAGTTTGTGCATCCTCCTCTCCAATTTTGGCCTAATATGAAATAAGATTTATATT

mRNA sequence

AAAGGATAAAATGGTAAAGAAGAAGAAGAAAAAAAAAAAAACCAATTTGGAGCGGGAAAGTGTTGGTCGACGATCGATTCTCATTTCTCAGTGTTCAAAAGAGCGGGAAACATAGAATCTGAATGACAATACAAACGGTCGATTGAATTTCCTTCTCAGAAATCCCAAGCACCAACGTCGGTTTGTTTAGGGTTTTTCACTTTTAGATTTGCTTTACAATCAATCAAATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCAGTATGATTCTGATCAACACACATCAAAATAATTAACAATATCATGTCTTGTTTGCATTTTTCTATATCCAAGTACTAAAACTGCTATGAGGTTTGAGAATAGTTTCATACAAGCTTTAAATTAACTACTACGAGATGGAAAAAGTGGAGGGTTTCTTTTAATTAAATATATTAGGTTTGTTATGTAACTCCAGAGTTTGTGCATCCTCCTCTCCAATTTTGGCCTAATATGAAATAAGATTTATATT

Coding sequence (CDS)

ATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCAGTATGA

Protein sequence

MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQAV*
Homology
[Close]
BLAST of MELO3C021769 vs. Swiss-Prot
Match: RNH2C_HUMAN (Ribonuclease H2 subunit C OS=Homo sapiens GN=RNASEH2C PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 44/139 (31.65%), Postives = 61/139 (43.88%), Query Frame = 1 

Query: 32  IHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL 91
           +H LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+
Sbjct: 29  LHLLPCEVAVDGPAPVGRFFTPAIR----QGPEGLEVSFRGRCLRGEEVAVPPGLVGYVM 88

Query: 92  ----GKKSLGK------SKSSDQCDDSSPWQ--------VKAKFDNITYWNHDTLPSQDD 151
                K S+GK      S + DQ  +  P +          A F   T W  +T+P  D 
Sbjct: 89  VTEEKKVSMGKPDPLRDSGTDDQ--EEEPLERDFDRFIGATANFSRFTLWGLETIPGPDA 148

Query: 152 TFQRTFHWLTVAQALHKPV 153
             +    W ++A A+H  V
Sbjct: 149 KVRGALTWPSLAAAIHAQV 161

[Close]
BLAST of MELO3C021769 vs. Swiss-Prot
Match: YDEF_SCHPO (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-09
Identity = 39/118 (33.05%), Postives = 56/118 (47.46%), Query Frame = 1 

Query: 31  KIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-Y 90
           K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDKIQ-ISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 91  VLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTL-PSQDDTFQR-TFHWLTVA 146
           VL    L   ++S++    S W + + F+ +  WN D +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

[Close]
BLAST of MELO3C021769 vs. Swiss-Prot
Match: RNH2C_BOVIN (Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 39/138 (28.26%), Postives = 61/138 (44.20%), Query Frame = 1 

Query: 32  IHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL 91
           +H LPC +  + P PV  +F P +  +  DGL   EA FRGR L+G  + +P G+ GYV+
Sbjct: 29  LHLLPCEVPVNRPTPVGRFFTP-AIRMGRDGL---EASFRGRSLRGEEVVVPPGFVGYVV 88

Query: 92  GKKS----LGKSKSSD-------------QCDDSSPWQVKAKFDNITYWNHDTLPSQDDT 151
            ++     +GK    +             + D        A F + T W  +++P  D  
Sbjct: 89  TEEKAEVLMGKQDDHERQEQELLEPPEALERDCDRFMGATASFSSFTVWGLESIPGPDAK 148

Query: 152 FQRTFHWLTVAQALHKPV 153
            +    W ++A A+H  V
Sbjct: 149 LRGALSWPSLAAAIHAQV 162

[Close]
BLAST of MELO3C021769 vs. TrEMBL
Match: A0A0A0M1A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-84
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSKASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

[Close]
BLAST of MELO3C021769 vs. TrEMBL
Match: A0A067GCJ0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 4   QNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGL 63
           + GR    +++           ++LSG++HQLPC IK+DGPC VS YF+ K TGIE DGL
Sbjct: 2   EEGRGSTGSINLIRSSEGKDSVVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGL 61

Query: 64  NVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITY 123
            VEEA+FRGRKL GATI LP+GYSG+VLGKK+LGK K SD  + +S+ W+ KA+FD +TY
Sbjct: 62  KVEEAHFRGRKLHGATIPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTY 121

Query: 124 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAAL 165
           WNHDT PS+DD F R+FHW +VA+ALHKPVTAEDLASA+  L
Sbjct: 122 WNHDTYPSKDDAFIRSFHWFSVAKALHKPVTAEDLASAAVIL 163

[Close]
BLAST of MELO3C021769 vs. TrEMBL
Match: V4TN91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 4   QNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGL 63
           + GR    +++           ++LSG++HQLPC IK+DGPC VS YF+ K TGIE DGL
Sbjct: 2   EEGRGSTGSINLIRSSEGKDSVVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGL 61

Query: 64  NVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITY 123
            VEEA+FRGRKL GATI LP+GYSG+VLGKK+LGK K SD  + +S+ W+ KA+FD +TY
Sbjct: 62  KVEEAHFRGRKLHGATIPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTY 121

Query: 124 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAAL 165
           WNHDT PS+DD F R+FHW +VA+ALHKPVTAEDLASA+  L
Sbjct: 122 WNHDTYPSKDDAFIRSFHWFSVAKALHKPVTAEDLASAAVIL 163

[Close]
BLAST of MELO3C021769 vs. TrEMBL
Match: A9P9L9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s12070g PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-51
Identity = 95/145 (65.52%), Postives = 121/145 (83.45%), Query Frame = 1 

Query: 21  SDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATI 80
           S+ +  +L+GK+H LPC IK+DGP  VSHYFKPK TG+EV+ + VEEA+FRGRKLQGAT+
Sbjct: 20  SETEVPNLTGKVHLLPCCIKYDGPSAVSHYFKPKPTGVEVEEMKVEEAHFRGRKLQGATL 79

Query: 81  SLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTF 140
           ++P GYSG+V+GKKSLGK KSSD  + +S+ W++ AKF+NITYWNHD+LPS+ D F R+ 
Sbjct: 80  AIPNGYSGFVIGKKSLGKRKSSDMSEQNSNTWEITAKFENITYWNHDSLPSKVDAFVRSL 139

Query: 141 HWLTVAQALHKPVTAEDLASASAAL 165
           HWL+VA+ALHKP  AEDLASAS AL
Sbjct: 140 HWLSVAEALHKPAAAEDLASASIAL 164

[Close]
BLAST of MELO3C021769 vs. TrEMBL
Match: W9S3G1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018466 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 96/149 (64.43%), Postives = 119/149 (79.87%), Query Frame = 1 

Query: 20  GSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGAT 79
           G +P+ +DLSGKIH LPC+IKFDGPC VSHYF+PK T +EV+GL V+EA+FRGRKLQG T
Sbjct: 14  GGEPEVVDLSGKIHLLPCSIKFDGPCSVSHYFRPKPTEMEVEGLRVDEAHFRGRKLQGTT 73

Query: 80  ISLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITYWNHDTLPSQDDTFQRT 139
           ISLPE YSG VLGKK LGK K+S+  + + + W++ AKF NITYW HD+LPSQ D F R+
Sbjct: 74  ISLPEAYSGLVLGKKGLGKRKASNMSEGNKNCWEMNAKFRNITYWKHDSLPSQHDPFLRS 133

Query: 140 FHWLTVAQALHKPVTAEDLASASAALNNL 168
           FHW  VA+A+H+PV AE+L SAS AL  +
Sbjct: 134 FHWFAVAKAMHQPVEAEELVSASIALEKM 162

[Close]
BLAST of MELO3C021769 vs. TAIR10
Match: AT2G39440.1 (AT2G39440.1 Ribonuclease H2, subunit C (InterPro:IPR013924))

HSP 1 Score: 197.2 bits (500), Expect = 8.1e-51
Identity = 92/151 (60.93%), Postives = 116/151 (76.82%), Query Frame = 1 

Query: 16  DFDFGSDPKA-LDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRK 75
           DF   +D  + +DLS ++HQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRK
Sbjct: 5   DFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRK 64

Query: 76  LQGATISLPEGYSGYVLGKKS----LGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPS 135
           LQGATISLP GYSG+VL + S     GK K+S   +D+  W+VKAKF+N+TYWNHD+LPS
Sbjct: 65  LQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPS 124

Query: 136 QDDTFQRTFHWLTVAQALHKPVTAEDLASAS 162
           +DDTF R+FHW ++A+ALHKPV  EDL + S
Sbjct: 125 KDDTFFRSFHWFSIAEALHKPVKVEDLVAVS 155

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: gi|659118312|ref|XP_008459055.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 7.3e-94
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: gi|778664624|ref|XP_011660323.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 4.0e-84
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSKASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: gi|567912829|ref|XP_006448728.1| (hypothetical protein CICLE_v10016972mg [Citrus clementina])

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-51
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 4   QNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGL 63
           + GR    +++           ++LSG++HQLPC IK+DGPC VS YF+ K TGIE DGL
Sbjct: 2   EEGRGSTGSINLIRSSEGKDSVVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGL 61

Query: 64  NVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITY 123
            VEEA+FRGRKL GATI LP+GYSG+VLGKK+LGK K SD  + +S+ W+ KA+FD +TY
Sbjct: 62  KVEEAHFRGRKLHGATIPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTY 121

Query: 124 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAAL 165
           WNHDT PS+DD F R+FHW +VA+ALHKPVTAEDLASA+  L
Sbjct: 122 WNHDTYPSKDDAFIRSFHWFSVAKALHKPVTAEDLASAAVIL 163

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: gi|694326040|ref|XP_009353944.1| (PREDICTED: ribonuclease H2 subunit C-like isoform X4 [Pyrus x bretschneideri])

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-51
Identity = 96/150 (64.00%), Postives = 122/150 (81.33%), Query Frame = 1 

Query: 20  GSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGAT 79
           G + + +DLSG++H LPC+IKF+GP  VS YFKPKSTGIE +GL  +EAYFRGRKLQGA+
Sbjct: 21  GEEERVVDLSGQVHLLPCSIKFNGPSSVSQYFKPKSTGIESEGLRTQEAYFRGRKLQGAS 80

Query: 80  ISLPEGYSGYVLGKKSLGKSKSSDQCDDSSP-WQVKAKFDNITYWNHDTLPSQDDTFQRT 139
           I +P+GYSG+VLGKKSLGK K+SD  D SS  W++ AK+ +I+YWNHD+LPSQDD F R 
Sbjct: 81  IPIPDGYSGFVLGKKSLGKRKASDSSDGSSNCWEMNAKYKSISYWNHDSLPSQDDAFLRC 140

Query: 140 FHWLTVAQALHKPVTAEDLASASAALNNLS 169
           FHWL+VA+++HKP T  DL SASAAL  ++
Sbjct: 141 FHWLSVAKSMHKPATPGDLVSASAALEKMN 170

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: gi|568828240|ref|XP_006468452.1| (PREDICTED: uncharacterized protein C12B10.15c [Citrus sinensis])

HSP 1 Score: 208.4 bits (529), Expect = 9.9e-51
Identity = 97/162 (59.88%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 4   QNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGL 63
           + GR    +++           ++LSG++HQLPC IK+DGPC VS YF+ K TGIE DGL
Sbjct: 2   EEGRGSTGSINLIRSSEGKDSVVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGL 61

Query: 64  NVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCD-DSSPWQVKAKFDNITY 123
            VEEA+FRGRKL GATI LP+GYSG+VLGKK+LGK K SD  + +S+ W+ +A+FD +TY
Sbjct: 62  KVEEAHFRGRKLHGATIPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETRARFDKLTY 121

Query: 124 WNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAAL 165
           WNHDT PS+DD F R+FHW +VA+ALHKPVTAEDLASA+  L
Sbjct: 122 WNHDTYPSKDDAFIRSFHWFSVAKALHKPVTAEDLASAAVIL 163

The following BLAST results are available for this feature:
BLAST of MELO3C021769 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNH2C_HUMAN1.1e-0931.65Ribonuclease H2 subunit C OS=Homo sapiens GN=RNASEH2C PE=1 SV=1[more]
YDEF_SCHPO3.2e-0933.05Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT... [more]
RNH2C_BOVIN2.1e-0828.26Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1[more]
BLAST of MELO3C021769 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M1A2_CUCSA2.8e-8490.48Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1[more]
A0A067GCJ0_CITSI3.1e-5160.49Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1[more]
V4TN91_9ROSI3.1e-5160.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1[more]
A9P9L9_POPTR9.1e-5165.52Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s12070g PE=2 SV=1[more]
W9S3G1_9ROSA1.2e-5064.43Uncharacterized protein OS=Morus notabilis GN=L484_018466 PE=4 SV=1[more]
BLAST of MELO3C021769 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39440.18.1e-5160.93 Ribonuclease H2, subunit C (InterPro:IPR013924)[more]
BLAST of MELO3C021769 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118312|ref|XP_008459055.1|7.3e-94100.00PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo][more]
gi|778664624|ref|XP_011660323.1|4.0e-8490.48PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus][more]
gi|567912829|ref|XP_006448728.1|4.5e-5160.49hypothetical protein CICLE_v10016972mg [Citrus clementina][more]
gi|694326040|ref|XP_009353944.1|4.5e-5164.00PREDICTED: ribonuclease H2 subunit C-like isoform X4 [Pyrus x bretschneideri][more]
gi|568828240|ref|XP_006468452.1|9.9e-5159.88PREDICTED: uncharacterized protein C12B10.15c [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013924RNase_H2_suC
IPR013924RNase_H2_suC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0007267 cell-cell signaling
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0010014 meristem initiation
biological_process GO:0010073 meristem maintenance
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0010050 vegetative phase change
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0008150 biological_process
biological_process GO:0006401 RNA catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0032299 ribonuclease H2 complex
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU63569melon EST collection version 4.0transcribed_cluster
MU64959melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021769T2MELO3C021769T2mRNA
MELO3C021769T1MELO3C021769T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU64959MU64959transcribed_cluster
MU63569MU63569transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013924Ribonuclease H2, subunit CPFAMPF08615RNase_H2_suCcoord: 32..147
score: 7.7
NoneNo IPR availablePANTHERPTHR21726PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATEDcoord: 21..148
score: 1.3
NoneNo IPR availablePANTHERPTHR21726:SF42RIBONUCLEASE H2 SUBUNIT Ccoord: 21..148
score: 1.3