Lsi02G010340 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G010340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribonuclease H2 subunit C
Location	chr02 : 10930130 .. 10933595 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACTCGAGACCAAATGTATATTTTTCATAATAAGTAAATAAATAATAATAATAGAAAAACGAATTTCGAGCGGGAAAATCTTGGTCGAGGATCGATTCTCATTTCTCAATGCTCAAAAGAGCGGGAAGCGTAGAATCTGAAGTAGAAATGGTCGACTGAATTTCCTCGCCAGAAATCCGAAGCATCAACGTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAAATCACAATTAATCAAATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCTGTTTCTTCTACTCCACTTTATATATTTGGGTAATTTGTTTGTAGTTTACTGAGTAGTCTCTTTTTCATTTTCTTTTCTTGCCCATTGAAGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGTAAATTGAAAATACTTTCAGTTTTGAGTTCATTGAATTGGATCTTGTTTGTTGATATTTCCCACTTGTATTGTTCACTACTTCAATATGTTAATCACCTATCTAATATGCTTACATAAATAATTGGTTTCAGTTATCTATATTCTTCGGCGTGATATTACTTTATAACATTAAAAGGAGTTTTCTACCTTAATTTCTTATAAAATGGAAAGAATAAGAAACAACGATGTCATTGTTAATTGAGTAAACTCATTAACTTGAAATCTCCATATTAGTTGACTTTCTATCTTTTAGAGAAATGTTTTGGGCTAGCTATGAACATTTCTATGATTGAAAAGTGTTATTTTTGCGAGCATTGGTTTTTCTAGCTTTGTTGGATGTTTTGGTTGGTTGTGAATATTTTGATCTTAAAATGGAATGTTTCTGCTCCCTATGTGGATCAATGATTACCTATTCACAGGGTCTTGTCTTGTCTTAAGCAAAGACTTTTTCAACAAAACAATAGAGCTCATCAAAAGCCATATATTGAACACAGAAGGCTTTATAACACTTGACAGTATAGTTATTAAAATGAAGTTTATTCCAATTCCAAGCATACTAGAACTGACTTCCTTAAAGTTGTGTATGTTTTCTTTTACCTGTTTTAATTCATGTAGTTGATGTTTAAAATGAAAGTAGTTTCAAGACCCACTTCAATAGGCTATGGTAATTATAAGAATTCAAATAAACAAAGATCGAAAACTATGATACCGGTAGTTATTGTTCTATGTCTTAGCTGTAACTGTTACTCATGTGGGTTGAATGGAATTCACGGACACAATTGGTGAAGAGCTTTCCTATAATTCTTAGGGTATTTTCTGATTGATGTTCTTATTTCACTTTTAATATGCCTGGATATATTTTGAAGGAATTTCAACATGCATTCTGTTTATGTTTTGTGAAGAAAAAGATGCTAGGATGGTACACTGGTTGATGATAAACAGGGTATTTCAACTGGAACAAGTTTATGAATCTATTATAACGAATCTGTATTTGTTTTCTTATTCTAAAGTGGAATTTAGTTGTCAACTTGATTCTCTTTTCACGGTCAACTTTGAGATCTATTTAATTTTTTGGGACCAATTGAGTTTTATTTATTATTATTATTACTTTTTAAATTTGTTTTGCTGCCCCATGTCCTAGTTCTGCTTCTTATGGGATTGTTAACGGTGTAGGCCTAGTTATTTCATGAGTACATGCGCAATAAGACTTTCCTGAGTCTCTTTTTCCATAGCTCCTTCCGCTGTTTTGTTTTTGTTTTTTGTTTTGTTTTGTTTTTTGTTTTACTAATGGTTGCTTTCAGAAACTTCAGTTGGGCAAGTTTTCGCAATAATCTCTTTAACTAAAGATTAACAGAGACATGGGCAAGTTTCCCTGTTCCAATTCCTTGGTTTGCATTCATGAATATTTTGAAGCAGAGATAAAAATGAAAAGAGATAACTTGAACCTTCTCATGTAGTATGAATATGATATATTTATTTTCTTTTTGGGAGATTTGGTATGAAAGAACCATCGGTTATTTGATGATTGTAGAAAAAGGAAATGAGAAGGAACGAGCTATTCATTTTCATGTTTCTTATAGTTATGAGGCTGGTATATAAGAACAGTTTTGTGACTATCCCTTTTTGCTTTTGTAATTCTAGCCAATTGGAAAGTATATATATTAAGGCCCTTTGTTTGAATGGATATGAGGATATCTAATCTCCTATCCTTTTTGAGTTAATGTAAATGCTTTCTGTTAAACAAAAAACATGCTCAGTTTCCACCGTTTCTACCTAATTTGAACATCTGCACTAAGGCAACCAGAGCTAATATTGATATAAATTTCTTCCACAGTTCACTTAACCAATTTGAACTAAAGGATCTATGTCTATCTGTAAATGTTGTTCTTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCAGTATGATTCTGATCGACACACATTAAAATGATTAGCAATTTCATGTCTTGTTTGCATTTTTCTGAATCAAAGTACTAAAACTGCTATGAGGTTTGAGAATAGTTTCATACAAGCTTTAAACTTACAAATAAGAAATGGAAAAAAAGTTATCGTTTCTTATCAAATATATTAGGTTTGTCATGTAACTCAAAGTTTGTGCATGATTCTCACCAATATTGGTCAAATATGACAAAAAAAAAAAAGGATTTATGTTATTTATAACGTTTTTTGTGACTGCTCTTTGAATAATTTACCATTCTTGTATAACTTCTGTCTTCTCTATTCATATATTGTACTTCAGAATTACATTTATTTCCTCAAGTTTCTTAGCTCCTGAAATTTTGTTTATGATTGCAGTTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTAGGATCATGTGCTCTGAGAAGAAAACTTCTAAAACTAGAATGATTCCATACTACTTTGAATTTTTATTATTATCTATTTTACCAATTTATTTAATGGGTTTAGCATTTTAAATCATGATGTGGCTTTTTTTATTTATTACAGTAGTATAAAAGAATGTCCTACAAGATTAGTATTGGAAATATGATTTTCATTTTGTTTGTCATTTAACTTGAGTTGTTCAATAAAACTAATATTTATAAAATACAAGAGCAGGCTTACATTGTAAGCCCTAAGCGTTC

mRNA sequence

AAAAACTCGAGACCAAATGTATATTTTTCATAATAAGTAAATAAATAATAATAATAGAAAAACGAATTTCGAGCGGGAAAATCTTGGTCGAGGATCGATTCTCATTTCTCAATGCTCAAAAGAGCGGGAAGCGTAGAATCTGAAGTAGAAATGGTCGACTGAATTTCCTCGCCAGAAATCCGAAGCATCAACGTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAAATCACAATTAATCAAATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTAGGATCATGTGCTCTGAGAAGAAAACTTCTAAAACTAGAATGATTCCATACTACTTTGAATTTTTATTATTATCTATTTTACCAATTTATTTAATGGGTTTAGCATTTTAAATCATGATGTGGCTTTTTTTATTTATTACAGTAGTATAAAAGAATGTCCTACAAGATTAGTATTGGAAATATGATTTTCATTTTGTTTGTCATTTAACTTGAGTTGTTCAATAAAACTAATATTTATAAAATACAAGAGCAGGCTTACATTGTAAGCCCTAAGCGTTC

Coding sequence (CDS)

ATGAATGCTGAAATCGAGAGGAAAGGGGAAGTAATCGTGGATTTTGATTTTGGGATTGACTCTGTGCCTTTGGATCTCAGTGGTAAAGTCCATCAGCTTCCCTGTGCCATTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAGTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCAACCATTTCCCTTCCTGAGGGTTACTCTGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGGGAAGATTCTGAACAGTGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAATATTACATATTGGAACCATGACACCCTACCATCACAAGACGATACGTTCCAACGTTCTTTTCACTGGCTGACCGTTGCAAAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

Protein sequence

MNAEIERKGEVIVDFDFGIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS

Homology

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BLAST of Lsi02G010340 vs. Swiss-Prot
Match: YDEF_SCHPO (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 42/118 (35.59%), Postives = 57/118 (48.31%), Query Frame = 1


Query: 29  KVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSG-Y 88
           K   LPC I +DGP  V +YF  K   I  +  S      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDKIQ-ISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  VLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTL-PSQDDTFQRS-FHWLTVA 144
           VL    L   E SE+    S W + + FE +  WN D +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

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BLAST of Lsi02G010340 vs. Swiss-Prot
Match: RNH2C_BOVIN (Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1


Query: 30  VHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGYSGYVL 89
           +H LPC +  + P  V ++F P +  +  DGL   EA FRGR L+G  + +P G+ GYV+
Sbjct: 29  LHLLPCEVPVNRPTPVGRFFTP-AIRMGRDGL---EASFRGRSLRGEEVVVPPGFVGYVV 88

Query: 90  GKKS----LGKREDSEQCQDS--SPWQ-----------VKAKFENITYWNHDTLPSQDDT 149
            ++     +GK++D E+ +     P +             A F + T W  +++P  D  
Sbjct: 89  TEEKAEVLMGKQDDHERQEQELLEPPEALERDCDRFMGATASFSSFTVWGLESIPGPDAK 148

Query: 150 FQRSFHWLTVAKALHKPV 151
            + +  W ++A A+H  V
Sbjct: 149 LRGALSWPSLAAAIHAQV 162

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BLAST of Lsi02G010340 vs. TrEMBL
Match: A0A0A0M1A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.0e-75
Identity = 142/168 (84.52%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MNAEIERKGEVIVDFDF--GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEV 60
           MN + ERKGEVIVDFDF  G D   LD+SGKVHQLPC IKFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
           DGL++EEAYFRGRKLQGATISLPEGYSGYVLGKKS    + SEQC DSSPWQVKAKF+NI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 167
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASASTALKN+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of Lsi02G010340 vs. TrEMBL
Match: A0A067GCJ0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.3e-53
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1


Query: 18  GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGAT 77
           G DSV ++LSG+VHQLPC IK+DGPC+VS YF+ K TGIE DGL VEEA+FRGRKL GAT
Sbjct: 19  GKDSV-VNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVLGKKSLGKREDSEQCQ-DSSPWQVKAKFENITYWNHDTLPSQDDTFQRS 137
           I LP+GYSG+VLGKK+LGKR+ S+  + +S+ W+ KA+F+ +TYWNHDT PS+DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAKALHKPVTAEDLASASTALK 164
           FHW +VAKALHKPVTAEDLASA+  LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

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BLAST of Lsi02G010340 vs. TrEMBL
Match: V4TN91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.3e-53
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1


Query: 18  GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGAT 77
           G DSV ++LSG+VHQLPC IK+DGPC+VS YF+ K TGIE DGL VEEA+FRGRKL GAT
Sbjct: 19  GKDSV-VNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVLGKKSLGKREDSEQCQ-DSSPWQVKAKFENITYWNHDTLPSQDDTFQRS 137
           I LP+GYSG+VLGKK+LGKR+ S+  + +S+ W+ KA+F+ +TYWNHDT PS+DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAKALHKPVTAEDLASASTALK 164
           FHW +VAKALHKPVTAEDLASA+  LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

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BLAST of Lsi02G010340 vs. TrEMBL
Match: A0A068URU2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033335001 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-50
Identity = 95/144 (65.97%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 20  DSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATIS 79
           +S+P DL+GKVHQLPC IK+DGP +VSQYFKPK TG+E+DGL VEEAYFRGRKLQG T+ 
Sbjct: 11  ESLP-DLTGKVHQLPCCIKYDGPTAVSQYFKPKPTGVEIDGLRVEEAYFRGRKLQGTTVP 70

Query: 80  LPEGYSGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHW 139
           LP+GYSG+VLGK SLGK+ +  + ++ + W++KAKF+N+T WNHD+LPSQ+D F R+FHW
Sbjct: 71  LPQGYSGFVLGKTSLGKQANIPE-ENPNCWEMKAKFQNVTVWNHDSLPSQNDAFLRAFHW 130

Query: 140 LTVAKALHKPVTAEDLASASTALK 164
             VAK+LH+PVTAEDL S+S + K
Sbjct: 131 FAVAKSLHQPVTAEDLESSSISQK 152

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BLAST of Lsi02G010340 vs. TrEMBL
Match: A9P9L9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s12070g PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-50
Identity = 95/140 (67.86%), Postives = 119/140 (85.00%), Query Frame = 1


Query: 25  DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGY 84
           +L+GKVH LPC IK+DGP +VS YFKPK TG+EV+ + VEEA+FRGRKLQGAT+++P GY
Sbjct: 26  NLTGKVHLLPCCIKYDGPSAVSHYFKPKPTGVEVEEMKVEEAHFRGRKLQGATLAIPNGY 85

Query: 85  SGYVLGKKSLGKREDSEQC-QDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVA 144
           SG+V+GKKSLGKR+ S+   Q+S+ W++ AKFENITYWNHD+LPS+ D F RS HWL+VA
Sbjct: 86  SGFVIGKKSLGKRKSSDMSEQNSNTWEITAKFENITYWNHDSLPSKVDAFVRSLHWLSVA 145

Query: 145 KALHKPVTAEDLASASTALK 164
           +ALHKP  AEDLASAS AL+
Sbjct: 146 EALHKPAAAEDLASASIALE 165

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BLAST of Lsi02G010340 vs. TAIR10
Match: AT2G39440.1 (AT2G39440.1 Ribonuclease H2, subunit C (InterPro:IPR013924))

HSP 1 Score: 197.2 bits (500), Expect = 7.9e-51
Identity = 92/145 (63.45%), Postives = 113/145 (77.93%), Query Frame = 1


Query: 24  LDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEG 83
           +DLS +VHQLPC I+FDGP  VS YFKPKS+ +E+DG+  EEA+FRGRKLQGATISLP G
Sbjct: 16  VDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRKLQGATISLPSG 75

Query: 84  YSGYVLGKKS----LGKREDSEQCQDSSPWQVKAKFENITYWNHDTLPSQDDTFQRSFHW 143
           YSG+VL + S     GKR+ S   +D+  W+VKAKF N+TYWNHD+LPS+DDTF RSFHW
Sbjct: 76  YSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHW 135

Query: 144 LTVAKALHKPVTAEDLASASTALKN 165
            ++A+ALHKPV  EDL + S   KN
Sbjct: 136 FSIAEALHKPVKVEDLVAVSHGGKN 160

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BLAST of Lsi02G010340 vs. NCBI nr
Match: gi|659118312|ref|XP_008459055.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 141/168 (83.93%), Postives = 150/168 (89.29%), Query Frame = 1


Query: 1   MNAEIERKGEVIVDFDFGIDSVP--LDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEV 60
           MNA+  RKGE  VDFDF   S P  LDLSGK+HQLPC IKFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
           DGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK + S+QC DSSPWQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 167
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of Lsi02G010340 vs. NCBI nr
Match: gi|778664624|ref|XP_011660323.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 4.4e-75
Identity = 142/168 (84.52%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MNAEIERKGEVIVDFDF--GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEV 60
           MN + ERKGEVIVDFDF  G D   LD+SGKVHQLPC IKFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKREDSEQCQDSSPWQVKAKFENI 120
           DGL++EEAYFRGRKLQGATISLPEGYSGYVLGKKS    + SEQC DSSPWQVKAKF+NI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRSFHWLTVAKALHKPVTAEDLASASTALKNMS 167
           TYWNHDTLPSQDDTFQR+FHWLTVA+ALHKPVTAEDLASASTALKN+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of Lsi02G010340 vs. NCBI nr
Match: gi|1009126837|ref|XP_015880372.1| (PREDICTED: uncharacterized protein C12B10.15c-like [Ziziphus jujuba])

HSP 1 Score: 216.5 bits (550), Expect = 3.6e-53
Identity = 100/142 (70.42%), Postives = 124/142 (87.32%), Query Frame = 1


Query: 25  DLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGATISLPEGY 84
           DLSG+VH LPCA+K+DGP SVS YFKPKST +EV+GLSV+EA+FRGRKLQGATIS+P+GY
Sbjct: 19  DLSGEVHLLPCAVKYDGPSSVSDYFKPKSTRLEVEGLSVKEAHFRGRKLQGATISIPDGY 78

Query: 85  SGYVLGKKSLGKREDSEQCQDS-SPWQVKAKFENITYWNHDTLPSQDDTFQRSFHWLTVA 144
           SG+V+GKK+LGK++D+   +++ + W++ AKF+NITYWNHD LPSQDD F RSFHWL+VA
Sbjct: 79  SGFVVGKKNLGKQKDANSSEENLNCWEMNAKFKNITYWNHDNLPSQDDAFLRSFHWLSVA 138

Query: 145 KALHKPVTAEDLASASTALKNM 166
           K+LHKPV AEDL SAS AL  M
Sbjct: 139 KSLHKPVAAEDLGSASIALGKM 160

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BLAST of Lsi02G010340 vs. NCBI nr
Match: gi|567912829|ref|XP_006448728.1| (hypothetical protein CICLE_v10016972mg [Citrus clementina])

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-52
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1


Query: 18  GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGAT 77
           G DSV ++LSG+VHQLPC IK+DGPC+VS YF+ K TGIE DGL VEEA+FRGRKL GAT
Sbjct: 19  GKDSV-VNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVLGKKSLGKREDSEQCQ-DSSPWQVKAKFENITYWNHDTLPSQDDTFQRS 137
           I LP+GYSG+VLGKK+LGKR+ S+  + +S+ W+ KA+F+ +TYWNHDT PS+DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAKALHKPVTAEDLASASTALK 164
           FHW +VAKALHKPVTAEDLASA+  LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

[Close]

BLAST of Lsi02G010340 vs. NCBI nr
Match: gi|568828240|ref|XP_006468452.1| (PREDICTED: uncharacterized protein C12B10.15c [Citrus sinensis])

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 101/147 (68.71%), Postives = 124/147 (84.35%), Query Frame = 1


Query: 18  GIDSVPLDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEVDGLSVEEAYFRGRKLQGAT 77
           G DSV ++LSG+VHQLPC IK+DGPC+VS YF+ K TGIE DGL VEEA+FRGRKL GAT
Sbjct: 19  GKDSV-VNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVLGKKSLGKREDSEQCQ-DSSPWQVKAKFENITYWNHDTLPSQDDTFQRS 137
           I LP+GYSG+VLGKK+LGKR+ S+  + +S+ W+ +A+F+ +TYWNHDT PS+DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETRARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAKALHKPVTAEDLASASTALK 164
           FHW +VAKALHKPVTAEDLASA+  LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

The following BLAST results are available for this feature:

BLAST of Lsi02G010340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YDEF_SCHPO	3.8e-10	35.59	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]
RNH2C_BOVIN	1.9e-09	28.99	Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1	[more]

BLAST of Lsi02G010340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1A2_CUCSA	3.0e-75	84.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1	[more]
A0A067GCJ0_CITSI	7.3e-53	69.39	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1	[more]
V4TN91_9ROSI	7.3e-53	69.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1	[more]
A0A068URU2_COFCA	1.5e-50	65.97	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033335001 PE=4 SV=1	[more]
A9P9L9_POPTR	2.0e-50	67.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s12070g PE=2 SV=1	[more]

BLAST of Lsi02G010340 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39440.1	7.9e-51	63.45	Ribonuclease H2, subunit C (InterPro:IPR013924)	[more]

BLAST of Lsi02G010340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118312\|ref\|XP_008459055.1\|	2.3e-76	83.93	PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]	[more]
gi\|778664624\|ref\|XP_011660323.1\|	4.4e-75	84.52	PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus]	[more]
gi\|1009126837\|ref\|XP_015880372.1\|	3.6e-53	70.42	PREDICTED: uncharacterized protein C12B10.15c-like [Ziziphus jujuba]	[more]
gi\|567912829\|ref\|XP_006448728.1\|	1.0e-52	69.39	hypothetical protein CICLE_v10016972mg [Citrus clementina]	[more]
gi\|568828240\|ref\|XP_006468452.1\|	2.3e-52	68.71	PREDICTED: uncharacterized protein C12B10.15c [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013924	RNase_H2_suC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032299	ribonuclease H2 complex
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010340.1	Lsi02G010340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 score: 1.1
None	No IPR available	PANTHER	PTHR21726	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED	coord: 25..166 score: 5.0
None	No IPR available	PANTHER	PTHR21726:SF42	RIBONUCLEASE H2 SUBUNIT C	coord: 25..166 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G010340	Csa1G708160	Cucumber (Chinese Long) v2	culsiB026
Lsi02G010340	CSPI01G34730	Wild cucumber (PI 183967)	cpilsiB026
Lsi02G010340	Cucsa.236530	Cucumber (Gy14) v1	cgylsiB385
Lsi02G010340	CmoCh13G004630	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G010340	Cla001005	Watermelon (97103) v1	lsiwmB206
Lsi02G010340	MELO3C021769	Melon (DHL92) v3.5.1	lsimeB180
Lsi02G010340	ClCG01G009300	Watermelon (Charleston Gray)	lsiwcgB177
Lsi02G010340	MELO3C021769.2	Melon (DHL92) v3.6.1	lsimedB190
Lsi02G010340	Cla97C01G009530	Watermelon (97103) v2	lsiwmbB153
Lsi02G010340	Bhi08G000754	Wax gourd	lsiwgoB255
Lsi02G010340	Cp4.1LG20g06040	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G010340	CsGy1G033210	Cucumber (Gy14) v2	cgyblsiB022
Lsi02G010340	Carg21452	Silver-seed gourd	carlsiB362
Lsi02G010340	CsaV3_1G046580	Cucumber (Chinese Long) v3	cuclsiB026

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G010340	Cucumber (Gy14) v1	cgylsiB386
Lsi02G010340	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G010340	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G010340	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G010340	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G010340	Wild cucumber (PI 183967)	cpilsiB034
Lsi02G010340	Cucumber (Chinese Long) v2	culsiB033
Lsi02G010340	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G010340	Cucumber (Gy14) v2	cgyblsiB030
Lsi02G010340	Cucumber (Chinese Long) v3	cuclsiB034