CmoCh13G004630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribonuclease H2 subunit C
Location	Cmo_Chr13 : 5676979 .. 5680200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGGAAAATCTTGGTCACTAATCGATTCTTAGGGCTCAAAAAAGCGGGAAGAAATGGTCAGTTGAATTTCCTCTCTCGAAATCCGAAGCATCGACGTGGGTTTAAGGTTTTTGAATTTAGGGTTTCTTCACAATTGATCAAATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTAATGCACTACTTTTCGCTGTTTCTCCTTGTCCGTTTCATACTGAATAGTCTCTTTTTCATTCTTCTTTTCTTTCTATTCAAGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGTAACATAAAATGCTTTCAGTTCTGAGTTCATTGAAAAGTGCATATTGTTTGTTGTGTGATCCCAAGTTGGTTGGAGAGAGGAACAGGAATGTGAAATCCTCTCCCTAGTAGATACGTTTTAAAATCGTGAAGCTGATGACAATACGTAATGGCTAAAGTGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCTAGATACTGGGCGCTGTGCCAGCAAAGATGCTAGACCCCCAAGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGAGAAACAAAACATTCCTTATAAGGATGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCGTGAGGCTGACGGTGATACGTAACAAGCTAAAATGGATAATATCTGCTTAGTTGAGTTTCTATTTTTTAGAAACATCATTTTGAGCTAGCTATGAACATTTCTGTGATTCGAAAATGTTGCTGTTGTGAGTACTAGTATTTCTAGCTCTGTTGGATGTTTTTGGTTGTGTTTGAATTTTTTTGATCTTAAAGTGGAATCTTTCTGCTCTCCCTATATTGATCAATGATTAGATATTCACAGGATCTTGTCTTGTCTTAAACAATCGTTTTCCGACAAATCAAGAACTCATCAAAAGCCATATATCAAACACAAATGGCTTGCTGATATTAGATTATCAAATGAAGTTTATTCCAATTTCAAGCATACTCAAAACTGGCTTCCTTGAAATTGTGCATGTTTTCACTCACCTGTTTTAATTCATTTAGTTGATATCTGATATGGAAGTAGTTTCAAGACCCATTTCTATTGGCTATGGTGAATCATTGTTGATTATAAGAATTCAAATAAGCAGAAATTAAACATACTGGTAGTTCTTGTTCTAAGACTTGGCTGCAACTGTTTGTCTCATATGTGGGTTGAATGGGATTCACTAAGACAATTGGTGGAGAGCTTTTCGGTAACAGCCCAAACTCACCATTAGCAGGTATTGTCCTTTTTGGGCTTCCCCTTTCGAGCTTCCCCTCAATGTTTTTAAAGCTCACCTGCTAGGGAGAGGTTTCTACACGGTTATAAAGAATGCTTCTTATTTCTCTCACAATCCACCCCTTTCAGGACCCAGCGTCCTCGCTGGCATTCGTTCCCCTCTCCATTTTGAAAAACTTCATTTGGTATTCTCTTTTAACTAAAGATTAGCTCATACATGGGCAGGTTTCCCTGTTCGCATTCCTTGTTTTGCATTCATGAACATTGTGAAAAAGAGACAACTTGAACCTTCTCATTTAGTATGAATACGATATGTTGTTTTCTTGTTAGGAGATTTGGTATGAAAGAACTATAGATTTTCATGTCTCTTTTAGTTATTAGGCTGCTATATAAGAACCGTTTTGTAACTATCCCTTTTTGTGTTTGTAATTCTAGCCAATTGGAAAGTATCGGGCCTTTTTTTTTTAATGGATACGAGGATATCTGATCTTCTATCCTTTTGAGTTAATGTAAATGTTTTCTGTCGTTAAAAAAAGAAAGATGTTTTGTTTCGTGTGTGTAACAACCCAAATTCACAACTAGCAGATATTGTCCGCTTTGGCGTTGTCAACCTCACGACTTTGACAGCCTCACAGTTTTAAAAACCGTGAGGGAAAATCCAAAAGAAAAAGTTCAAAGAGGACAATATCTGCTAATGGTGGGCTTGAGCCGTTAGAGTGAACTTCTGTACTAAGGCAACCATAGCAAATATTGATATAAATTTCTTCCACAATTCATTTAACCATTTTGAACTAAAGGATCTATATCTATCTGTAAATGTTGTTCTTCAGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCAGTATGATCAACACACACTAAATGATTCATAATTTTTGGCTCTTGATATATACACATGTCCTGTTTGCGTTTTTTCTGAATCCAAGTACTAAACTGCTTTGAGAATTGAGAATAGTTTCATACAAGCTTTGAACTTACAATTTCTATATCAAAAATATATTAGGTTTGTTATTGTAGCAGCTCAAGCTCACCGTTTGCAGATATTGTCCTTTTTGGGCTTTCCTTCGTAGTTTTTAAAACTTATTTGCTAGGTAGAGGTTTTCACACCCTTATAAAGAATGCTTCGTTCCTTTCTCCAACTGATGTGGGATCTTATAGTTATGTGCTCCAACGTTTGTGCATGCTTGTCTGATGCTGGTCTGATTTTTGAAGAATTTAGCATTCTTGTATAACTTGTTTGTCTTCTCTATTCATAAATTTATTTCCTCAAGTTTCTCAACTCCTGGAATTTTGTTTATGGCTGCAGTTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGATCAAGAAGATCATGTGCTCTAACACTAAGGTAGTATGAAATGATTCCGCGCCACTTCTATTTGTATTTGGTCACATTATTATCTATATTACCTATTTATTTAATGGGTTTGGCATGATCATGATCTGGCTGAAACTTGACGATGCTGTTAGAAATATATGATCATTAAAAATTTCAATTATATAGAATAAATAATCCAATTGAGCA

mRNA sequence

GCGGGAAAATCTTGGTCACTAATCGATTCTTAGGGCTCAAAAAAGCGGGAAGAAATGGTCAGTTGAATTTCCTCTCTCGAAATCCGAAGCATCGACGTGGGTTTAAGGTTTTTGAATTTAGGGTTTCTTCACAATTGATCAAATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCATTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGATCAAGAAGATCATGTGCTCTAACACTAAGGTAGTATGAAATGATTCCGCGCCACTTCTATTTGTATTTGGTCACATTATTATCTATATTACCTATTTATTTAATGGGTTTGGCATGATCATGATCTGGCTGAAACTTGACGATGCTGTTAGAAATATATGATCATTAAAAATTTCAATTATATAGAATAAATAATCCAATTGAGCA

Coding sequence (CDS)

ATGGATTCTGAAAAGGAGAGGAAAAGGGAAGTAATCGTGGATTTTGATTTTGGGAGCGATTCTGGAGCTGTCGATCTCAGCGGTAAAGTCCATCAGCTTCCGTGTGCCGTTAAATTCGATGGTCCTTGCTCTGTTTCTCAGTATTTTAAACCTAAATCCACTGGTATTGAGGTTGATGGTTTGAGCGTTGAGAATGCTTATTTCAGAGGAAGAAAGTTGCAGGGAGCTACCATTTCCCTTCCGGAAGGCTACTCTGGCTATGTGATAGGGAGGAAAAGTCATGGAAAGAGAAAAGCTTCCGAAGAGTCTCAGGACTCAAGCTCTTGGCAAGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGACACCCTACCAACACAAGATGATACGTTCCAGCGTTCTTTTCACTGGCTGACGGTTGCACAAGCATTGCACAAACCGGTAACCGCAGAAGACTTGGCAGCAGCATCTATTGCTCTCAAGAACATGAGTTGA

Homology

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BLAST of CmoCh13G004630 vs. Swiss-Prot
Match: YDEF_SCHPO (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-09
Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = 1


Query: 29  KVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYV 88
           K   LPC + +DGP  V +YF  K   I  +  S      RGR+L G  + LPE Y+G V
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 89  I----GRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTL-PTQDDTFQRS-FHWLTV 144
           +    G ++    + SE+    S+W + + FE +  WN D +  ++ D ++R    W+  
Sbjct: 80  VLCDDGLEND---ETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQF 136

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BLAST of CmoCh13G004630 vs. Swiss-Prot
Match: RNH2C_BOVIN (Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 38/138 (27.54%), Postives = 65/138 (47.10%), Query Frame = 1


Query: 30  VHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGYSGYVI 89
           +H LPC V  + P  V ++F P +  +  DGL    A FRGR L+G  + +P G+ GYV+
Sbjct: 29  LHLLPCEVPVNRPTPVGRFFTP-AIRMGRDGLE---ASFRGRSLRGEEVVVPPGFVGYVV 88

Query: 90  ---------GRKSHGKRKASEESQDSSSWQ--------VKAKFENITYWNHDTLPTQDDT 149
                    G++   +R+  E  +   + +          A F + T W  +++P  D  
Sbjct: 89  TEEKAEVLMGKQDDHERQEQELLEPPEALERDCDRFMGATASFSSFTVWGLESIPGPDAK 148

Query: 150 FQRSFHWLTVAQALHKPV 151
            + +  W ++A A+H  V
Sbjct: 149 LRGALSWPSLAAAIHAQV 162

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BLAST of CmoCh13G004630 vs. TrEMBL
Match: A0A0A0M1A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-70
Identity = 133/168 (79.17%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MDSEKERKREVIVDFDF--GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60
           M+ + ERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120
           DGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    KASE+  DSS WQVKAKF+NI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of CmoCh13G004630 vs. TrEMBL
Match: A0A067GCJ0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.8e-51
Identity = 96/147 (65.31%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 18  GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGAT 77
           G DS  V+LSG+VHQLPC +K+DGPC+VS YF+ K TGIE DGL VE A+FRGRKL GAT
Sbjct: 19  GKDS-VVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVIGRKSHGKRKASEESQ-DSSSWQVKAKFENITYWNHDTLPTQDDTFQRS 137
           I LP+GYSG+V+G+K+ GKRK S+ S+ +S+ W+ KA+F+ +TYWNHDT P++DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAQALHKPVTAEDLAAASIALK 164
           FHW +VA+ALHKPVTAEDLA+A++ LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

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BLAST of CmoCh13G004630 vs. TrEMBL
Match: V4TN91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.8e-51
Identity = 96/147 (65.31%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 18  GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGAT 77
           G DS  V+LSG+VHQLPC +K+DGPC+VS YF+ K TGIE DGL VE A+FRGRKL GAT
Sbjct: 19  GKDS-VVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVIGRKSHGKRKASEESQ-DSSSWQVKAKFENITYWNHDTLPTQDDTFQRS 137
           I LP+GYSG+V+G+K+ GKRK S+ S+ +S+ W+ KA+F+ +TYWNHDT P++DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAQALHKPVTAEDLAAASIALK 164
           FHW +VA+ALHKPVTAEDLA+A++ LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

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BLAST of CmoCh13G004630 vs. TrEMBL
Match: A0A061GD95_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029382 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.9e-51
Identity = 94/141 (66.67%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 24  VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEG 83
           V++SG+VH LPC +KF+GPCSVSQYF+PK+ G+E+DGL+VE A+FRGRKLQG TIS+P G
Sbjct: 607 VNISGQVHHLPCCIKFNGPCSVSQYFRPKAKGMEIDGLAVEEAHFRGRKLQGTTISIPNG 666

Query: 84  YSGYVIGRKSHGKRKASEESQDS-SSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTV 143
           YSG+V+G+ + GKRKA   S+ S +SWQ+KAKF+ +TYWNHD+ P++DD F RSFHW  V
Sbjct: 667 YSGFVLGKNNSGKRKACNVSEGSLNSWQMKAKFDKLTYWNHDSPPSKDDAFLRSFHWFAV 726

Query: 144 AQALHKPVTAEDLAAASIALK 164
           A+ALHKPV AEDL AASIAL+
Sbjct: 727 AEALHKPVKAEDLTAASIALE 747

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BLAST of CmoCh13G004630 vs. TrEMBL
Match: A0A061GEF7_THECC (Subunit C, putative OS=Theobroma cacao GN=TCM_029372 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 94/141 (66.67%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 24  VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEG 83
           V +SG+VH LPC +KF+GPCSVSQYF+PK+ G+E+DGL+VE A+FRGRKLQG TIS+P G
Sbjct: 22  VSISGQVHHLPCCIKFNGPCSVSQYFRPKAKGMEIDGLAVEEAHFRGRKLQGTTISIPNG 81

Query: 84  YSGYVIGRKSHGKRKASEESQDS-SSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTV 143
           YSG+V+G+ + GKRKA + S+ S +SWQ+KAKF+ +TYWNHD+ P+ DD F RSFHW  V
Sbjct: 82  YSGFVLGKNNSGKRKACDVSEGSLNSWQMKAKFDKLTYWNHDSPPSTDDAFLRSFHWFAV 141

Query: 144 AQALHKPVTAEDLAAASIALK 164
           A+ALHKPV AEDL AASIAL+
Sbjct: 142 AEALHKPVKAEDLTAASIALE 162

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BLAST of CmoCh13G004630 vs. TAIR10
Match: AT2G39440.1 (AT2G39440.1 Ribonuclease H2, subunit C (InterPro:IPR013924))

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-52
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 1


Query: 13  VDFDFGSDSGA-VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGR 72
           +DF   +D  + VDLS +VHQLPC ++FDGP  VS YFKPKS+ +E+DG+  E A+FRGR
Sbjct: 4   IDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGR 63

Query: 73  KLQGATISLPEGYSGYVIGRKS----HGKRKASEESQDSSSWQVKAKFENITYWNHDTLP 132
           KLQGATISLP GYSG+V+ + S    +GKRKAS  ++D+  W+VKAKF N+TYWNHD+LP
Sbjct: 64  KLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLP 123

Query: 133 TQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKN 165
           ++DDTF RSFHW ++A+ALHKPV  EDL A S   KN
Sbjct: 124 SKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKN 160

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BLAST of CmoCh13G004630 vs. NCBI nr
Match: gi|659118312|ref|XP_008459055.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-70
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 1


Query: 1   MDSEKERKREVIVDFDF--GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60
           M+++  RK E  VDFDF  GSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

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BLAST of CmoCh13G004630 vs. NCBI nr
Match: gi|778664624|ref|XP_011660323.1| (PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-70
Identity = 133/168 (79.17%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MDSEKERKREVIVDFDF--GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60
           M+ + ERK EVIVDFDF  G+D  A+D+SGKVHQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120
           DGL++E AYFRGRKLQGATISLPEGYSGYV+G+KS    KASE+  DSS WQVKAKF+NI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGKKS----KASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 167
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS ALKN+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

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BLAST of CmoCh13G004630 vs. NCBI nr
Match: gi|1009126837|ref|XP_015880372.1| (PREDICTED: uncharacterized protein C12B10.15c-like [Ziziphus jujuba])

HSP 1 Score: 209.5 bits (532), Expect = 4.4e-51
Identity = 97/142 (68.31%), Postives = 123/142 (86.62%), Query Frame = 1


Query: 25  DLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEGY 84
           DLSG+VH LPCAVK+DGP SVS YFKPKST +EV+GLSV+ A+FRGRKLQGATIS+P+GY
Sbjct: 19  DLSGEVHLLPCAVKYDGPSSVSDYFKPKSTRLEVEGLSVKEAHFRGRKLQGATISIPDGY 78

Query: 85  SGYVIGRKSHGKRKASEESQDS-SSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVA 144
           SG+V+G+K+ GK+K +  S+++ + W++ AKF+NITYWNHD LP+QDD F RSFHWL+VA
Sbjct: 79  SGFVVGKKNLGKQKDANSSEENLNCWEMNAKFKNITYWNHDNLPSQDDAFLRSFHWLSVA 138

Query: 145 QALHKPVTAEDLAAASIALKNM 166
           ++LHKPV AEDL +ASIAL  M
Sbjct: 139 KSLHKPVAAEDLGSASIALGKM 160

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: gi|567912829|ref|XP_006448728.1| (hypothetical protein CICLE_v10016972mg [Citrus clementina])

HSP 1 Score: 208.4 bits (529), Expect = 9.8e-51
Identity = 96/147 (65.31%), Postives = 123/147 (83.67%), Query Frame = 1


Query: 18  GSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGAT 77
           G DS  V+LSG+VHQLPC +K+DGPC+VS YF+ K TGIE DGL VE A+FRGRKL GAT
Sbjct: 19  GKDS-VVNLSGQVHQLPCCIKYDGPCAVSDYFRAKPTGIEADGLKVEEAHFRGRKLHGAT 78

Query: 78  ISLPEGYSGYVIGRKSHGKRKASEESQ-DSSSWQVKAKFENITYWNHDTLPTQDDTFQRS 137
           I LP+GYSG+V+G+K+ GKRK S+ S+ +S+ W+ KA+F+ +TYWNHDT P++DD F RS
Sbjct: 79  IPLPDGYSGFVLGKKNLGKRKVSDMSEANSNCWETKARFDKLTYWNHDTYPSKDDAFIRS 138

Query: 138 FHWLTVAQALHKPVTAEDLAAASIALK 164
           FHW +VA+ALHKPVTAEDLA+A++ LK
Sbjct: 139 FHWFSVAKALHKPVTAEDLASAAVILK 164

[Close]

BLAST of CmoCh13G004630 vs. NCBI nr
Match: gi|590621971|ref|XP_007024919.1| (Uncharacterized protein TCM_029382 [Theobroma cacao])

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 94/141 (66.67%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 24  VDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDGLSVENAYFRGRKLQGATISLPEG 83
           V++SG+VH LPC +KF+GPCSVSQYF+PK+ G+E+DGL+VE A+FRGRKLQG TIS+P G
Sbjct: 607 VNISGQVHHLPCCIKFNGPCSVSQYFRPKAKGMEIDGLAVEEAHFRGRKLQGTTISIPNG 666

Query: 84  YSGYVIGRKSHGKRKASEESQDS-SSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTV 143
           YSG+V+G+ + GKRKA   S+ S +SWQ+KAKF+ +TYWNHD+ P++DD F RSFHW  V
Sbjct: 667 YSGFVLGKNNSGKRKACNVSEGSLNSWQMKAKFDKLTYWNHDSPPSKDDAFLRSFHWFAV 726

Query: 144 AQALHKPVTAEDLAAASIALK 164
           A+ALHKPV AEDL AASIAL+
Sbjct: 727 AEALHKPVKAEDLTAASIALE 747

The following BLAST results are available for this feature:

BLAST of CmoCh13G004630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YDEF_SCHPO	9.2e-09	31.40	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]
RNH2C_BOVIN	1.3e-07	27.54	Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1	[more]

BLAST of CmoCh13G004630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1A2_CUCSA	2.3e-70	79.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G708160 PE=4 SV=1	[more]
A0A067GCJ0_CITSI	6.8e-51	65.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030921mg PE=4 SV=1	[more]
V4TN91_9ROSI	6.8e-51	65.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016972mg PE=4 SV=1	[more]
A0A061GD95_THECC	8.9e-51	66.67	Uncharacterized protein OS=Theobroma cacao GN=TCM_029382 PE=4 SV=1	[more]
A0A061GEF7_THECC	1.2e-50	66.67	Subunit C, putative OS=Theobroma cacao GN=TCM_029372 PE=4 SV=1	[more]

BLAST of CmoCh13G004630 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39440.1	1.9e-52	60.51	Ribonuclease H2, subunit C (InterPro:IPR013924)	[more]

BLAST of CmoCh13G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118312\|ref\|XP_008459055.1\|	1.9e-70	77.98	PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo]	[more]
gi\|778664624\|ref\|XP_011660323.1\|	3.2e-70	79.17	PREDICTED: uncharacterized protein C12B10.15c [Cucumis sativus]	[more]
gi\|1009126837\|ref\|XP_015880372.1\|	4.4e-51	68.31	PREDICTED: uncharacterized protein C12B10.15c-like [Ziziphus jujuba]	[more]
gi\|567912829\|ref\|XP_006448728.1\|	9.8e-51	65.31	hypothetical protein CICLE_v10016972mg [Citrus clementina]	[more]
gi\|590621971\|ref\|XP_007024919.1\|	1.3e-50	66.67	Uncharacterized protein TCM_029382 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013924	RNase_H2_suC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0010014	meristem initiation
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032299	ribonuclease H2 complex
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004630.1	CmoCh13G004630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..146 score: 4.7
None	No IPR available	PANTHER	PTHR21726	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED	coord: 19..166 score: 4.0
None	No IPR available	PANTHER	PTHR21726:SF42	RIBONUCLEASE H2 SUBUNIT C	coord: 19..166 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004630	Cucsa.236530	Cucumber (Gy14) v1	cgycmoB0655
CmoCh13G004630	CmaCh13G004300	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004630	Cla001005	Watermelon (97103) v1	cmowmB182
CmoCh13G004630	Csa1G708160	Cucumber (Chinese Long) v2	cmocuB208
CmoCh13G004630	MELO3C021769	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G004630	ClCG01G009300	Watermelon (Charleston Gray)	cmowcgB174
CmoCh13G004630	CSPI01G34730	Wild cucumber (PI 183967)	cmocpiB210
CmoCh13G004630	Lsi02G010340	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004630	Cp4.1LG20g06040	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004630	MELO3C021769.2	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G004630	CsaV3_1G046580	Cucumber (Chinese Long) v3	cmocucB0240
CmoCh13G004630	Cla97C01G009530	Watermelon (97103) v2	cmowmbB195
CmoCh13G004630	Bhi08G000754	Wax gourd	cmowgoB0246
CmoCh13G004630	CsGy1G033210	Cucumber (Gy14) v2	cgybcmoB073
CmoCh13G004630	Carg21452	Silver-seed gourd	carcmoB0536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004630	Cucumber (Gy14) v2	cgybcmoB061
CmoCh13G004630	Cucumber (Chinese Long) v3	cmocucB0225
CmoCh13G004630	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G004630	Cucumber (Gy14) v1	cgycmoB0654
CmoCh13G004630	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004630	Wild cucumber (PI 183967)	cmocpiB196
CmoCh13G004630	Cucumber (Chinese Long) v2	cmocuB192
CmoCh13G004630	Watermelon (Charleston Gray)	cmowcgB177
CmoCh13G004630	Cucurbita pepo (Zucchini)	cmocpeB182