MELO3C019444 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019444
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent DNA helicase Q-like 4A
Location	chr6 : 9760059 .. 9760364 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTGAGTTCTACCATTCTTTTGTTCCTTTTTTTTTTTTAAAAAGATATTATTAGAATATAAAATCTTAATCGATTTGTTGCTTATTTTAGGTGAGTTACTGTGAAAATGATGTTGATTGCCGGCGTTTGCTGCAACTTGTCCATTTTGGGGAGAAGTTTGATCCTGGAAAAAATTGCAAGAAAACATGTGATAATTGTTTGAAGTCCACAAATCTTATAGAAAAGGATGTCAGTGATGTCACTAAGCAACTGGTCTGGTGCAAAATTTTGCAATGTTCTGTTAAACTTATTCTATTATAG

mRNA sequence

ATGGTGAGTTACTGTGAAAATGATGTTGATTGCCGGCGTTTGCTGCAACTTGTCCATTTTGGGGAGAAGTTTGATCCTGGAAAAAATTGCAAGAAAACATGTGATAATTGTTTGAAGTCCACAAATCTTATAGAAAAGGATGTCAGTGATGTCACTAAGCAACTGGTCTGGTGCAAAATTTTGCAATGTTCTGTTAAACTTATTCTATTATAG

Coding sequence (CDS)

ATGGTGAGTTACTGTGAAAATGATGTTGATTGCCGGCGTTTGCTGCAACTTGTCCATTTTGGGGAGAAGTTTGATCCTGGAAAAAATTGCAAGAAAACATGTGATAATTGTTTGAAGTCCACAAATCTTATAGAAAAGGATGTCAGTGATGTCACTAAGCAACTGGTCTGGTGCAAAATTTTGCAATGTTCTGTTAAACTTATTCTATTATAG

Protein sequence

MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLVWCKILQCSVKLILL*

Homology

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BLAST of MELO3C019444 vs. Swiss-Prot
Match: RQL4A_ARATH (ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MV YCEN+V+CRR LQLVH GEKFD   NCKKTCDNC  S +LI+KDV+ +T+QLV
Sbjct: 823 MVRYCENEVECRRFLQLVHLGEKFD-STNCKKTCDNCCSSQSLIDKDVTLITRQLV 877

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BLAST of MELO3C019444 vs. Swiss-Prot
Match: RQL4B_ARATH (ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.7e-16
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCEN+VDCRR LQLVH GEKFD   NCK TCDNC  S  LI+KDV+ + +QLV
Sbjct: 839 MVSYCENEVDCRRFLQLVHLGEKFD-STNCKNTCDNCSSSKILIDKDVTVIARQLV 893

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BLAST of MELO3C019444 vs. Swiss-Prot
Match: SGS1_YEAST (ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-08
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 1    MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLI--EKDVSDVTKQLV 57
            +++YC+N  DCRR L L +F E FD  K C K CDNC  S N+I  E+DV++  K++V
Sbjct: 1037 VMAYCDNVTDCRRKLVLSYFNEDFD-SKLCHKNCDNCRNSANVINEERDVTEPAKKIV 1093

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BLAST of MELO3C019444 vs. Swiss-Prot
Match: RECQ1_PONAB (ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLVWCKI 60
           MVSYC+N   CRRLL   HF E ++  + C K CDNC K +    K++++  + L+  KI
Sbjct: 443 MVSYCQNISKCRRLLMAQHFDEVWN-SEACNKMCDNCCKDSAFERKNITEYCRDLI--KI 502

Query: 61  LQCSVKL 68
           L+ + +L
Sbjct: 503 LKQAEEL 506

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BLAST of MELO3C019444 vs. Swiss-Prot
Match: RECQ1_HUMAN (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-06
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLVWCKI 60
           MVSYC+N   CRR+L   HF E ++  + C K CDNC K +    K++++  + L+  KI
Sbjct: 443 MVSYCQNISKCRRVLMAQHFDEVWN-SEACNKMCDNCCKDSAFERKNITEYCRDLI--KI 502

Query: 61  LQCSVKL 68
           L+ + +L
Sbjct: 503 LKQAEEL 506

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BLAST of MELO3C019444 vs. TrEMBL
Match: A0A0A0L762_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKSTNLIEKDV+D++KQLV
Sbjct: 809 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSTNLIEKDVTDISKQLV 863

[Close]

BLAST of MELO3C019444 vs. TrEMBL
Match: W1NSM6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00118p00027960 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQL HFGEKFDP  NC+KTCDNC K+   IEK+V+D+ KQLV
Sbjct: 873 MVSYCENDVDCRRLLQLAHFGEKFDP-MNCRKTCDNCCKNITYIEKNVTDIAKQLV 927

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BLAST of MELO3C019444 vs. TrEMBL
Match: A0A0L9VHB1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g273300 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKF+    C KTCDNCLK TN IEKDV+++ KQLV
Sbjct: 705 MVSYCENDVDCRRLLQLVHFGEKFN-SSTCHKTCDNCLKITNFIEKDVTEIAKQLV 759

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BLAST of MELO3C019444 vs. TrEMBL
Match: G7INR2_MEDTR (ATP-dependent DNA helicase RecQ family protein OS=Medicago truncatula GN=MTR_2g006440 PE=4 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRL+QLVHFGEKFD   NC KTCDNC+K T+ +EKDV+++ KQLV
Sbjct: 780 MVSYCENDVDCRRLIQLVHFGEKFD-SSNCHKTCDNCVKITSFVEKDVTEIAKQLV 834

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BLAST of MELO3C019444 vs. TrEMBL
Match: V7BRA0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G216200g PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKF+    C KTCDNCLK TN IEKDV+++ KQLV
Sbjct: 792 MVSYCENDVDCRRLLQLVHFGEKFN-SSTCHKTCDNCLKITNFIEKDVTEIAKQLV 846

[Close]

BLAST of MELO3C019444 vs. TAIR10
Match: AT1G10930.1 (AT1G10930.1 DNA helicase (RECQl4A))

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MV YCEN+V+CRR LQLVH GEKFD   NCKKTCDNC  S +LI+KDV+ +T+QLV
Sbjct: 823 MVRYCENEVECRRFLQLVHLGEKFD-STNCKKTCDNCCSSQSLIDKDVTLITRQLV 877

[Close]

BLAST of MELO3C019444 vs. TAIR10
Match: AT1G60930.1 (AT1G60930.1 RECQ helicase L4B)

HSP 1 Score: 83.6 bits (205), Expect = 5.5e-17
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCEN+VDCRR LQLVH GEKFD   NCK TCDNC  S  LI+KDV+ + +QLV
Sbjct: 839 MVSYCENEVDCRRFLQLVHLGEKFD-STNCKNTCDNCSSSKILIDKDVTVIARQLV 893

[Close]

BLAST of MELO3C019444 vs. TAIR10
Match: AT1G31360.1 (AT1G31360.1 RECQ helicase L2)

HSP 1 Score: 50.8 bits (120), Expect = 3.9e-07
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           +V YC++   CRR     HFGE   P ++C   CDNC  S+ + E DVSD++K +V
Sbjct: 442 IVRYCQSKTKCRRSAFFRHFGE---PSQDCNGMCDNCALSSEVKEVDVSDLSKLVV 494

[Close]

BLAST of MELO3C019444 vs. NCBI nr
Match: gi|778680266|ref|XP_011651280.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKSTNLIEKDV+D++KQLV
Sbjct: 829 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSTNLIEKDVTDISKQLV 883

[Close]

BLAST of MELO3C019444 vs. NCBI nr
Match: gi|700202460|gb|KGN57593.1| (hypothetical protein Csa_3G221760 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKSTNLIEKDV+D++KQLV
Sbjct: 809 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSTNLIEKDVTDISKQLV 863

[Close]

BLAST of MELO3C019444 vs. NCBI nr
Match: gi|659112086|ref|XP_008456059.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKS NLIEKDV+D+ KQLV
Sbjct: 806 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSMNLIEKDVTDIAKQLV 860

[Close]

BLAST of MELO3C019444 vs. NCBI nr
Match: gi|659112088|ref|XP_008456060.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKS NLIEKDV+D+ KQLV
Sbjct: 796 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSMNLIEKDVTDIAKQLV 850

[Close]

BLAST of MELO3C019444 vs. NCBI nr
Match: gi|659112090|ref|XP_008456061.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X4 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1   MVSYCENDVDCRRLLQLVHFGEKFDPGKNCKKTCDNCLKSTNLIEKDVSDVTKQLV 57
           MVSYCENDVDCRRLLQLVHFGEKFDPG NCKKTCDNCLKS NLIEKDV+D+ KQLV
Sbjct: 762 MVSYCENDVDCRRLLQLVHFGEKFDPG-NCKKTCDNCLKSMNLIEKDVTDIAKQLV 816

The following BLAST results are available for this feature:

BLAST of MELO3C019444 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RQL4A_ARATH	2.6e-16	69.64	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=...	[more]
RQL4B_ARATH	9.7e-16	69.64	ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=...	[more]
SGS1_YEAST	5.7e-08	48.28	ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
RECQ1_PONAB	2.4e-06	40.30	ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1	[more]
RECQ1_HUMAN	5.3e-06	38.81	ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3	[more]

BLAST of MELO3C019444 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L762_CUCSA	2.2e-22	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1	[more]
W1NSM6_AMBTC	3.6e-17	76.79	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00118p00027960 PE=4 SV=...	[more]
A0A0L9VHB1_PHAAN	3.6e-17	78.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g273300 PE=4 SV=1	[more]
G7INR2_MEDTR	3.6e-17	75.00	ATP-dependent DNA helicase RecQ family protein OS=Medicago truncatula GN=MTR_2g0...	[more]
V7BRA0_PHAVU	3.6e-17	78.57	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G216200g PE=4 SV=1	[more]

BLAST of MELO3C019444 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10930.1	1.4e-17	69.64	DNA helicase (RECQl4A)	[more]
AT1G60930.1	5.5e-17	69.64	RECQ helicase L4B	[more]
AT1G31360.1	3.9e-07	42.86	RECQ helicase L2	[more]

BLAST of MELO3C019444 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680266\|ref\|XP_011651280.1\|	3.1e-22	92.86	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis sativus]	[more]
gi\|700202460\|gb\|KGN57593.1\|	3.1e-22	92.86	hypothetical protein Csa_3G221760 [Cucumis sativus]	[more]
gi\|659112086\|ref\|XP_008456059.1\|	2.0e-21	91.07	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo]	[more]
gi\|659112088\|ref\|XP_008456060.1\|	2.0e-21	91.07	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo]	[more]
gi\|659112090\|ref\|XP_008456061.1\|	2.0e-21	91.07	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011991	Winged helix-turn-helix DNA-binding domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0043140	ATP-dependent 3'-5' DNA helicase activity
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44193	melon EST collection version 4.0	transcribed_cluster
MU67114	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019444T1	MELO3C019444T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44193	MU44193	transcribed_cluster
MU67114	MU67114	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 1..56 score: 1.1
None	No IPR available	PANTHER	PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	coord: 1..56 score: 2.4
None	No IPR available	PANTHER	PTHR13710:SF94	ATP-DEPENDENT DNA HELICASE RECQ FAMILY PROTEIN	coord: 1..56 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019444	Cla97C05G091920	Watermelon (97103) v2	mewmbB434
MELO3C019444	Bhi01G001196	Wax gourd	mewgoB530
MELO3C019444	CSPI03G19060	Wild cucumber (PI 183967)	cpimeB241
MELO3C019444	Cucsa.032980	Cucumber (Gy14) v1	cgymeB002
MELO3C019444	CmoCh16G004170	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019444	Lsi05G001700	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019444	Cp4.1LG14g03910	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019444	Carg11314	Silver-seed gourd	carmeB0651
MELO3C019444	CsaV3_3G019190	Cucumber (Chinese Long) v3	cucmeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019444	Cucurbita maxima (Rimu)	cmameB298
MELO3C019444	Cucurbita maxima (Rimu)	cmameB691
MELO3C019444	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019444	Cucumber (Chinese Long) v2	cumeB166
MELO3C019444	Watermelon (Charleston Gray)	mewcgB427
MELO3C019444	Watermelon (97103) v1	mewmB461
MELO3C019444	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019444	Cucumber (Gy14) v2	cgybmeB210
MELO3C019444	Silver-seed gourd	carmeB0041