MELO3C019421 (gene) Melon (DHL92) v3.5.1

NameMELO3C019421
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent RNA helicase, putative
Locationchr6 : 9469406 .. 9469619 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGCGACAGTTGATTCAAACCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGGGTGCATCCTGTAACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGGTACCACCTCGCTTCAGACTCCCCTGCTGCCATACGATATGAAGTATCAAGTGGCAAAAAGGTATCTGGAACTCGTTTCCTACTCTATTAA

mRNA sequence

GTCTGCGACAGTTGATTCAAACCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGGGTGCATCCTGTAACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGGTACCACCTCGCTTCAGACTCCCCTGCTGCCATACGATATGAAGTATCAAGTGGCAAAAAGGTATCTGGAACTCGTTTCCTACTCTATTAA

Coding sequence (CDS)

GTCTGCGACAGTTGATTCAAACCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGGGTGCATCCTGTAACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGGTACCACCTCGCTTCAGACTCCCCTGCTGCCATACGATATGAAGTATCAAGTGGCAAAAAGGTATCTGGAACTCGTTTCCTACTCTATTAA

Protein sequence

SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGKKVSGTRFLLY*
BLAST of MELO3C019421 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-17
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVD++LFS YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSPAA+R + S   
Sbjct: 780 SATVDADLFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDTSIKD 839

Query: 61  KV 63
           K+
Sbjct: 840 KL 841

BLAST of MELO3C019421 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-17
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVD++ FS YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSPAA+  + S   
Sbjct: 760 SATVDAHQFSRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLASDSPAALSSDTSITD 819

Query: 61  KV 63
           K+
Sbjct: 820 KL 821

BLAST of MELO3C019421 vs. Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDS 49
           SATVDS+ FS YF +CP++   GR +PV  + LEDI E TG+ L  DS
Sbjct: 733 SATVDSDKFSTYFTHCPILRISGRSYPVEVFHLEDIVEETGFVLEKDS 780

BLAST of MELO3C019421 vs. Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-07
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDS 49
           SATVDS  FS YF +CP++   GR +PV  + LEDI E TG+ L  DS
Sbjct: 734 SATVDSEKFSTYFTHCPILRISGRSYPVEVFHLEDIIEETGFVLEKDS 781

BLAST of MELO3C019421 vs. Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-07
Identity = 29/66 (43.94%), Postives = 35/66 (53.03%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SAT+++ LFS YF +CPVIT  GR  PV  +FLED    T Y L   SP     +  S +
Sbjct: 700 SATLNAELFSDYFNSCPVITIPGRTFPVDQFFLEDAIAVTRYVLQDGSPYMRSMKQISKE 759

Query: 61  KVSGTR 67
           K+   R
Sbjct: 760 KLKARR 765

BLAST of MELO3C019421 vs. TrEMBL
Match: A0A0A0L6M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGK
Sbjct: 222 SATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGK 281

Query: 61  KVSGTRFLLY 71
           KV  T FLLY
Sbjct: 282 KVLETCFLLY 291

BLAST of MELO3C019421 vs. TrEMBL
Match: V4T5X0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSS 59
           SATVDSNLFS YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AAIRYE SS
Sbjct: 778 SATVDSNLFSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

BLAST of MELO3C019421 vs. TrEMBL
Match: A0A067DYB2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0472022mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSS 59
           SATVDSNLFS YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AAIRYE SS
Sbjct: 58  SATVDSNLFSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 115

BLAST of MELO3C019421 vs. TrEMBL
Match: V4SVZ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSS 59
           SATVDSNLFS YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AAIRYE SS
Sbjct: 778 SATVDSNLFSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

BLAST of MELO3C019421 vs. TrEMBL
Match: V4SBK4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSS 59
           SATVDSNLFS YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AAIRYE SS
Sbjct: 778 SATVDSNLFSRYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

BLAST of MELO3C019421 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-18
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVD++LFS YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSPAA+R + S   
Sbjct: 780 SATVDADLFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDTSIKD 839

Query: 61  KV 63
           K+
Sbjct: 840 KL 841

BLAST of MELO3C019421 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-18
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVD++ FS YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSPAA+  + S   
Sbjct: 760 SATVDAHQFSRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLASDSPAALSSDTSITD 819

Query: 61  KV 63
           K+
Sbjct: 820 KL 821

BLAST of MELO3C019421 vs. TAIR10
Match: AT5G04895.1 (AT5G04895.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.1e-08
Identity = 24/46 (52.17%), Postives = 28/46 (60.87%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLAS 47
           SAT+++ LFS Y+G  P I   G  HPV  +FLED+ E TGY L S
Sbjct: 416 SATLNAELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTS 461

BLAST of MELO3C019421 vs. TAIR10
Match: AT2G01130.1 (AT2G01130.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 24/44 (54.55%), Postives = 27/44 (61.36%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHL 45
           SAT+D+ LFS YFG   VI   G  +PV ++FLEDI E T Y L
Sbjct: 376 SATLDAELFSSYFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRL 419

BLAST of MELO3C019421 vs. TAIR10
Match: AT2G30800.1 (AT2G30800.1 helicase in vascular tissue and tapetum)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-06
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDI 37
           SAT+D+  FSGYFG CPV+   G  +PV T +LED+
Sbjct: 345 SATLDAERFSGYFGGCPVVRVPGFTYPVRTLYLEDV 380

BLAST of MELO3C019421 vs. NCBI nr
Match: gi|700202477|gb|KGN57610.1| (hypothetical protein Csa_3G228870 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-29
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGK
Sbjct: 222 SATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGK 281

Query: 61  KVSGTRFLLY 71
           KV  T FLLY
Sbjct: 282 KVLETCFLLY 291

BLAST of MELO3C019421 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK
Sbjct: 650 SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 709

Query: 61  K 62
           K
Sbjct: 710 K 710

BLAST of MELO3C019421 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK
Sbjct: 804 SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 863

Query: 61  K 62
           K
Sbjct: 864 K 864

BLAST of MELO3C019421 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGK
Sbjct: 804 SATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGK 863

Query: 61  K 62
           K
Sbjct: 864 K 864

BLAST of MELO3C019421 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 1   SATVDSNLFSGYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGK 60
           SATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGK
Sbjct: 650 SATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGK 709

Query: 61  K 62
           K
Sbjct: 710 K 710

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DEXH7_ARATH3.0e-1767.74DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH3.9e-1767.74DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
DHX29_MOUSE1.3e-0754.17ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1[more]
DHX29_HUMAN1.7e-0754.17ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2[more]
DHX57_HUMAN4.8e-0743.94Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L6M0_CUCSA3.1e-2992.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1[more]
V4T5X0_9ROSI1.1e-1882.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1[more]
A0A067DYB2_CITSI1.1e-1882.76Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0472022mg PE=4 ... [more]
V4SVZ1_9ROSI1.1e-1882.76Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1[more]
V4SBK4_9ROSI1.1e-1882.76Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100000301mg PE... [more]
Match NameE-valueIdentityDescription
AT1G58060.11.7e-1867.74 RNA helicase family protein[more]
AT1G58050.12.2e-1867.74 RNA helicase family protein[more]
AT5G04895.16.1e-0852.17 DEA(D/H)-box RNA helicase family protein[more]
AT2G01130.11.1e-0654.55 DEA(D/H)-box RNA helicase family protein[more]
AT2G30800.11.5e-0655.56 helicase in vascular tissue and tapetum[more]
Match NameE-valueIdentityDescription
gi|700202477|gb|KGN57610.1|4.5e-2992.86hypothetical protein Csa_3G228870 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|7.2e-27100.00PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|7.2e-27100.00PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
gi|778680313|ref|XP_011651287.1|2.1e-2696.72PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|2.1e-2696.72PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU56859melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019421T1MELO3C019421T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU56859MU56859transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 1..47
score: 2.4
NoneNo IPR availablePANTHERPTHR18934:SF145ATP-DEPENDENT RNA HELICASE DHX57-RELATEDcoord: 1..47
score: 2.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019421CSPI03G19220Wild cucumber (PI 183967)cpimeB241
MELO3C019421Cucsa.032790Cucumber (Gy14) v1cgymeB002
The following gene(s) are paralogous to this gene:

None