Cucsa.032790 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032790
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent RNA helicase, putative
Locationscaffold00429 : 2021082 .. 2022028 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGATGAAACTTTGACTGGTATCACTCATATTATAGTTGATGAAGTACATGAACGGTCTCTGCTGGTGAGTTGCTATTAACTCTAGTCTTCATCAGAAACCCTTTTTTGATGACCAAGACATAATTGGTTTGGACAGTAATTTCATGATGTGCAGGGATGTTTTTtCTTTACTGAAGTAATATGTTTTTCTTGGTCTATTTTCTGTTCCATGAATTTATTCTTACACAAACCAAATTTTTGGTCTCCAAGTTGTCGGATTGATGTCTATTTGACTCTGGAGGTTTGAAAATAAACTTCATCCTCGAGTTCTGGAAAAATGATTCTTAAGAATTCTTTCAATTAGTTGATGTAATGGAATGCTTATGTGGCTGTTAAATGGTATGTTTAGAAAAGACTAAGGATATTTTGAAATTAGAGAGTTCATGTCTTATTTTCCCCTTCCCGTTCTTTTATTTGGGTCCTTATACAGAATGAAAGATCCGCCTATTGTCTAAAATTAATGGATTTCTAGTGTTAAGGTCTTGGAAGATGAAACTATAGTTGACATGAAACTTCATTTTCTGCAGGGCGATTTTCTCTTAGTTGTTTTGAAGAATCTGATTGAGAAACGTTCTGTTGAAAGTTCATCTCCCCTGAAGGTTGTTCTAATGTATGTCTGCTCATTTTATTCAGTCTGCTAATTACTTATGAACACAAAGTATGAATATGTGATATTTGGAGCTTCAGTATTGTTCTTCGATTTTAATACTTTTGATTCCCAGGTCTGCGACAGTTGATTCAAATCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGAATGCATCCTGTGACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGATACCACCTCGCTTCAGACTCCCCCGCTGCCGTACGATATGAAGTATCAAGTGGCAAAAAG

mRNA sequence

GGAGATGAAACTTTGACTGGTATCACTCATATTATAGTTGATGAAGTACATGAACGGTCTCTGCTGGGCGATTTTCTCTTAGTTGTTTTGAAGAATCTGATTGAGAAACGTTCTGTTGAAAGTTCATCTCCCCTGAAGGTTGTTCTAATGTCTGCGACAGTTGATTCAAATCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGAATGCATCCTGTGACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGATACCACCTCGCTTCAGACTCCCCCGCTGCCGTACGATATGAAGTATCAAGTGGCAAAAAG

Coding sequence (CDS)

GGAGATGAAACTTTGACTGGTATCACTCATATTATAGTTGATGAAGTACATGAACGGTCTCTGCTGGGCGATTTTCTCTTAGTTGTTTTGAAGAATCTGATTGAGAAACGTTCTGTTGAAAGTTCATCTCCCCTGAAGGTTGTTCTAATGTCTGCGACAGTTGATTCAAATCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTAGAATGCATCCTGTGACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGATACCACCTCGCTTCAGACTCCCCCGCTGCCGTACGATATGAAGTATCAAGTGGCAAAAAG

Protein sequence

GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK
Homology
[Close]
BLAST of Cucsa.032790 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-37
Identity = 77/108 (71.30%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLF 60
           GD TL  +THIIVDEVHERSLLGDFLL++LK+LIEK+S +++S  LKV+LMSATVD++LF
Sbjct: 729 GDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSATVDADLF 788

Query: 61  SGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVS 108
           S YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSPAA+R + S
Sbjct: 789 SRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDTS 836

[Close]
BLAST of Cucsa.032790 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-36
Identity = 76/108 (70.37%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLF 60
           GD TL  +THIIVDEVHERSL+GDFLL++LK+LIEK+S +++ P LKV+LMSATVD++ F
Sbjct: 709 GDTTLKDVTHIIVDEVHERSLMGDFLLIILKSLIEKQSWDNALPKLKVILMSATVDAHQF 768

Query: 61  SGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVS 108
           S YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSPAA+  + S
Sbjct: 769 SRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLASDSPAALSSDTS 816

[Close]
BLAST of Cucsa.032790 vs. Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 8.3e-22
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GD TL G+THIIVDEVHER+   DFLL+VLK+++ +R+      L+V+LMSAT+D+ LFS
Sbjct: 656 GDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRAT-----LQVILMSATLDAGLFS 715

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP 100
            YF  CPVIT  GR  PV  +FLED    T Y L   SP
Sbjct: 716 KYFSYCPVITIPGRAFPVDQFFLEDALAVTRYVLQDGSP 749

[Close]
BLAST of Cucsa.032790 vs. Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-21
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 2   DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSG 61
           D  L  ++H+IVDEVHERS+  DFLLV+LK +++KRS      L ++LMSATVDS+ FS 
Sbjct: 689 DGLLADVSHVIVDEVHERSVQSDFLLVILKEILQKRS-----DLHLILMSATVDSDKFST 748

Query: 62  YFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS 99
           YF +CP++   GR +PV  + LEDI E TG+ L  DS
Sbjct: 749 YFTHCPILRISGRSYPVEVFHLEDIVEETGFVLEKDS 780

[Close]
BLAST of Cucsa.032790 vs. Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-21
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1 

Query: 2   DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSG 61
           D  L+ ++H+IVDEVHERS+  DFLL++LK +++KRS      L ++LMSATVDS  FS 
Sbjct: 690 DGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRS-----DLHLILMSATVDSEKFST 749

Query: 62  YFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS 99
           YF +CP++   GR +PV  + LEDI E TG+ L  DS
Sbjct: 750 YFTHCPILRISGRSYPVEVFHLEDIIEETGFVLEKDS 781

[Close]
BLAST of Cucsa.032790 vs. TrEMBL
Match: A0A0A0L6M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.8e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS
Sbjct: 172 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 231

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK
Sbjct: 232 GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 282

[Close]
BLAST of Cucsa.032790 vs. TrEMBL
Match: W9QMV9_9ROSA (ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.6e-41
Identity = 86/111 (77.48%), Postives = 95/111 (85.59%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GD+ LTGITH+IVDEVHERSLLGDFLL+VLKNLIEK+S   S  LKV+LMSATVDSNLFS
Sbjct: 740 GDKNLTGITHVIVDEVHERSLLGDFLLIVLKNLIEKQSAHKSPKLKVILMSATVDSNLFS 799

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
            YFG+CPVITAEGR HPVT YFLEDIYES  Y LASDS AA+RYE  + +K
Sbjct: 800 RYFGDCPVITAEGRTHPVTNYFLEDIYESINYRLASDSAAAIRYETFTKEK 850

[Close]
BLAST of Cucsa.032790 vs. TrEMBL
Match: V4SVZ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-40
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GD+ LTG+TH+IVDEVHERSLLGDFLL+VLK+L+EK+S   +  LKV+LMSATVDSNLFS
Sbjct: 728 GDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFS 787

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSS 109
            YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AA+RYE SS
Sbjct: 788 RYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

[Close]
BLAST of Cucsa.032790 vs. TrEMBL
Match: V4T5X0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-40
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GD+ LTG+TH+IVDEVHERSLLGDFLL+VLK+L+EK+S   +  LKV+LMSATVDSNLFS
Sbjct: 728 GDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFS 787

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSS 109
            YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AA+RYE SS
Sbjct: 788 RYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

[Close]
BLAST of Cucsa.032790 vs. TrEMBL
Match: V4SBK4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-40
Identity = 82/108 (75.93%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GD+ LTG+TH+IVDEVHERSLLGDFLL+VLK+L+EK+S   +  LKV+LMSATVDSNLFS
Sbjct: 728 GDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFS 787

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSS 109
            YFG+CPVITAEGR HPVTTYFLED+YES  Y LA DS AA+RYE SS
Sbjct: 788 RYFGDCPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASS 835

[Close]
BLAST of Cucsa.032790 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-38
Identity = 77/108 (71.30%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLF 60
           GD TL  +THIIVDEVHERSLLGDFLL++LK+LIEK+S +++S  LKV+LMSATVD++LF
Sbjct: 729 GDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSATVDADLF 788

Query: 61  SGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVS 108
           S YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSPAA+R + S
Sbjct: 789 SRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAPDSPAALRSDTS 836

[Close]
BLAST of Cucsa.032790 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 153.7 bits (387), Expect = 6.7e-38
Identity = 76/108 (70.37%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLF 60
           GD TL  +THIIVDEVHERSL+GDFLL++LK+LIEK+S +++ P LKV+LMSATVD++ F
Sbjct: 709 GDTTLKDVTHIIVDEVHERSLMGDFLLIILKSLIEKQSWDNALPKLKVILMSATVDAHQF 768

Query: 61  SGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVS 108
           S YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSPAA+  + S
Sbjct: 769 SRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLASDSPAALSSDTS 816

[Close]
BLAST of Cucsa.032790 vs. TAIR10
Match: AT2G01130.1 (AT2G01130.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-21
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1 

Query: 2   DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSG 61
           D  L G+TH+IVDE+HER +  DFLL++LK+L+ +RS      LK++LMSAT+D+ LFS 
Sbjct: 332 DRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRS-----ELKLILMSATLDAELFSS 391

Query: 62  YFGNCPVITAEGRMHPVTTYFLEDIYESTGYHL 95
           YFG   VI   G  +PV ++FLEDI E T Y L
Sbjct: 392 YFGGAGVIYIPGFTYPVRSHFLEDILEMTRYRL 419

[Close]
BLAST of Cucsa.032790 vs. TAIR10
Match: AT5G04895.1 (AT5G04895.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-21
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 2   DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSG 61
           D  L G+TH+ VDE+HER +  DFL++VLK L+ +R       L++VLMSAT+++ LFS 
Sbjct: 372 DRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRP-----DLRLVLMSATLNAELFSN 431

Query: 62  YFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS 97
           Y+G  P I   G  HPV  +FLED+ E TGY L S
Sbjct: 432 YYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTS 461

[Close]
BLAST of Cucsa.032790 vs. TAIR10
Match: AT1G48650.2 (AT1G48650.2 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-20
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 1 

Query: 2   DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSG 61
           D +L G+TH++VDE+HER +  DFLL+VLK+L+ +R       LK++LMSAT+++ LFS 
Sbjct: 411 DRSLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRP-----DLKLILMSATLNAELFSS 470

Query: 62  YFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS 97
           YFG  P +   G  +PV  +FLED  E++GY L +
Sbjct: 471 YFGGAPAMHIPGFTYPVRAHFLEDYLETSGYRLTT 500

[Close]
BLAST of Cucsa.032790 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS
Sbjct: 754 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 813

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK
Sbjct: 814 GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 864

[Close]
BLAST of Cucsa.032790 vs. NCBI nr
Match: gi|700202477|gb|KGN57610.1| (hypothetical protein Csa_3G228870 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS
Sbjct: 172 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 231

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK
Sbjct: 232 GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 282

[Close]
BLAST of Cucsa.032790 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS
Sbjct: 600 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 659

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK
Sbjct: 660 GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 710

[Close]
BLAST of Cucsa.032790 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFS
Sbjct: 754 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSAESSSPLKVILMSATVDSNLFS 813

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGKK
Sbjct: 814 GYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGKK 864

[Close]
BLAST of Cucsa.032790 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 1 

Query: 1   GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFS 60
           GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFS
Sbjct: 600 GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSAESSSPLKVILMSATVDSNLFS 659

Query: 61  GYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEVSSGKK 112
           GYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPAA+RYEVSSGKK
Sbjct: 660 GYFGNCPVITAEGRVHPVTTYFLEDIYESTGYHLASDSPAAIRYEVSSGKK 710

The following BLAST results are available for this feature:
BLAST of Cucsa.032790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH7_ARATH3.1e-3771.30DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH1.2e-3670.37DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
DHX57_MOUSE8.3e-2255.56Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=1 SV=2[more]
DHX29_MOUSE1.9e-2152.58ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1[more]
DHX29_HUMAN1.9e-2151.55ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2[more]
BLAST of Cucsa.032790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6M0_CUCSA6.8e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1[more]
W9QMV9_9ROSA5.6e-4177.48ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1[more]
V4SVZ1_9ROSI4.7e-4075.93Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1[more]
V4T5X0_9ROSI4.7e-4075.93Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1[more]
V4SBK4_9ROSI4.7e-4075.93Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100000301mg PE... [more]
BLAST of Cucsa.032790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58060.11.8e-3871.30 RNA helicase family protein[more]
AT1G58050.16.7e-3870.37 RNA helicase family protein[more]
AT2G01130.12.6e-2152.69 DEA(D/H)-box RNA helicase family protein[more]
AT5G04895.14.4e-2149.47 DEA(D/H)-box RNA helicase family protein[more]
AT1G48650.21.7e-2047.37 DEA(D/H)-box RNA helicase family protein[more]
BLAST of Cucsa.032790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680313|ref|XP_011651287.1|9.7e-55100.00PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|700202477|gb|KGN57610.1|9.7e-55100.00hypothetical protein Csa_3G228870 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|9.7e-55100.00PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|659112040|ref|XP_008456036.1|1.4e-5396.40PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
gi|659112042|ref|XP_008456037.1|1.4e-5396.40PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032790.1Cucsa.032790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainPROFILEPS51192HELICASE_ATP_BIND_1coord: 1..72
score: 10
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 3..55
score: 2.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..84
score: 2.4
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 1..97
score: 5.6
NoneNo IPR availablePANTHERPTHR18934:SF145ATP-DEPENDENT RNA HELICASE DHX57-RELATEDcoord: 1..97
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.032790Csa3G228870Cucumber (Chinese Long) v2cgycuB003
Cucsa.032790MELO3C019421Melon (DHL92) v3.5.1cgymeB002
Cucsa.032790CSPI03G19220Wild cucumber (PI 183967)cgycpiB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032790Silver-seed gourdcarcgyB0730
Cucsa.032790Cucumber (Chinese Long) v3cgycucB006
Cucsa.032790Watermelon (97103) v2cgywmbB003
Cucsa.032790Wax gourdcgywgoB003
Cucsa.032790Cucurbita maxima (Rimu)cgycmaB0007
Cucsa.032790Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.032790Cucurbita moschata (Rifu)cgycmoB0006
Cucsa.032790Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.032790Watermelon (Charleston Gray)cgywcgB003
Cucsa.032790Watermelon (97103) v1cgywmB002
Cucsa.032790Cucurbita pepo (Zucchini)cgycpeB0005
Cucsa.032790Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.032790Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.032790Melon (DHL92) v3.6.1cgymedB002
Cucsa.032790Silver-seed gourdcarcgyB0048