MELO3C019420 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019420
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent RNA helicase, putative
Locationchr6 : 9448805 .. 9449478 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTGGAAGGCAGGTAACTGTTTTCGCCATGCACCCATTTAATTGGCTCTGCTTTTCATTCCAATCCACGATGCGGTAGAGGAAAATATATAGAATATTAAAGCTTGAAAATAGTTAGGAAAAGATTATTATCAATAAAAAAAAAAAATGTGTGTGTATGTGCGTTTTAATGTTGAATGTTTAGTCATGTTACACAGCAGGATTAGTAAATTTGTTGATACAACTAATACAATGATTTCTTATAATTGATCAAACAAATATTTGAAGTTTTATCTAGTATTTCAAATATGTAATCCCTGCATCATAAACATCTATTTGATTTGTTAAACTAGAATTCCAGAACAACAATATAAGTATTTGTGTACATATCCTTTATTGCTAATACCCTTTAATCTTTGCCATTGATTTTTCATCAAAAATGTACATGTTTATGATATCGAGCACCATTGTGCTTGCTTGGAATTTGTAATCTTGCAGGGGAGTCAATTAGCAAAGTTGACGACAATGAGAAGGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAATTGAACAGCTCAATATTGAGGATGATAAGAAGCCACGTGCTCTTGATCTTAATTCACATTCATTCGGGGAAAGTAAGTAG

mRNA sequence

ATGCAGTGGAAGGCAGGGGAGTCAATTAGCAAAGTTGACGACAATGAGAAGGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAATTGAACAGCTCAATATTGAGGATGATAAGAAGCCACGTGCTCTTGATCTTAATTCACATTCATTCGGGGAAAGTAAGTAG

Coding sequence (CDS)

ATGCAGTGGAAGGCAGGGGAGTCAATTAGCAAAGTTGACGACAATGAGAAGGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAATTGAACAGCTCAATATTGAGGATGATAAGAAGCCACGTGCTCTTGATCTTAATTCACATTCATTCGGGGAAAGTAAGTAG

Protein sequence

MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDLNSHSFGESK*
Homology
[Close]
BLAST of MELO3C019420 vs. TrEMBL
Match: A0A0A0LAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+L
Sbjct: 267 MQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALEL 326

Query: 61  NSHSFGESK 70
           NSHSFGESK
Sbjct: 327 NSHSFGESK 335

[Close]
BLAST of MELO3C019420 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL
Sbjct: 383 MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 442

Query: 61  NSHSFGE 68
           NSHSFGE
Sbjct: 443 NSHSFGE 449

[Close]
BLAST of MELO3C019420 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL
Sbjct: 537 MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 596

Query: 61  NSHSFGE 68
           NSHSFGE
Sbjct: 597 NSHSFGE 603

[Close]
BLAST of MELO3C019420 vs. NCBI nr
Match: gi|700202479|gb|KGN57612.1| (hypothetical protein Csa_3G229380 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-28
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+L
Sbjct: 267 MQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALEL 326

Query: 61  NSHSFGESK 70
           NSHSFGESK
Sbjct: 327 NSHSFGESK 335

[Close]
BLAST of MELO3C019420 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+L
Sbjct: 537 MQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALEL 596

Query: 61  NSHSFGE 68
           NSHSFGE
Sbjct: 597 NSHSFGE 603

[Close]
BLAST of MELO3C019420 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MQWKAGESISKVDDNEKDRRASFVDSLLDASNIGSASKTLVGKIEQLNIEDDKKPRALDL 60
           MQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+L
Sbjct: 383 MQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALEL 442

Query: 61  NSHSFGE 68
           NSHSFGE
Sbjct: 443 NSHSFGE 449

The following BLAST results are available for this feature:
BLAST of MELO3C019420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAE3_CUCSA2.0e-2894.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1[more]
BLAST of MELO3C019420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112042|ref|XP_008456037.1|7.6e-29100.00PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|7.6e-29100.00PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
gi|700202479|gb|KGN57612.1|2.9e-2894.20hypothetical protein Csa_3G229380 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|3.2e-2794.03PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|3.2e-2794.03PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008026 ATP-dependent helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019420T1MELO3C019420T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019420Csa3G229380Cucumber (Chinese Long) v2cumeB166
MELO3C019420Bhi01G001182Wax gourdmewgoB530
MELO3C019420CSPI03G19240Wild cucumber (PI 183967)cpimeB241
MELO3C019420Cucsa.032730Cucumber (Gy14) v1cgymeB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019420Cucurbita maxima (Rimu)cmameB298
MELO3C019420Cucurbita maxima (Rimu)cmameB691
MELO3C019420Cucurbita moschata (Rifu)cmomeB290
MELO3C019420Cucurbita moschata (Rifu)cmomeB683
MELO3C019420Watermelon (Charleston Gray)mewcgB427
MELO3C019420Watermelon (97103) v1mewmB461
MELO3C019420Cucurbita pepo (Zucchini)cpemeB192
MELO3C019420Cucurbita pepo (Zucchini)cpemeB412
MELO3C019420Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C019420Cucumber (Gy14) v2cgybmeB210
MELO3C019420Silver-seed gourdcarmeB0041
MELO3C019420Silver-seed gourdcarmeB0651
MELO3C019420Cucumber (Chinese Long) v3cucmeB247
MELO3C019420Watermelon (97103) v2mewmbB434